Track Data Hubs
 

Track data hubs are collections of external tracks that can be added to the UCSC Genome Browser. Click Connect to attach a hub and redirect to the assembly gateway page. Hub tracks will then show up in the hub's own blue bar track group under the browser graphic. For more information, including where to host your track hub, see our User's Guide.

Track Hubs are created and maintained by external sources. UCSC is not responsible for their content.

The list below can be filtered on words in the hub description pages or by assemblies.
Search terms: Assembly:
Displayed list restricted by above search terms 

When exploring the detailed search results for a hub, you may right-click on an assembly or track line to open it in a new window.

Display Hub Name Description AssembliesClick to connect and browse directly
Bird Alignment (363 species) Bird Alignment (363 species) [+] Gallus_gallus, Acanthisitta_chloris...
Breast Cancer Epigenomics Track Hub Breast Cancer Epigenomics Track Hub hg19
Breast Cancer lncRNA Breast Cancer lncRNA PMID 26236012 hg19
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
CCGP The California Conservation Genomics Project (CCGP) assemblies [+] GCA_026170555.1, GCA_026170545.1...
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at CHOP hg19, mm9, hg38
Dfam database of TE families and annotations Dfam database of Transposable Element families and genome annotations hg38
ENCODE Analysis Hub ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host ftp.ebi.ac.uk IP 193.62.193.165 port 80. Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
EPD Viewer Hub Promoter specific experimental data and TSS annotation from the EPD database [+] hg19, hg38, mm9, mm10, danRer7, rheMac8, galGal5, rn6...
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8, galGal5
GTEx Analysis Hub Genotype Tissue Expression (GTEx) Project Analysis Hub hg19, hg38
HPRC The Human Pangenome Reference Consortium [+] GCA_018471515.1, GCA_018472595.1...
IDEAS roadmap 20states Roadmap Epigenomics 20 state genome segmentation using the IDEAS algorithm hg19
Mammal and Bird Alignment (605 species) Mammal and Bird Alignment (605 species) [+] Homo_sapiens, Gallus_gallus...
MethBase2 Thousands of analyzed methylomes / DNA methylation profiles from bisulfite sequencing data [+] hg38, apiMel2, bosTau9, canFam6, danRer11, galGal6...
Primate x4 NeuroDiff and Human CRISPRa RNAseq coverage tracks from 4 Primate neuro-differentiation assays and a human CRISPRa assay hg19, panTro4, ponAbe2, rheMac8
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19, hg38
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
SIHUMI simplified human intestinal microbiota HUB [+] bact, bifi, blautia, anaero, ery, clostri, lacto...
UCSC Repeat Browser 2020 Update Human Repeat consensuses annotated with lifted tracks hg38reps, hg19, hg38
UniProt Features UniProtKB reviewed protein features mapped to the Ensembl genome assembly. hg38
Bird Alignment (363 species) Bird Alignment (363 species) [+] Gallus_gallus, Acanthisitta_chloris...
Breast Cancer Epigenomics Track Hub Breast Cancer Epigenomics Track Hub hg19
Breast Cancer lncRNA Breast Cancer lncRNA PMID 26236012 hg19
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Cancer Genomics Tracks TCGA and ICGC Cancer Mutations, TCGA Expression, Immune Epitopes Database (IEDB), Cancer Immunity Peptides Database, Dienstmann Variant/Cancer database, CIVIC, MyCancerGenome.org, OncoKB hg19
CCGP The California Conservation Genomics Project (CCGP) assemblies [+] GCA_026170555.1, GCA_026170545.1...
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at CHOP hg19, mm9, hg38
Dfam database of TE families and annotations Dfam database of Transposable Element families and genome annotations hg38
ENCODE Analysis Hub ERROR: Error in TCP non-blocking connect() 111 - Connection refused. Host ftp.ebi.ac.uk IP 193.62.193.165 port 80. Couldn't open http://ftp.ebi.ac.uk/pub/databases/ensembl/encode/integration_data_jan2011/hub.txt Debug Help hg19
EPD Viewer Hub Promoter specific experimental data and TSS annotation from the EPD database [+] hg19, hg38, mm9, mm10, danRer7, rheMac8, galGal5, rn6...
FANTOM5 RIKEN FANTOM5 Phase1 and Phase2 data hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8, galGal5
GTEx Analysis Hub Genotype Tissue Expression (GTEx) Project Analysis Hub hg19, hg38
HPRC The Human Pangenome Reference Consortium [+] GCA_018471515.1, GCA_018472595.1...
IDEAS roadmap 20states Roadmap Epigenomics 20 state genome segmentation using the IDEAS algorithm hg19
Mammal and Bird Alignment (605 species) Mammal and Bird Alignment (605 species) [+] Homo_sapiens, Gallus_gallus...
MethBase2 Thousands of analyzed methylomes / DNA methylation profiles from bisulfite sequencing data [+] hg38, apiMel2, bosTau9, canFam6, danRer11, galGal6...
Primate x4 NeuroDiff and Human CRISPRa RNAseq coverage tracks from 4 Primate neuro-differentiation assays and a human CRISPRa assay hg19, panTro4, ponAbe2, rheMac8
Principal Splice Isoforms APPRIS Selects a single CDS variant for each gene as the 'PRINCIPAL' isoform based on the range of protein features. [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19, hg38
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
SIHUMI simplified human intestinal microbiota HUB [+] bact, bifi, blautia, anaero, ery, clostri, lacto...
UCSC Repeat Browser 2020 Update Human Repeat consensuses annotated with lifted tracks hg38reps, hg19, hg38
UniProt Features UniProtKB reviewed protein features mapped to the Ensembl genome assembly. hg38

Enter hub URLs below to connect hubs. Hubs connected this way are not accessible to other users by default.

If you wish to share your hub you can create a session link. First, connect the hub and configure the tracks image as desired, then navigate to My Sessions (My Data > My Sessions). The resulting stable link can be added to publications and shared freely. You, as the author, also have the power to update the session contents freely. Alternatively, you may build a link with the hub URL to allow users to retain their browser configuration, connected hubs, and custom tracks.

See our public hub guidelines for information on submitting a new public hub.

Display Hub Name Description AssembliesClick to connect and browse directly. Click copy icon to copy URL to clipboard for sharing.
SL4Tomato Hub Cultivar: Heinz 1706 Solanum SL4.00 Build lycopersicum Hub solLy4
Tomato Hub Cultivar: Heinz 1706 Solanum lycopersicum Hub solLyc1
Track Collections Track Collections mm10
Track Collections Track Collections hs1

Create your own hub

For information on making track hubs, see the following pages:
You may also contact us if you have any issues or questions on hub development.

Check a hub for errors

  Load Example URL
Use the URL bar above to check a hub for errors. This will validate the hub's configuration files, including hub.txt, genomes.txt and trackDb.txt. It will also present a hierarchical tree of tracks with any errors in red. A hub with no errors still shows the tree which can be used to explore the track hierarchy. Hub error checking will always refresh the files and never use our remote file cache (see below).

Enable Genome Browser debugging modes

These apply to all connected hubs. By default, caching is activated and track load times are not shown, but you can change these settings while developing your hub:
File caching: ON  
Current setting: Always cache contents at UCSC. This means that data access is faster, but you cannot see the effect of changes to your files on the Genome Browser for at least 5 minutes.
For custom tracks, this affects only the remote formats (bigBed, bigWig, VCF+tabix, BAM, CRAM, bigPsl, HiC, etc), not text files (BED, VCF, PSL, etc), which are stored at UCSC.
Show load times: OFF  
Current setting: Show no timing measurements.