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Configure Tracks on UCSC Genome Browser: Human Feb. 2009 (GRCh37/hg19)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Hub: Roadmap Epigenomics Integrative Analysis Hub    
Con. By Assay Roadmap Consolidated Analysis hub organized by assay
     RNA-Seq     RNA-Seq tracks from Roadmap
     methylC-Seq     methylC-Seq tracks from Roadmap
     H4K91ac     H4K91ac tracks from Roadmap
     H4K8ac     H4K8ac tracks from Roadmap
     H4K5ac     H4K5ac tracks from Roadmap
     H4K20me1     H4K20me1 tracks from Roadmap
     H4K12ac     H4K12ac tracks from Roadmap
     H3T11ph     H3T11ph tracks from Roadmap
     H3K9me3     H3K9me3 tracks from Roadmap
     H3K9me1     H3K9me1 tracks from Roadmap
     H3K9ac     H3K9ac tracks from Roadmap
     H3K79me2     H3K79me2 tracks from Roadmap
     H3K79me1     H3K79me1 tracks from Roadmap
     H3K56ac     H3K56ac tracks from Roadmap
     H3K4me3     H3K4me3 tracks from Roadmap
     H3K4me2     H3K4me2 tracks from Roadmap
     H3K4me1     H3K4me1 tracks from Roadmap
     H3K4ac     H3K4ac tracks from Roadmap
     H3K36me3     H3K36me3 tracks from Roadmap
     H3K27me3     H3K27me3 tracks from Roadmap
     H3K27ac     H3K27ac tracks from Roadmap
     H3K23me2     H3K23me2 tracks from Roadmap
     H3K23ac     H3K23ac tracks from Roadmap
     H3K18ac     H3K18ac tracks from Roadmap
     H3K14ac     H3K14ac tracks from Roadmap
     H2BK5ac     H2BK5ac tracks from Roadmap
     H2BK20ac     H2BK20ac tracks from Roadmap
     H2BK15ac     H2BK15ac tracks from Roadmap
     H2BK12ac     H2BK12ac tracks from Roadmap
     H2BK120ac     H2BK120ac tracks from Roadmap
     H2AK9ac     H2AK9ac tracks from Roadmap
     H2AK5ac     H2AK5ac tracks from Roadmap
     H2A.Z     H2A.Z tracks from Roadmap
     DNase hypersensitivity     DNase hypersensitivity tracks from Roadmap
     chromHMM     chromHMM tracks from Roadmap
Con. By Sample Roadmap Consolidated Analysis hub organized by sample
     WA-7     WA-7 tracks from Roadmap
     UCSF-4star     UCSF-4star tracks from Roadmap
     Thymus     Thymus tracks from Roadmap
     Stomach Smooth Muscle     Stomach Smooth Muscle tracks from Roadmap
     Stomach Mucosa     Stomach Mucosa tracks from Roadmap
     Spleen     Spleen tracks from Roadmap
     Small_Intestine     Small_Intestine tracks from Roadmap
     Skeletal Muscle     Skeletal Muscle tracks from Roadmap
     Sigmoid_Colon     Sigmoid_Colon tracks from Roadmap
     Right_Ventricle     Right_Ventricle tracks from Roadmap
     Right_Atrium     Right_Atrium tracks from Roadmap
     Rectal Smooth Muscle     Rectal Smooth Muscle tracks from Roadmap
     Rectal Mucosa     Rectal Mucosa tracks from Roadmap
     Psoas_Muscle     Psoas_Muscle tracks from Roadmap
     Placenta_Amnion     Placenta_Amnion tracks from Roadmap
     Peripheral Blood Mononuclear Primary cells     Peripheral Blood Mononuclear Primary cells tracks from Roadmap
     Penis Foreskin Melanocyte Primary Cells     Penis Foreskin Melanocyte Primary Cells tracks from Roadmap
     Penis Foreskin Keratinocyte Primary Cells     Penis Foreskin Keratinocyte Primary Cells tracks from Roadmap
     Penis Foreskin Fibroblast Primary Cells     Penis Foreskin Fibroblast Primary Cells tracks from Roadmap
     PanIslets     PanIslets tracks from Roadmap
     Pancreas     Pancreas tracks from Roadmap
     Ovary     Ovary tracks from Roadmap
     Osteobl     Osteobl tracks from Roadmap
     NHLF     NHLF tracks from Roadmap
     NHEK     NHEK tracks from Roadmap
     NHDF-Ad     NHDF-Ad tracks from Roadmap
     NH-A     NH-A tracks from Roadmap
     Neurospheres, Ganglionic Eminence Derived     Neurospheres, Ganglionic Eminence Derived tracks from Roadmap
     Neurospheres, Cortex Derived     Neurospheres, Cortex Derived tracks from Roadmap
     Muscle Satellite Cultured Cells     Muscle Satellite Cultured Cells tracks from Roadmap
     Monocytes-CD14+     Monocytes-CD14+ tracks from Roadmap
     Mobilized CD34 Primary cells     Mobilized CD34 Primary cells tracks from Roadmap
     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells tracks from Roadmap
     Lung     Lung tracks from Roadmap
     Left_Ventricle     Left_Ventricle tracks from Roadmap
     K562     K562 tracks from Roadmap
     iPS DF 6.9     iPS DF 6.9 tracks from Roadmap
     iPS DF 19.11     iPS DF 19.11 tracks from Roadmap
     IMR90     IMR90 tracks from Roadmap
     HUVEC     HUVEC tracks from Roadmap
     HUES64     HUES64 tracks from Roadmap
     HUES6     HUES6 tracks from Roadmap
     HUES48     HUES48 tracks from Roadmap
     HSMMtube     HSMMtube tracks from Roadmap
     HSMM     HSMM tracks from Roadmap
     HMEC     HMEC tracks from Roadmap
     hiPS-20b     hiPS-20b tracks from Roadmap
     hiPS-18b     hiPS-18b tracks from Roadmap
     hiPS-15b     hiPS-15b tracks from Roadmap
     hESC_Derived_CD56+_Mesoderm_Cultured_Cells     hESC_Derived_CD56+_Mesoderm_Cultured_Cells tracks from Roadmap
     hESC_Derived_CD56+_Ectoderm_Cultured_Cells     hESC_Derived_CD56+_Ectoderm_Cultured_Cells tracks from Roadmap
     hESC Derived CD184+ Endoderm Cultured Cells     hESC Derived CD184+ Endoderm Cultured Cells tracks from Roadmap
     hES-I3     hES-I3 tracks from Roadmap
     HepG2     HepG2 tracks from Roadmap
     HeLa-S3     HeLa-S3 tracks from Roadmap
     H9 Derived Neuronal Progenitor Cultured Cells     H9 Derived Neuronal Progenitor Cultured Cells tracks from Roadmap
     H9 Derived Neuron Cultured Cells     H9 Derived Neuron Cultured Cells tracks from Roadmap
     H9     H9 tracks from Roadmap
     H1 Derived Neuronal Progenitor Cultured Cells     H1 Derived Neuronal Progenitor Cultured Cells tracks from Roadmap
     H1 Derived Mesenchymal Stem Cells     H1 Derived Mesenchymal Stem Cells tracks from Roadmap
     H1 BMP4 Derived Trophoblast Cultured Cells     H1 BMP4 Derived Trophoblast Cultured Cells tracks from Roadmap
     H1 BMP4 Derived Mesendoderm Cultured Cells     H1 BMP4 Derived Mesendoderm Cultured Cells tracks from Roadmap
     H1     H1 tracks from Roadmap
     GM12878     GM12878 tracks from Roadmap
     Gastric     Gastric tracks from Roadmap
     Fetal_Thymus     Fetal_Thymus tracks from Roadmap
     Fetal_Stomach     Fetal_Stomach tracks from Roadmap
     Fetal_Muscle_Trunk     Fetal_Muscle_Trunk tracks from Roadmap
