Track Name: contains
and Description: contains
and
Group: is
Any
Comparative Genomics
Denisova Assembly and Analysis
Expression
Genes and Gene Predictions
Mapping and Sequencing
Neandertal Assembly and Analysis
Phenotype and Literature
Regulation
Repeats
Variation
mRNA and EST
and
Data Format: is
Any
Alignment binary (bam) - binary SAM
Alignment Blast (psl) - Blast output
Alignment Chains (chain) - Pairwise alignment
Alignment Nets (netAlign) - Net alignments
Alignments (maf) - multiple alignment format
bed - browser extensible data
bigBed - self index, often remote bed format
ctgPos - Contigs
expRatio - Expression ratios
Genes (genePred) - Gene prediction and annotation
Peaks Broad (broadPeak) - ENCODE large region peak format
Peaks Narrow (narrowPeak) - ENCODE small region peak format
Repeats (rmsk) - Repeat masking
Signal (bedGraph) - graphically represented bed data
Signal (bigWig) - self index, often remote wiggle format
Signal (wig) - wiggle format
Signal (wigMaf) - multiple alignment wiggle
and
Include Public Hub Search Results:
NOTE: Including public hubs in results may be slow
ENCODE terms
and
Antibody or target protein
Assembly originally mapped to
Cell, tissue or DNA sample
Cellular compartment
Control or Input for ChIP-seq
ENCODE Data Freeze
Experiment (Assay) type
Experiment or Input
GEO sample accession
Lab producing data
Lab provided identifier
Lab specific details
Lab specific informatics
Library Protocol
Mapping algorithm
Obtained by
Paired/Single reads lengths
Platform
Principal Investigator on grant
Replicate number
RNA Extract
Sequencing Platform
Sex of donor organism
Table name at UCSC
Treatment
UCSC Accession
View - Peaks or Signals
is among
Any
8988T
A549
Adrenal Gland BC H12803N
AG04449
AG04450
AG09309
AG09319
AG10803
AoAF
AoSMC
Astrocy
B cells CD20+ RO01794
B-cells CD20+
B-cells CD20+ (RO01778)
BE(2)-C
BG02ES
BJ
Bone Marrow HS27a
Bone Marrow HS27a
Bone Marrow HS27a
Brain BC H11058N
Breast BC 02-03015
Caco-2
CD34+ Mobilized
CD4+ Naive Wb11970640
CD4+ Naive Wb78495824
Cerebellum OC
Cerebrum frontal OC
Chorion
CLL
CMK
Colo829
Colon OC
Dnd41
ECC-1
Endometrium OC
Fibrobl
Fibrobl GM03348
FibroP
FibroP AG08395
FibroP AG08396
FibroP AG20443
Frontal cortex OC
GC B cell
Gliobla
GM04503
GM04504
GM06990
GM08714
GM10248
GM10266
GM10847
GM12801
GM12812
GM12813
GM12864
GM12865
GM12866
GM12867
GM12868
GM12869
GM12870
GM12871
GM12872
GM12873
GM12874
GM12875
GM12878
GM12878-XiMat
GM12891
GM12892
GM13976
GM13977
GM15510
GM18505
GM18507
GM18526
GM18951
GM19099
GM19193
GM19238
GM19239
GM19240
GM20000
H1-hESC
H1-neurons
H7-hESC
H9ES
HA-h
HA-sp
HAc
HAEpiC
HAoAF
HAoEC
HBMEC
HBVP
HBVSMC
HCF
HCFaa
HCH
HCM
HConF
HCPEpiC
HCT-116
Heart OC
HEEpiC
HEK293
HEK293-T-REx
HEK293T
HeLa-S3
Hepatocytes
HepG2
HFDPC
HFF
HFF-Myc
HGF
HIPEpiC
HL-60
HMEC
HMEpC
HMF
hMNC-CB
hMNC-PB
hMSC-AT
hMSC-BM
hMSC-UC
HMVEC-dAd
HMVEC-dBl-Ad
HMVEC-dBl-Neo
HMVEC-dLy-Ad
HMVEC-dLy-Neo
HMVEC-dNeo
HMVEC-LBl
HMVEC-LLy