     Fetal_Muscle_Leg     Fetal_Muscle_Leg tracks from Roadmap
     Fetal_Intestine_Small     Fetal_Intestine_Small tracks from Roadmap
     Fetal_Intestine_Large     Fetal_Intestine_Large tracks from Roadmap
     Fetal_Adrenal_Gland     Fetal_Adrenal_Gland tracks from Roadmap
     Fetal Placenta     Fetal Placenta tracks from Roadmap
     Fetal Lung     Fetal Lung tracks from Roadmap
     Fetal Kidney     Fetal Kidney tracks from Roadmap
     Fetal Heart     Fetal Heart tracks from Roadmap
     Fetal Brain     Fetal Brain tracks from Roadmap
     Esophagus     Esophagus tracks from Roadmap
     Duodenum Smooth Muscle     Duodenum Smooth Muscle tracks from Roadmap
     Duodenum Mucosa     Duodenum Mucosa tracks from Roadmap
     Dnd41     Dnd41 tracks from Roadmap
     Colonic Mucosa     Colonic Mucosa tracks from Roadmap
     Colon Smooth Muscle     Colon Smooth Muscle tracks from Roadmap
     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks from Roadmap
     CD8_Memory_Primary_Cells     CD8_Memory_Primary_Cells tracks from Roadmap
     CD8 Naive Primary cells     CD8 Naive Primary cells tracks from Roadmap
     CD56 primary cells     CD56 primary cells tracks from Roadmap
     CD4+_CD25int_CD127+_Tmem_Primary_Cells     CD4+_CD25int_CD127+_Tmem_Primary_Cells tracks from Roadmap
     CD4+_CD25-_Th_Primary_Cells     CD4+_CD25-_Th_Primary_Cells tracks from Roadmap
     CD4+_CD25-_IL17-_PMA-Ionomycin_stimulated_MACS_purified_Th_Primary_Cells     CD4+_CD25-_IL17-_PMA-Ionomycin_stimulated_MACS_purified_Th_Primary_Cells tracks from Roadmap
     CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells     CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells tracks from Roadmap
     CD4+_CD25-_CD45RO+_Memory_Primary_Cells     CD4+_CD25-_CD45RO+_Memory_Primary_Cells tracks from Roadmap
     CD4+_CD25-_CD45RA+_Naive_Primary_Cells     CD4+_CD25-_CD45RA+_Naive_Primary_Cells tracks from Roadmap
     CD4+_CD25+_CD127-_Treg_Primary_Cells     CD4+_CD25+_CD127-_Treg_Primary_Cells tracks from Roadmap
     CD4 Naive Primary cells     CD4 Naive Primary cells tracks from Roadmap
     CD4 Memory Primary cells     CD4 Memory Primary cells tracks from Roadmap
     CD34 Primary cells     CD34 Primary cells tracks from Roadmap
     CD34 cultured cells     CD34 cultured cells tracks from Roadmap
     CD3 Primary cells     CD3 Primary cells tracks from Roadmap
     CD19 Primary cells     CD19 Primary cells tracks from Roadmap
     CD15 Primary cells     CD15 Primary cells tracks from Roadmap
     CD14 primary cells     CD14 primary cells tracks from Roadmap
     Breast vHMEC     Breast vHMEC tracks from Roadmap
     Breast Myoepithelial cells     Breast Myoepithelial cells tracks from Roadmap
     Brain Substantia Nigra     Brain Substantia Nigra tracks from Roadmap
     Brain Mid Frontal Lobe     Brain Mid Frontal Lobe tracks from Roadmap
     Brain Inferior Temporal Lobe     Brain Inferior Temporal Lobe tracks from Roadmap
     Brain Hippocampus Middle     Brain Hippocampus Middle tracks from Roadmap
     Brain Germinal Matrix     Brain Germinal Matrix tracks from Roadmap
     Brain Cingulate Gyrus     Brain Cingulate Gyrus tracks from Roadmap
     Brain Anterior Caudate     Brain Anterior Caudate tracks from Roadmap
     Brain Angular Gyrus     Brain Angular Gyrus tracks from Roadmap
     Bone Marrow Derived Mesenchymal Stem cell     Bone Marrow Derived Mesenchymal Stem cell tracks from Roadmap
     Aorta     Aorta tracks from Roadmap
     Adult Liver     Adult Liver tracks from Roadmap
     Adipose Nuclei     Adipose Nuclei tracks from Roadmap
     Adipose Derived Mesenchymal Stem Cell Cultured Cells     Adipose Derived Mesenchymal Stem Cell Cultured Cells tracks from Roadmap
     A549     A549 tracks from Roadmap
Con. By EID Roadmap Consolidated Analysis hub organized by reference Epigenome ID (EID)
     E129-Osteobl     E129-Osteobl tracks from Roadmap
     E128-NHLF     E128-NHLF tracks from Roadmap
     E127-NHEK     E127-NHEK tracks from Roadmap
     E126-NHDF-Ad     E126-NHDF-Ad tracks from Roadmap
     E125-NH-A     E125-NH-A tracks from Roadmap
     E124-Monocytes-CD14+     E124-Monocytes-CD14+ tracks from Roadmap
     E123-K562     E123-K562 tracks from Roadmap
     E122-HUVEC     E122-HUVEC tracks from Roadmap
     E121-HSMMtube     E121-HSMMtube tracks from Roadmap
     E120-HSMM     E120-HSMM tracks from Roadmap
     E119-HMEC     E119-HMEC tracks from Roadmap
     E118-HepG2     E118-HepG2 tracks from Roadmap
     E117-HeLa-S3     E117-HeLa-S3 tracks from Roadmap
     E116-GM12878     E116-GM12878 tracks from Roadmap
     E115-Dnd41     E115-Dnd41 tracks from Roadmap
     E114-A549     E114-A549 tracks from Roadmap
     E113-Spleen     E113-Spleen tracks from Roadmap
     E112-Thymus     E112-Thymus tracks from Roadmap
     E111-Stomach Smooth Muscle     E111-Stomach Smooth Muscle tracks from Roadmap
     E110-Stomach Mucosa     E110-Stomach Mucosa tracks from Roadmap
     E109-Small_Intestine     E109-Small_Intestine tracks from Roadmap
     E108-Skeletal Muscle     E108-Skeletal Muscle tracks from Roadmap
     E107-Skeletal Muscle     E107-Skeletal Muscle tracks from Roadmap
     E106-Sigmoid_Colon     E106-Sigmoid_Colon tracks from Roadmap
     E105-Right_Ventricle     E105-Right_Ventricle tracks from Roadmap
     E104-Right_Atrium     E104-Right_Atrium tracks from Roadmap
     E103-Rectal Smooth Muscle     E103-Rectal Smooth Muscle tracks from Roadmap
     E102-Rectal Mucosa     E102-Rectal Mucosa tracks from Roadmap
     E101-Rectal Mucosa     E101-Rectal Mucosa tracks from Roadmap
     E100-Psoas_Muscle     E100-Psoas_Muscle tracks from Roadmap
     E099-Placenta_Amnion     E099-Placenta_Amnion tracks from Roadmap
     E098-Pancreas     E098-Pancreas tracks from Roadmap
     E097-Ovary     E097-Ovary tracks from Roadmap
     E096-Lung     E096-Lung tracks from Roadmap
     E095-Left_Ventricle     E095-Left_Ventricle tracks from Roadmap
     E094-Gastric     E094-Gastric tracks from Roadmap
     E093-Fetal_Thymus     E093-Fetal_Thymus tracks from Roadmap
     E092-Fetal_Stomach     E092-Fetal_Stomach tracks from Roadmap
     E091-Fetal Placenta     E091-Fetal Placenta tracks from Roadmap
     E090-Fetal_Muscle_Leg     E090-Fetal_Muscle_Leg tracks from Roadmap
     E089-Fetal_Muscle_Trunk     E089-Fetal_Muscle_Trunk tracks from Roadmap
     E088-Fetal Lung     E088-Fetal Lung tracks from Roadmap
     E087-PanIslets     E087-PanIslets tracks from Roadmap
     E086-Fetal Kidney     E086-Fetal Kidney tracks from Roadmap
     E085-Fetal_Intestine_Small     E085-Fetal_Intestine_Small tracks from Roadmap
     E084-Fetal_Intestine_Large     E084-Fetal_Intestine_Large tracks from Roadmap
     E083-Fetal Heart     E083-Fetal Heart tracks from Roadmap
     E082-Fetal Brain     E082-Fetal Brain tracks from Roadmap
     E081-Fetal Brain     E081-Fetal Brain tracks from Roadmap
     E080-Fetal_Adrenal_Gland     E080-Fetal_Adrenal_Gland tracks from Roadmap
     E079-Esophagus     E079-Esophagus tracks from Roadmap
     E078-Duodenum Smooth Muscle     E078-Duodenum Smooth Muscle tracks from Roadmap
     E077-Duodenum Mucosa     E077-Duodenum Mucosa tracks from Roadmap
     E076-Colon Smooth Muscle     E076-Colon Smooth Muscle tracks from Roadmap
     E075-Colonic Mucosa     E075-Colonic Mucosa tracks from Roadmap
     E074-Brain Substantia Nigra     E074-Brain Substantia Nigra tracks from Roadmap
     E073-Brain Mid Frontal Lobe     E073-Brain Mid Frontal Lobe tracks from Roadmap
     E072-Brain Inferior Temporal Lobe     E072-Brain Inferior Temporal Lobe tracks from Roadmap
     E071-Brain Hippocampus Middle     E071-Brain Hippocampus Middle tracks from Roadmap
     E070-Brain Germinal Matrix     E070-Brain Germinal Matrix tracks from Roadmap
     E069-Brain Cingulate Gyrus     E069-Brain Cingulate Gyrus tracks from Roadmap
     E068-Brain Anterior Caudate     E068-Brain Anterior Caudate tracks from Roadmap
     E067-Brain Angular Gyrus     E067-Brain Angular Gyrus tracks from Roadmap
     E066-Adult Liver     E066-Adult Liver tracks from Roadmap
     E065-Aorta     E065-Aorta tracks from Roadmap
     E063-Adipose Nuclei     E063-Adipose Nuclei tracks from Roadmap
     E062-Peripheral Blood Mononuclear Primary cells     E062-Peripheral Blood Mononuclear Primary cells tracks from Roadmap
     E061-Penis Foreskin Melanocyte Primary Cells     E061-Penis Foreskin Melanocyte Primary Cells tracks from Roadmap
     E059-Penis Foreskin Melanocyte Primary Cells     E059-Penis Foreskin Melanocyte Primary Cells tracks from Roadmap
     E058-Penis Foreskin Keratinocyte Primary Cells     E058-Penis Foreskin Keratinocyte Primary Cells tracks from Roadmap
     E057-Penis Foreskin Keratinocyte Primary Cells     E057-Penis Foreskin Keratinocyte Primary Cells tracks from Roadmap
     E056-Penis Foreskin Fibroblast Primary Cells     E056-Penis Foreskin Fibroblast Primary Cells tracks from Roadmap
     E055-Penis Foreskin Fibroblast Primary Cells     E055-Penis Foreskin Fibroblast Primary Cells tracks from Roadmap
     E054-Neurospheres, Ganglionic Eminence Derived     E054-Neurospheres, Ganglionic Eminence Derived tracks from Roadmap
     E053-Neurospheres, Cortex Derived     E053-Neurospheres, Cortex Derived tracks from Roadmap
     E052-Muscle Satellite Cultured Cells     E052-Muscle Satellite Cultured Cells tracks from Roadmap
     E051-Mobilized CD34 Primary cells     E051-Mobilized CD34 Primary cells tracks from Roadmap
     E050-Mobilized CD34 Primary cells     E050-Mobilized CD34 Primary cells tracks from Roadmap
     E049-Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells     E049-Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks from Roadmap
     E048-CD8_Memory_Primary_Cells     E048-CD8_Memory_Primary_Cells tracks from Roadmap
     E047-CD8 Naive Primary cells     E047-CD8 Naive Primary cells tracks from Roadmap
     E046-CD56 primary cells     E046-CD56 primary cells tracks from Roadmap
     E045-CD4+_CD25int_CD127+_Tmem_Primary_Cells     E045-CD4+_CD25int_CD127+_Tmem_Primary_Cells tracks from Roadmap
     E044-CD4+_CD25+_CD127-_Treg_Primary_Cells     E044-CD4+_CD25+_CD127-_Treg_Primary_Cells tracks from Roadmap
     E043-CD4+_CD25-_Th_Primary_Cells     E043-CD4+_CD25-_Th_Primary_Cells tracks from Roadmap
     E042-CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells     E042-CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells tracks from Roadmap
     E041-CD4+_CD25-_IL17-_PMA-Ionomycin_stimulated_MACS_purified_Th_Primary_Cells     E041-CD4+_CD25-_IL17-_PMA-Ionomycin_stimulated_MACS_purified_Th_Primary_Cells tracks from Roadmap
     E040-CD4+_CD25-_CD45RO+_Memory_Primary_Cells     E040-CD4+_CD25-_CD45RO+_Memory_Primary_Cells tracks from Roadmap
     E039-CD4+_CD25-_CD45RA+_Naive_Primary_Cells     E039-CD4+_CD25-_CD45RA+_Naive_Primary_Cells tracks from Roadmap
     E038-CD4 Naive Primary cells     E038-CD4 Naive Primary cells tracks from Roadmap
     E037-CD4 Memory Primary cells     E037-CD4 Memory Primary cells tracks from Roadmap
     E036-CD34 cultured cells     E036-CD34 cultured cells tracks from Roadmap
     E035-CD34 Primary cells     E035-CD34 Primary cells tracks from Roadmap
     E034-CD3 Primary cells     E034-CD3 Primary cells tracks from Roadmap
     E033-CD3 Primary cells     E033-CD3 Primary cells tracks from Roadmap
     E032-CD19 Primary cells     E032-CD19 Primary cells tracks from Roadmap
     E031-CD19 Primary cells     E031-CD19 Primary cells tracks from Roadmap
     E030-CD15 Primary cells     E030-CD15 Primary cells tracks from Roadmap
     E029-CD14 primary cells     E029-CD14 primary cells tracks from Roadmap
     E028-Breast vHMEC     E028-Breast vHMEC tracks from Roadmap
     E027-Breast Myoepithelial cells     E027-Breast Myoepithelial cells tracks from Roadmap
     E026-Bone Marrow Derived Mesenchymal Stem cell     E026-Bone Marrow Derived Mesenchymal Stem cell tracks from Roadmap
     E025-Adipose Derived Mesenchymal Stem Cell Cultured Cells     E025-Adipose Derived Mesenchymal Stem Cell Cultured Cells tracks from Roadmap
     E024-UCSF-4star     E024-UCSF-4star tracks from Roadmap
     E023-Mesenchymal Stem Cell Derived Adipocyte Cultured Cells     E023-Mesenchymal Stem Cell Derived Adipocyte Cultured Cells tracks from Roadmap
     E022-iPS DF 19.11     E022-iPS DF 19.11 tracks from Roadmap
     E021-iPS DF 6.9     E021-iPS DF 6.9 tracks from Roadmap
     E020-hiPS-20b     E020-hiPS-20b tracks from Roadmap
     E019-hiPS-18b     E019-hiPS-18b tracks from Roadmap
     E018-hiPS-15b     E018-hiPS-15b tracks from Roadmap