HNPCEpiC
HOB
HPAEC
HPAEpiC
HPAF
HPC-PL
HPDE6-E6E7
HPdLF
HPF
HPIEpC
HRCEpiC
HRE
HRGEC
HRPEpiC
HSaVEC
HSMM
HSMM emb
HSMM FSHD
HSMMtube
HSMMtube FSHD
HT-1080
HTR8svn
Huh-7
Huh-7.5
HUVEC
HVMF
HWP
IMR90
iPS
iPS CWRU1
iPS hFib2 iPS4
iPS hFib2 iPS5
iPS NIHi11
iPS NIHi7
Ishikawa
Jejunum BC H12817N
Jurkat
K562
Kidney BC 01-11002
Kidney OC
Left Ventricle BC N41
Leukocyte BC UHN00204
LHCN-M2
Liver BC 01-11002
LNCaP
Lung BC 01-11002
Lung OC
M059J
MCF-7
MCF10A-Er-Src
Medullo
Medullo D341
Mel 2183
Melano
Monocytes CD14+
Monocytes CD14+ RO01746
MRT A204
MRT G401
MRT TTC549
Myometr
Naive B cell
NB4
NH-A
NHBE
NHBE RA
NHDF
NHDF-Ad
NHDF-neo
NHEK
NHEM M2
NHEM.f M2
NHLF
NT2-D1
Olfactory neurosphere
Osteoblasts
ovcar-3
PANC-1
Pancreas BC H12817N
Pancreas OC
PanIsletD
PanIslets
PBDE
PBDEFetal
PBMC
Pericardium BC H12529N
PFSK-1
pHTE
Placenta BC UHN00189
PrEC
ProgFib
Prostate
Psoas muscle OC
Raji
RCC 7860
RPMI-7951
RPTEC
RWPE1
SAEC
SH-SY5Y
SK-N-MC
SK-N-SH
SK-N-SH (Retinoic Acid)
Skeletal Muscle BC 01-11002
Skin BC 01-11002
SkMC
SkMC
Small Intestine BC 01-11002
Small intestine OC
Spleen OC
Stellate
Stomach BC 01-11002
T cells CD4+ Th0 adult
T cells CD4+ Th1 adult
T-47D
Testis BC N30
Th1
Th1 Wb33676984
Th1 Wb54553204
Th17
Th2
Th2 Wb33676984
Th2 Wb54553204
Treg Wb78495824
Treg Wb83319432
U2OS
U87
UCH-1
Urothelia
Uterus BC BN0765
WERI-Rb-1
WI-38
Cell, tissue or DNA sample
and
Antibody or target protein
Assembly originally mapped to
Cell, tissue or DNA sample
Cellular compartment
Control or Input for ChIP-seq
ENCODE Data Freeze
Experiment (Assay) type
Experiment or Input
GEO sample accession
Lab producing data
Lab provided identifier
Lab specific details
Lab specific informatics
Library Protocol
Mapping algorithm
Obtained by
Paired/Single reads lengths
Platform
Principal Investigator on grant
Replicate number
RNA Extract
Sequencing Platform
Sex of donor organism
Table name at UCSC
Treatment
UCSC Accession
View - Peaks or Signals
is among
Any
AP-2alpha (sc-8975)
AP-2gamma (sc-8977)
ARID3A (NB100-279)
ARID3A (sc-8821)
ATF1 (06-325)
ATF2 (sc-81188)
ATF3 (sc-188)
BACH1 (sc-14700)
BAF155 (sc-10756)
BAF170 (sc-10757)
BATF (sc-100974)
BCL11A (ab19489)
BCL3 (sc-185)
BCLAF1 (sc-101388)
BDP1 (2663)
BHLHE40 (NB100-1800)
BHLHE40 (sc-101023)
BRCA1 (A300-000A)
BRF1 (128)
BRF2 (4295)
BRG1 (sc-17796)
c-Fos (sc-7202)
c-Jun (sc-1694)
c-Myc (sc-764)
CBP (sc-369)
CBX2 (A302-524A)
CBX3 (sc-101004)
CBX8 (A300-882A)
CCNT2 (sc-12419)
CDP (sc-6327)
CEBPB (sc-150)
CEBPB (sc-150)
CEBPD (sc-636)
CEBPZ (SAB2100398)
CELF1 (05-621)
CHD1 (A301-218A)
CHD1 (NB100-60411)
CHD2 (ab68301)
CHD4\/Mi2 (A301-081A)
CHD7 (A301-223A)
CREB1 (sc-240)
CtBP2 (612044)
CTCF (07-729)
CTCF (sc-15914)
CTCF (sc-5916)
CTCFL (sc-98982)
E2F1 (05-379)
E2F4 (sc-866)
E2F6 (sc-22823)
EBF1 (sc-137065)
EGR1 (sc-110)
ELAVL1 (sc-5261; 07-1735)
ELF1 (sc-631)
ELK1 (1277-1)
ELK4 (sc-13030)
ERalpha a (sc-543)
ESRRA (sc-66882)
ETS1 (sc-350)
EZH2 (39875)
FOS (eGFP-FOS)
FOSL1 (sc-183)