     E017-IMR90     E017-IMR90 tracks from Roadmap
     E016-HUES64     E016-HUES64 tracks from Roadmap
     E015-HUES6     E015-HUES6 tracks from Roadmap
     E014-HUES48     E014-HUES48 tracks from Roadmap
     E013-hESC_Derived_CD56+_Mesoderm_Cultured_Cells     E013-hESC_Derived_CD56+_Mesoderm_Cultured_Cells tracks from Roadmap
     E012-hESC_Derived_CD56+_Ectoderm_Cultured_Cells     E012-hESC_Derived_CD56+_Ectoderm_Cultured_Cells tracks from Roadmap
     E011-hESC Derived CD184+ Endoderm Cultured Cells     E011-hESC Derived CD184+ Endoderm Cultured Cells tracks from Roadmap
     E010-H9 Derived Neuron Cultured Cells     E010-H9 Derived Neuron Cultured Cells tracks from Roadmap
     E009-H9 Derived Neuronal Progenitor Cultured Cells     E009-H9 Derived Neuronal Progenitor Cultured Cells tracks from Roadmap
     E008-H9     E008-H9 tracks from Roadmap
     E007-H1 Derived Neuronal Progenitor Cultured Cells     E007-H1 Derived Neuronal Progenitor Cultured Cells tracks from Roadmap
     E006-H1 Derived Mesenchymal Stem Cells     E006-H1 Derived Mesenchymal Stem Cells tracks from Roadmap
     E005-H1 BMP4 Derived Trophoblast Cultured Cells     E005-H1 BMP4 Derived Trophoblast Cultured Cells tracks from Roadmap
     E004-H1 BMP4 Derived Mesendoderm Cultured Cells     E004-H1 BMP4 Derived Mesendoderm Cultured Cells tracks from Roadmap
     E003-H1     E003-H1 tracks from Roadmap
     E002-WA-7     E002-WA-7 tracks from Roadmap
     E001-hES-I3     E001-hES-I3 tracks from Roadmap
Uncon. By Assay Roadmap Unconsolidated Analysis hub organized by assay
     H4K91ac     H4K91ac tracks from Roadmap
     H4K8ac     H4K8ac tracks from Roadmap
     H4K5ac     H4K5ac tracks from Roadmap
     H4K20me1     H4K20me1 tracks from Roadmap
     H4K12ac     H4K12ac tracks from Roadmap
     H3T11ph     H3T11ph tracks from Roadmap
     H3K9me3     H3K9me3 tracks from Roadmap
     H3K9me1     H3K9me1 tracks from Roadmap
     H3K9ac     H3K9ac tracks from Roadmap
     H3K79me2     H3K79me2 tracks from Roadmap
     H3K79me1     H3K79me1 tracks from Roadmap
     H3K56ac     H3K56ac tracks from Roadmap
     H3K4me3     H3K4me3 tracks from Roadmap
     H3K4me2     H3K4me2 tracks from Roadmap
     H3K4me1     H3K4me1 tracks from Roadmap
     H3K4ac     H3K4ac tracks from Roadmap
     H3K36me3     H3K36me3 tracks from Roadmap
     H3K27me3     H3K27me3 tracks from Roadmap
     H3K27ac     H3K27ac tracks from Roadmap
     H3K23me2     H3K23me2 tracks from Roadmap
     H3K23ac     H3K23ac tracks from Roadmap
     H3K18ac     H3K18ac tracks from Roadmap
     H3K14ac     H3K14ac tracks from Roadmap
     H2BK5ac     H2BK5ac tracks from Roadmap
     H2BK20ac     H2BK20ac tracks from Roadmap
     H2BK15ac     H2BK15ac tracks from Roadmap
     H2BK12ac     H2BK12ac tracks from Roadmap
     H2BK120ac     H2BK120ac tracks from Roadmap
     H2AK9ac     H2AK9ac tracks from Roadmap
     H2AK5ac     H2AK5ac tracks from Roadmap
     H2A.Z     H2A.Z tracks from Roadmap
     DNase hypersensitivity     DNase hypersensitivity tracks from Roadmap
     Digital Genomic Footprinting     Digital Genomic Footprinting tracks from Roadmap
Uncon. By Sample Roadmap Unconsolidated Analysis hub organized by sample
     WA-7     WA-7 tracks from Roadmap
     UCSF-4star     UCSF-4star tracks from Roadmap
     Treg Primary cells     Treg Primary cells tracks from Roadmap
     Thymus     Thymus tracks from Roadmap
     Th17     Th17 tracks from Roadmap
     Stomach Smooth Muscle     Stomach Smooth Muscle tracks from Roadmap
     Stomach Mucosa     Stomach Mucosa tracks from Roadmap
     Spleen     Spleen tracks from Roadmap
     Small_Intestine     Small_Intestine tracks from Roadmap
     Skeletal Muscle     Skeletal Muscle tracks from Roadmap
     Sigmoid_Colon     Sigmoid_Colon tracks from Roadmap
     Right_Ventricle     Right_Ventricle tracks from Roadmap
     Right_Atrium     Right_Atrium tracks from Roadmap
     Rectal Smooth Muscle     Rectal Smooth Muscle tracks from Roadmap
     Rectal Mucosa     Rectal Mucosa tracks from Roadmap
     Psoas_Muscle     Psoas_Muscle tracks from Roadmap
     Placenta_Chorion_Smooth     Placenta_Chorion_Smooth tracks from Roadmap
     Placenta_Amnion     Placenta_Amnion tracks from Roadmap
     Peripheral Blood Mononuclear Primary cells     Peripheral Blood Mononuclear Primary cells tracks from Roadmap
     Penis Foreskin Melanocyte Primary Cells     Penis Foreskin Melanocyte Primary Cells tracks from Roadmap
     Penis Foreskin Keratinocyte Primary Cells     Penis Foreskin Keratinocyte Primary Cells tracks from Roadmap
     Penis Foreskin Fibroblast Primary Cells     Penis Foreskin Fibroblast Primary Cells tracks from Roadmap
     PanIslets     PanIslets tracks from Roadmap
     Pancreas     Pancreas tracks from Roadmap
     Ovary     Ovary tracks from Roadmap
     Neurospheres, Ganglionic Eminence Derived     Neurospheres, Ganglionic Eminence Derived tracks from Roadmap
     Neurospheres, Cortex Derived     Neurospheres, Cortex Derived tracks from Roadmap
     Muscle Satellite Cultured Cells     Muscle Satellite Cultured Cells tracks from Roadmap
     Mobilized CD8 primary cells     Mobilized CD8 primary cells tracks from Roadmap
     Mobilized CD56 Primary Cells     Mobilized CD56 Primary Cells tracks from Roadmap
     Mobilized CD4 Primary cells     Mobilized CD4 Primary cells tracks from Roadmap
     Mobilized CD34 Primary cells     Mobilized CD34 Primary cells tracks from Roadmap
     Mobilized CD3 primary cells     Mobilized CD3 primary cells tracks from Roadmap
     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells     Mesenchymal Stem Cell Derived Adipocyte Cultured Cells tracks from Roadmap
     Lung     Lung tracks from Roadmap
     Left_Ventricle     Left_Ventricle tracks from Roadmap
     iPS DF 6.9     iPS DF 6.9 tracks from Roadmap
     iPS DF 4.7     iPS DF 4.7 tracks from Roadmap
     iPS DF 19.7     iPS DF 19.7 tracks from Roadmap
     iPS DF 19.11     iPS DF 19.11 tracks from Roadmap
     IMR90     IMR90 tracks from Roadmap
     HUES64     HUES64 tracks from Roadmap
     HUES6     HUES6 tracks from Roadmap
     HUES48     HUES48 tracks from Roadmap
     hiPS-20b     hiPS-20b tracks from Roadmap
     hiPS-18c     hiPS-18c tracks from Roadmap
     hiPS-18a     hiPS-18a tracks from Roadmap
     hiPS-15b     hiPS-15b tracks from Roadmap
     hiPS-11a     hiPS-11a tracks from Roadmap
     hESC_Derived_CD56+_Mesoderm_Cultured_Cells     hESC_Derived_CD56+_Mesoderm_Cultured_Cells tracks from Roadmap
     hESC_Derived_CD56+_Ectoderm_Cultured_Cells     hESC_Derived_CD56+_Ectoderm_Cultured_Cells tracks from Roadmap
     hESC Derived CD184+ Endoderm Cultured Cells     hESC Derived CD184+ Endoderm Cultured Cells tracks from Roadmap
     hES-I3     hES-I3 tracks from Roadmap
     Heart     Heart tracks from Roadmap
     H9 Derived Neuronal Progenitor Cultured Cells     H9 Derived Neuronal Progenitor Cultured Cells tracks from Roadmap
     H9 Derived Neuron Cultured Cells     H9 Derived Neuron Cultured Cells tracks from Roadmap
     H9     H9 tracks from Roadmap
     H1 Derived Neuronal Progenitor Cultured Cells     H1 Derived Neuronal Progenitor Cultured Cells tracks from Roadmap
     H1 Derived Mesenchymal Stem Cells     H1 Derived Mesenchymal Stem Cells tracks from Roadmap
     H1 BMP4 Derived Trophoblast Cultured Cells     H1 BMP4 Derived Trophoblast Cultured Cells tracks from Roadmap
     H1 BMP4 Derived Mesendoderm Cultured Cells     H1 BMP4 Derived Mesendoderm Cultured Cells tracks from Roadmap
     H1     H1 tracks from Roadmap
     Gastric     Gastric tracks from Roadmap
     Fibroblasts Fetal Skin Upper Back     Fibroblasts Fetal Skin Upper Back tracks from Roadmap
     Fibroblasts Fetal Skin Scalp     Fibroblasts Fetal Skin Scalp tracks from Roadmap
     Fibroblasts Fetal Skin Quadriceps Right     Fibroblasts Fetal Skin Quadriceps Right tracks from Roadmap
     Fibroblasts Fetal Skin Quadriceps Left     Fibroblasts Fetal Skin Quadriceps Left tracks from Roadmap
     Fibroblasts Fetal Skin Biceps Right     Fibroblasts Fetal Skin Biceps Right tracks from Roadmap
     Fibroblasts Fetal Skin Biceps Left     Fibroblasts Fetal Skin Biceps Left tracks from Roadmap
     Fibroblasts Fetal Skin Back     Fibroblasts Fetal Skin Back tracks from Roadmap
     Fibroblasts Fetal Skin Abdomen     Fibroblasts Fetal Skin Abdomen tracks from Roadmap
     Fetal_Thymus     Fetal_Thymus tracks from Roadmap
     Fetal_Stomach     Fetal_Stomach tracks from Roadmap
     Fetal_Spleen     Fetal_Spleen tracks from Roadmap
     Fetal_Renal_Pelvis_Right     Fetal_Renal_Pelvis_Right tracks from Roadmap
     Fetal_Renal_Pelvis_Left     Fetal_Renal_Pelvis_Left tracks from Roadmap
     Fetal_Renal_Pelvis     Fetal_Renal_Pelvis tracks from Roadmap
     Fetal_Renal_Cortex_Right     Fetal_Renal_Cortex_Right tracks from Roadmap
     Fetal_Renal_Cortex_Left     Fetal_Renal_Cortex_Left tracks from Roadmap
     Fetal_Renal_Cortex     Fetal_Renal_Cortex tracks from Roadmap
     Fetal_Ovary     Fetal_Ovary tracks from Roadmap
     Fetal_Muscle_Upper_Trunk     Fetal_Muscle_Upper_Trunk tracks from Roadmap
     Fetal_Muscle_Upper_Limb_Skeletal     Fetal_Muscle_Upper_Limb_Skeletal tracks from Roadmap
     Fetal_Muscle_Trunk     Fetal_Muscle_Trunk tracks from Roadmap
     Fetal_Muscle_Lower_Limb_Skeletal     Fetal_Muscle_Lower_Limb_Skeletal tracks from Roadmap
     Fetal_Muscle_Leg     Fetal_Muscle_Leg tracks from Roadmap
     Fetal_Muscle_Back     Fetal_Muscle_Back tracks from Roadmap
     Fetal_Muscle_Arm     Fetal_Muscle_Arm tracks from Roadmap
     Fetal_Lung_Right     Fetal_Lung_Right tracks from Roadmap
     Fetal_Lung_Left     Fetal_Lung_Left tracks from Roadmap
     Fetal_Kidney_Right     Fetal_Kidney_Right tracks from Roadmap
     Fetal_Kidney_Left     Fetal_Kidney_Left tracks from Roadmap
     Fetal_Intestine_Small     Fetal_Intestine_Small tracks from Roadmap
     Fetal_Intestine_Large     Fetal_Intestine_Large tracks from Roadmap
     Fetal_Adrenal_Gland     Fetal_Adrenal_Gland tracks from Roadmap
     Fetal Testes     Fetal Testes tracks from Roadmap
     Fetal Spinal Cord     Fetal Spinal Cord tracks from Roadmap
     Fetal Skin     Fetal Skin tracks from Roadmap
     Fetal Placenta     Fetal Placenta tracks from Roadmap
     Fetal Lung     Fetal Lung tracks from Roadmap
     Fetal Kidney     Fetal Kidney tracks from Roadmap
     Fetal Heart     Fetal Heart tracks from Roadmap
     Fetal Brain     Fetal Brain tracks from Roadmap
     Esophagus     Esophagus tracks from Roadmap
     Duodenum Smooth Muscle     Duodenum Smooth Muscle tracks from Roadmap
     Duodenum Mucosa     Duodenum Mucosa tracks from Roadmap
     Colonic Mucosa     Colonic Mucosa tracks from Roadmap
     Colon Smooth Muscle     Colon Smooth Muscle tracks from Roadmap
     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells     Chondrocytes from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells tracks from Roadmap
     CD8_Memory_Primary_Cells     CD8_Memory_Primary_Cells tracks from Roadmap
     CD8 primary cells     CD8 primary cells tracks from Roadmap
     CD8 Naive Primary cells     CD8 Naive Primary cells tracks from Roadmap
     CD56 primary cells     CD56 primary cells tracks from Roadmap
     CD4+_CD25int_CD127+_Tmem_Primary_Cells     CD4+_CD25int_CD127+_Tmem_Primary_Cells tracks from Roadmap
     CD4+_CD25-_Th_Primary_Cells     CD4+_CD25-_Th_Primary_Cells tracks from Roadmap
     CD4+_CD25-_IL17-_PMA-Ionomycin_stimulated_MACS_purified_Th_Primary_Cells     CD4+_CD25-_IL17-_PMA-Ionomycin_stimulated_MACS_purified_Th_Primary_Cells tracks from Roadmap
     CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells     CD4+_CD25-_IL17+_PMA-Ionomcyin_stimulated_Th17_Primary_Cells tracks from Roadmap
     CD4+_CD25-_CD45RO+_Memory_Primary_Cells     CD4+_CD25-_CD45RO+_Memory_Primary_Cells tracks from Roadmap
     CD4+_CD25-_CD45RA+_Naive_Primary_Cells     CD4+_CD25-_CD45RA+_Naive_Primary_Cells tracks from Roadmap
     CD4+_CD25+_CD127-_Treg_Primary_Cells     CD4+_CD25+_CD127-_Treg_Primary_Cells tracks from Roadmap
     CD4 primary cells     CD4 primary cells tracks from Roadmap
     CD4 Naive Primary cells     CD4 Naive Primary cells tracks from Roadmap
     CD4 Memory Primary cells     CD4 Memory Primary cells tracks from Roadmap
     CD34 Primary cells     CD34 Primary cells tracks from Roadmap
     CD34 cultured cells     CD34 cultured cells tracks from Roadmap
     CD3 Primary cells     CD3 Primary cells tracks from Roadmap
     CD20 primary cells     CD20 primary cells tracks from Roadmap
     CD19 Primary cells     CD19 Primary cells tracks from Roadmap