FOSL2 (sc-604)
FOXA1 (sc-101058)
FOXA1 (sc-6553)
FOXA2 (sc-6554)
FOXM1 (sc-502)
FOXP2 (ab16046)
GABPA (sc-28312)
GATA1
GATA1 (sc-266)
GATA2
GATA2 (eGFP-GATA2)
GATA2 (sc-267)
GATA3 (sc-268)
GATA3 (sc-269)
GCN5
GR (sc-1003)
GRp20 (sc-1002)
GTF2B (sc-225)
GTF2F1 (ab28179)
H2AZ (07-594)
H3K27ac (ab4729)
H3K27me3 (07-449)
H3K27me3 (9733S)
H3K36me3 (9763S)
H3K36me3 (ab9050)
H3K4me1 (ab8895)
H3K4me1 (pAb-037-050)
H3K4me2 (ab7766)
H3K4me3 (07-473)
H3K4me3 (9751S)
H3K79me2 (39143)
H3K9ac (07-352)
H3K9ac (ab4441)
H3K9me1 (ab8896)
H3K9me3 (ab8898)
H4K20me1 (ab9051)
HA-E2F1 (MMS-101P)
HCFC1 (NB100-68209)
HDAC1 (sc-6298)
HDAC2 (A300-705A)
HDAC2 (sc-6296)
HDAC6 (A301-341A)
HDAC8 (eGFP-HDAC8)
HEY1 (sc-16424)
HMGN3 (NB100-61076)
HNF4A (sc-6556)
HNF4A (sc-8987)
HNF4G (sc-6558)
HSF1 (sc-9144)
IGF2BP1 (07-104)
IKZF1 (IKZF1 (IkN))
INI1 (sc-16189)
IRF1 (sc-497)
IRF3 (sc-9082)
IRF4 (sc-6059)
JARID1A (ab26049)
JMJD2A (A300-861A)
JUNB (eGFP-JunB)
JUND (eGFP-JUND)
JUND (sc-74)
KAP1 (ab10483)
LSD1\/KDM1A (A300-215A)
MAFF (M8194)
MAFK (ab50322)
MAFK (sc-477)
MAX (sc-197)
MAZ (ab85725)
MBD4 (sc-271530)
MEF2A (sc-313)
MEF2C (sc-13268)
MTA3 (sc-81325)
MXI1 (AF4185)
MYBL2 (sc-81192)
NANOG (sc-33759)
NCoR (A301-145A)
NELF-E (sc-32912)
NF-E2 (sc-22827)
NF-E2 (sc-291)
NF-YA
NF-YB
NFATC1 (sc-17834)
NFIC (sc-81335)
NFKB (sc-372)
NR2F2 (sc-271940)
NR4A1 (eGFP-NR4A1)
NRF1 (ab55744)
NRSF
NSD2 (ab75359)
P300\/EP300 (sc-48343)
P300\/EP300 (sc-584)
P300\/EP300 (sc-585)
P300\/EP300\/KAT3B (A300-358A)
PABPC1 (04-1467)
PAX5 (sc-1974)
PAX5 (sc-1975)
PBX3 (sc-891)
PCAF\/KAT2B (A301-666A)
PGC1A (sc-13067)
PHF8 (A301-772A)
PLU-1
PML (sc-71910)
POL III(sc-21754)
POL2 (MMS-126R)
POL2 (phospho S2) (ab5095)
Pol2-4H8 (ab5408)
POL2A (MMS-128P)
POU2F2 (sc-233)
POU5F1 (sc-9081)
PRDM1 (9115)
PU.1 (sc-22805)
RAD21 (ab992)
RBBP5 (A300-109A)
RCOR1\/COREST (ab24166)
RCOR1\/COREST (sc30189)
REST (17-641)
RFX5 (200-401-194)
RNF2 (A302-869A)
RPC155 (1900)
RUNX3 (sc-101553)
RXRA (sc-553)
SAP30 (39731)
SETDB1 (11231-1-AP)
SIN3A (NB600-1263)
SIN3AK20 (sc-994)
SIRT6 (ab48192)
SIX5 (sc-55706)
SLBP (06-1376)
SMC3 (ab9263)
SP1 (sc-17824)
SP2 (sc-643)
SP4 (sc-645)
SPT20/FAM48A (3006)
SREBP1 (sc-8984)
SREBP2 (10007663)
SRF (sc-335)
STAT1 (sc-345)
STAT2 (sc-476X)
STAT3 (sc-482)
STAT5A (sc-74442)
SUZ12 (05-1317)
SUZ12 (SUZ12)
T7Tag (AB3790)
TAF1 (sc-735)
TAF7 (sc-101167)
TAL1 (sc-12984)
TBLR1 (ab24550)
TBLR1 (NB600-270)
TBP (ab62126)
TCF12 (sc-357)
TCF3 (sc-349)
TCF7L2 (2569)
TCF7L2 C9B9 (2565)
TEAD4 (sc-101184)
TFIIIC-110 (4286)
THAP1 (sc-98174)
TR4
TRIM28 (sc-81411)
UBF (sc-13125)
UBTF (SAB1404509)
USF1 (sc-229)
USF1 (sc-8983)
USF2 (ab60931)
WHIP (ab4731)
XRCC4 (ab145)
YY1 (sc-1703)
YY1 (sc-281)
ZBTB33 (sc-23871)
ZBTB7A (sc-34508)
ZC3H11A (NB100-74650)
ZEB1 (sc-25388)
ZKSCAN1 (HPA006672)
ZMIZ1 (ab65767)
ZNF143 (16618-1-AP)
ZNF217 (ZNF217)
ZNF263 (H00010127-A01)
ZNF274 (H00010782-A01)
ZNF274 (H00010782-M01)
ZNF384 (HPA004051)
ZZZ3
Antibody or target protein