     CD15 Primary cells     CD15 Primary cells tracks from Roadmap
     CD14 primary cells     CD14 primary cells tracks from Roadmap
     Breast_Fibroblast_Primary_Cells     Breast_Fibroblast_Primary_Cells tracks from Roadmap
     Breast vHMEC     Breast vHMEC tracks from Roadmap
     Breast Myoepithelial cells     Breast Myoepithelial cells tracks from Roadmap
     Breast Luminal Epithelial cells     Breast Luminal Epithelial cells tracks from Roadmap
     Brain Substantia Nigra     Brain Substantia Nigra tracks from Roadmap
     Brain Mid Frontal Lobe     Brain Mid Frontal Lobe tracks from Roadmap
     Brain Inferior Temporal Lobe     Brain Inferior Temporal Lobe tracks from Roadmap
     Brain Hippocampus Middle     Brain Hippocampus Middle tracks from Roadmap
     Brain Germinal Matrix     Brain Germinal Matrix tracks from Roadmap
     Brain Cingulate Gyrus     Brain Cingulate Gyrus tracks from Roadmap
     Brain Anterior Caudate     Brain Anterior Caudate tracks from Roadmap
     Brain Angular Gyrus     Brain Angular Gyrus tracks from Roadmap
     Bone Marrow Derived Mesenchymal Stem cell     Bone Marrow Derived Mesenchymal Stem cell tracks from Roadmap
     Bladder     Bladder tracks from Roadmap
     Aorta     Aorta tracks from Roadmap
     Adult Liver     Adult Liver tracks from Roadmap
     Adult Kidney     Adult Kidney tracks from Roadmap
     Adrenal_Gland     Adrenal_Gland tracks from Roadmap
     Adipose_Tissue     Adipose_Tissue tracks from Roadmap
     Adipose Nuclei     Adipose Nuclei tracks from Roadmap
     Adipose Derived Mesenchymal Stem Cell Cultured Cells     Adipose Derived Mesenchymal Stem Cell Cultured Cells tracks from Roadmap
-   Custom Tracks    
bejeranooo User Supplied Track
grinwich User Supplied Track
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
p14 Fix Patches Reference Assembly Fix Patch Sequence Alignments
p14 Alt Haplotypes Reference Assembly Alternate Haplotype Sequence Alignments
Assembly Assembly from Fragments
BAC End Pairs BAC End Pairs
BU ORChID ORChID Predicted DNA Cleavage Sites from ENCODE/Boston Univ (Tullius lab)
Chromosome Band Chromosome Bands Localized by FISH Mapping Clones
deCODE Recomb deCODE Recombination maps, 10Kb bin size, October 2010
ENCODE Pilot Regions Used for ENCODE Pilot Project (1%)
Exome Probesets Exome Capture Probesets and Targeted Region
FISH Clones Clones Placed on Cytogenetic Map Using FISH
Fosmid End Pairs Fosmid End Pairs
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
GRC Map Contigs Genome Reference Consortium Map Contigs
Hg18 Diff Contigs New to GRCh37/(hg19), Not Carried Forward from NCBI Build 36(hg18)
Hg38 Diff Contigs Dropped or Changed from GRCh37(hg19) to GRCh38(hg38)
Hi Seq Depth Regions of Exceptionally High Depth of Aligned Short Reads
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
liftOver & ReMap UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg38
LRG Regions Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Feb. 2009 (GRCh37/hg19) Assembly
Map Contigs Physical Map Contigs
Mappability Mappability or Uniqueness of Reference Genome from ENCODE
Problematic Regions Problematic Regions for NGS or Sanger sequencing or very variable regions
Recomb Rate Recombination Rate from deCODE, Marshfield, or Genethon Maps (deCODE default)
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
STS Markers STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps
-   Genes and Gene Predictions    
updated GENCODE V47lift37 GENCODE V47lift37
NCBI RefSeq RefSeq genes from NCBI
Genes Archive Previous versions of GENCODE/UCSC Genes (knownGene)
     UCSC Genes 2013     Legacy UCSC Genes track (knownGene) from 2013
     GENCODE V45lift37     GENCODE V45lift37
CCDS Consensus CDS
CRISPR Targets CRISPR/Cas9 -NGG Targets, whole genome
Ensembl Genes Ensembl Genes
EvoFold EvoFold Predictions of RNA Secondary Structure
Exoniphy Exoniphy Human/Mouse/Rat/Dog
updated GENCODE Versions Container of all new and previous GENCODE releases
     GENCODE Genes V7     Gene Annotations from ENCODE/GENCODE Version 7
     GENCODE Genes V14     Gene Annotations from ENCODE/GENCODE Version 14
     GENCODE Genes V17     Gene Annotations from ENCODE/GENCODE Version 17
     GENCODE Genes V19     Gene Annotations from GENCODE Version 19
     GENCODE Gene V24lift37     Gene Annotations from GENCODE Version 24lift37
     GENCODE Gene V27lift37     Gene Annotations from GENCODE Version 27lift37
     GENCODE V28lift37     GENCODE lifted annotations from V28lift37 (Ensembl 92)
     GENCODE V31lift37     GENCODE lifted annotations from V31lift37 (Ensembl 97)
     GENCODE V33lift37     GENCODE lifted annotations from V33lift37 (Ensembl 99)
     GENCODE V34lift37     GENCODE lifted annotations from V34lift37 (Ensembl 100)
     GENCODE V35lift37     GENCODE lifted annotations from V35lift37 (Ensembl 101)
     GENCODE V36lift37     GENCODE lifted annotations from V36lift37 (Ensembl 102)
     GENCODE V37lift37     GENCODE lifted annotations from V37lift37 (Ensembl 103)
     GENCODE V38lift37     GENCODE lifted annotations from V38lift37 (Ensembl 104)
     GENCODE V39lift37     GENCODE lifted annotations from V39lift37 (Ensembl 105)
     GENCODE V40lift37     GENCODE lifted annotations from V40lift37 (Ensembl 106)
     GENCODE V41lift37     GENCODE lifted annotations from V41lift37 (Ensembl 107)
     GENCODE V42lift37     GENCODE lifted annotations from V42lift37 (Ensembl 108)
     GENCODE V43lift37     GENCODE lifted annotations from V43lift37 (Ensembl 109)
     GENCODE V44lift37     GENCODE lifted annotations from V44lift37 (Ensembl 110)
     GENCODE V45lift37     GENCODE lifted annotations from V45lift37 (Ensembl 111)
     GENCODE V46lift37     GENCODE lifted annotations from V46lift37 (Ensembl 112)
    new GENCODE V47lift37     GENCODE lifted annotations from V47lift37 (Ensembl 113)
H-Inv 7.0 H-Inv 7.0 Gene Predictions
HGNC HUGO Gene Nomenclature
IKMC Genes Mapped International Knockout Mouse Consortium Genes Mapped to Human Genome
lincRNAs Human Body Map lincRNAs and TUCP Transcripts
     lincRNA Transcripts     lincRNA and TUCP transcripts
     lincRNA RNA-Seq Reads     lincRNA RNA-Seq reads expression abundances
LRG Transcripts Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations
MGC/ORFeome Genes MGC/ORFeome Full ORF mRNA Clones
     ORFeome Clones     ORFeome Collaboration Gene Clones
     MGC Genes     Mammalian Gene Collection Full ORF mRNAs
Old UCSC Genes Previous Version of UCSC Genes
Other RefSeq Non-Human RefSeq Genes
Pfam in UCSC Gene Pfam Domains in UCSC Genes
Prediction Archive Gene Prediction Archive
     SIB Genes     Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs
     SGP Genes     SGP Gene Predictions Using Mouse/Human Homology
     N-SCAN     N-SCAN Gene Predictions
     Genscan Genes     Genscan Gene Predictions
     Geneid Genes     Geneid Gene Predictions
     AUGUSTUS     AUGUSTUS ab initio gene predictions v3.1
     AceView Genes     AceView Gene Models With Alt-Splicing
Retroposed Genes Retroposed Genes V5, Including Pseudogenes
sno/miRNA C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UCSC Alt Events Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
Vega Genes Vega Annotations
Yale Pseudo60 Yale Pseudogenes based on Ensembl Release 60
-   Phenotype and Literature    
OMIM Online Mendelian Inheritance in Man
     OMIM Cyto Loci     OMIM Cytogenetic Loci Phenotypes - Gene Unknown
     OMIM Genes     OMIM Gene Phenotypes - Dark Green Can Be Disease-causing
     OMIM Alleles     OMIM Allelic Variant Phenotypes
Publications Publications: Sequences in Scientific Articles
AbSplice Scores Aberrant Splicing Prediction Scores
CADD 1.6 CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
     CADD 1.6 Ins     CADD 1.6 Score: Insertions - label is length of insertion
     CADD 1.6 Del     CADD 1.6 Score: Deletions - label is length of deletion
     CADD 1.6     CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
new CADD 1.7 CADD 1.7 Score for all single-basepair mutations and selected insertions/deletions
    new CADD 1.7 Ins     CADD 1.7 Score: Insertions - label is length of insertion
    new CADD 1.7 Del     CADD 1.7 Score: Deletions - label is length of deletion
    new CADD 1.7     CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)
new ClinGen ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)
ClinGen CNVs Clinical Genome Resource (ClinGen) CNVs
ClinVar Variants ClinVar Variants
Constraint scores Human constraint scores
     MTR All Data     MTR - Missense Tolerance Ratio Scores all annotations
     MTR Scores     MTR - Missense Tolerance Ratio Scores by base
     MetaDome All Data     MetaDome - Tolerance Landscape score all annotations
     MetaDome     MetaDome - Tolerance Landscape score
     HMC     HMC - Homologous Missense Constraint Score on PFAM domains
     JARVIS     JARVIS: score to prioritize non-coding regions for disease relevance
Coriell CNVs Coriell Cell Line Copy Number Variants
COSMIC Regions Catalogue of Somatic Mutations in Cancer V82
COVID Data Container of SARS-CoV-2 data
     COVID Rare Harmful Var     Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort
     COVID GWAS v3     GWAS meta-analyses from the COVID-19 Host Genetics Initiative
     COVID GWAS v4     COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)
DECIPHER CNVs DECIPHER CNVs (not updated anymore - use the hg38 track)
DECIPHER SNVs DECIPHER SNVs (not updated anymore - use the hg38 track)
Development Delay Copy Number Variation Morbidity Map of Developmental Delay
Dosage Sensitivity pHaplo and pTriplo dosage sensitivity map from Collins et al 2022
GAD View Genetic Association Studies of Complex Diseases and Disorders
GenCC GenCC: The Gene Curation Coalition Annotations
Gene Interactions Protein Interactions from Curated Databases and Text-Mining
GeneReviews GeneReviews
GWAS Catalog NHGRI-EBI Catalog of Published Genome-Wide Association Studies
Haploinsufficiency Haploinsufficiency predictions for genes from DECIPHER
HGMD public Human Gene Mutation Database - Public Version Dec 2023
Lens Patents Lens PatSeq Patent Document Sequences
LOVD Variants LOVD: Leiden Open Variation Database Public Variants
MGI Mouse QTL MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human
Orphanet Orphadata: Aggregated Data From Orphanet
PanelApp Genomics England PanelApp Diagnostics
Polygenic Risk Scores Polygenic Risk Scores
     PRS eMERGE     Polygenic Risk Scores from NHGRI Electronic Medical Records and Genomics (eMERGE) project
Prediction Scores Human Prediction Scores
     BayesDel     BayesDel - deleteriousness meta-score
REVEL Scores REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)
RGD Human QTL Human Quantitative Trait Locus from RGD
RGD Rat QTL Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human
SNPedia SNPedia
new SpliceAI SpliceAI: Splice Variant Prediction Score
     SpliceAI indels (masked)     SpliceAI Indels (masked)
     SpliceAI SNVs (masked)     SpliceAI SNVs (masked)
     SpliceAI indels     SpliceAI Indels (unmasked)
     SpliceAI SNVs     SpliceAI SNVs (unmasked)
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
Variants in Papers Genetic Variants mentioned in scientific publications
     Mastermind Variants     Genomenon Mastermind Variants extracted from full text publications
     Avada Variants     Avada Variants extracted from full text publications
Web Sequences DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research
-   mRNA and EST    
CGAP SAGE CGAP Long SAGE
Gene Bounds Gene Boundaries as Defined by RNA and Spliced EST Clusters
H-Inv H-Invitational Genes mRNA Alignments
Human ESTs Human ESTs Including Unspliced
Human mRNAs Human mRNAs from GenBank
Human RNA Editing Human RNA Editing from the DAtabase of RNa EDiting
Other ESTs Non-Human ESTs from GenBank
Other mRNAs Non-Human mRNAs from GenBank
Poly(A) Poly(A) Sites, Both Reported and Predicted
PolyA-Seq Poly(A)-sequencing from Merck Research Laboratories
SIB Alt-Splicing Alternative Splicing Graph from Swiss Institute of Bioinformatics
Spliced ESTs Human ESTs That Have Been Spliced
UniGene UniGene Alignments
-   Expression    
GTEx Gene V8 Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)
Allen Brain Allen Brain Atlas Probes
Burge RNA-seq Burge Lab RNA-seq Aligned by GEM Mapper
CSHL Small RNA-seq Small RNA-seq from ENCODE/Cold Spring Harbor Lab
ENC Exon Array ENCODE Exon Array
     UW Affy Exon     Affymetrix Exon Array from ENCODE/University of Washington
     Duke Affy Exon     Affymetrix Exon Array from ENCODE/Duke
ENC ProtGeno ENCODE Proteogenomics
     UNC/BSU ProtGeno     Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ.
     UNC/BSU ProtGenc     Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.
ENC RNA-seq ENCODE RNA-seq
     SYDH RNA-seq     RNA-seq from ENCODE/Stanford/Yale/USC/Harvard
     HAIB RNA-seq     RNA-seq from ENCODE/HAIB
     GIS RNA-seq     RNA-seq from ENCODE/Genome Institute of Singapore
     CSHL Long RNA-seq     Long RNA-seq from ENCODE/Cold Spring Harbor Lab
     Caltech RNA-seq     RNA-seq from ENCODE/Caltech
EPDnew Promoters Promoters from EPDnew human version 006
Affy Archive Affymetrix Archive
     Affy U133Plus2     Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0
     Affy U133     Alignments of Affymetrix Consensus/Exemplars from HG-U133
     Affy U95     Alignments of Affymetrix Consensus/Exemplars from HG-U95
     Affy RNA Loc     RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL
     Affy GNF1H     Alignments of Affymetrix Consensus/Exemplars from GNF1H
     Affy Exon Array     Affymetrix Human Exon Array Probes and Probesets
GIS RNA PET RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS
GNF Atlas 2 GNF Expression Atlas 2
GTEx Gene Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)
GTEx Transcript Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors
GWIPS-viz Riboseq Ribosome Profiling from GWIPS-viz
Illumina WG-6 Alignments of Illumina WG-6 3.0 Probe Set
PeptideAtlas Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas
qPCR Primers Human (hg19) Whole Transcriptome qPCR Primers
RIKEN CAGE Loc RNA Subcellular CAGE Localization from ENCODE/RIKEN
Sestan Brain Sestan Lab Human Brain Atlas Microarrays
-   Regulation    
ENCODE Regulation Integrated Regulation from ENCODE
     Txn Fac ChIP V2     Transcription Factor ChIP-seq from ENCODE (V2)
     Txn Factor ChIP     Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs
     Txn Factr ChIP E3     Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3
     DNase Clusters     DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3)
     Layered H3K27Ac     H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE
     Layered H3K4Me3     H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE
     Layered H3K4Me1     H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE
     Transcription     Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE
CD34 DnaseI Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
ENC Chromatin ENCODE Chromatin Interactions
     UW 5C    DownloadsChromatin Interactions by 5C from ENCODE/University of Washington
     UMass 5C     Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.
     GIS ChIA-PET     Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan
ENC DNA Methyl ENCODE DNA Methylation
     HAIB Methyl450     CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB
     HAIB Methyl RRBS     DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha
ENC DNase/FAIRE ENCODE Open Chromatin by DNaseI HS and FAIRE
     UW DNaseI HS     DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
     UW DNaseI DGF     DNaseI Digital Genomic Footprinting from ENCODE/University of Washington
     UNC FAIRE     Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)
     Duke DNaseI HS     Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
     Open Chrom Synth     DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)
     Uniform DNaseI HS     DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis
     Master DNaseI HS     DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis
ENC Histone ENCODE Histone Modification
     UW Histone     Histone Modifications by ChIP-seq from ENCODE/University of Washington
     SYDH Histone     Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
     Broad Histone     Histone Modifications by ChIP-seq from ENCODE/Broad Institute
     Broad ChromHMM     Chromatin State Segmentation by HMM from ENCODE/Broad
ENC RNA Binding ENCODE RNA Binding Proteins
     SUNY RIP-seq     RIP-seq from ENCODE/SUNY Albany
     SUNY RIP Tiling     RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany
     SUNY RIP GeneST     RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany
ENC TF Binding ENCODE Transcription Factor Binding
     Uniform TFBS     Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis
     ENCODE 3 TFBS     Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3
     UW CTCF Binding     CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
     UTA TFBS     Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
     UChicago TFBS     Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago
     SYDH TFBS     Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard
     HAIB TFBS     Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
FANTOM5 FANTOM5: Mapped transcription start sites (TSS) and their usage
     TSS activity (TPM)     FANTOM5: TSS activity per sample (TPM)
     TSS activity - read counts     FANTOM5: TSS activity per sample read counts
     FANTOM CAT     FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends
     Max counts of CAGE reads     FANTOM5: Max counts of CAGE reads
     Total counts of CAGE reads     FANTOM5: Total counts of CAGE reads
     TSS peaks     FANTOM5: DPI peak, robust set
     Enhancer - promoter correlations distances organ     FANTOM5: Enhancer - promoter correlations distances organ
     Enhancer - promoter correlations distances cell type     FANTOM5: Enhancer - promoter correlations distances cell type
     FANTOM-NET Enhancers     FANTOM5: FANTOM-NET Enhancers
     Enhancers     FANTOM5: Enhancers
FSU Repli-chip Replication Timing by Repli-chip from ENCODE/FSU
GeneHancer GeneHancer Regulatory Elements and Gene Interactions
Genome Segments Genome Segmentations from ENCODE
GTEx Combined eQTL Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6)
GTEx Tissue eQTL Expression QTLs in 44 tissues from GTEx (midpoint release, V6)
JASPAR Transcription Factors JASPAR Transcription Factor Binding Site Database
NKI Nuc Lamina NKI Nuclear Lamina Associated Domains (LaminB1 DamID)
     NKI LADs (Tig3)     NKI LADs (Lamina Associated Domains, Tig3 cells)
     LaminB1 (Tig3)     NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells)
ORegAnno Regulatory elements from ORegAnno
Rao 2014 Hi-C Hi-C on 7 cell lines from Rao 2014
ReMap ChIP-seq ReMap Atlas of Regulatory Regions
Stanf Nucleosome Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU
SUNY SwitchGear RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany
SwitchGear TSS SwitchGear Genomics Transcription Start Sites
TFBS Conserved HMR Conserved Transcription Factor Binding Sites
TS miRNA Targets TargetScan predicted microRNA target sites
     TS miRNA v7.2     Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018)
     TS miRNA sites     TargetScan miRNA Regulatory Sites (Release 5.1, April 2009)
UCSF Brain Methyl UCSF Brain DNA Methylation
UMMS Brain Hist Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)
UW Repli-seq Replication Timing by Repli-seq from ENCODE/University of Washington
VISTA Enhancers VISTA Enhancers
-   Comparative Genomics    
Conservation Vertebrate Multiz Alignment & Conservation (100 Species)
Cons 46-Way Vertebrate Multiz Alignment & Conservation (46 Species)
Cons Indels MmCf Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2
Evo Cpg Weizmann Evolutionary CpG Islands
GERP GERP Scores for Mammalian Alignments
phastBias gBGC phastBias gBGC predictions
Primate Chain/Net Primate Genomes, Chain and Net Alignments
Placental Chain/Net Non-primate Placental Mammal Genomes, Chain and Net Alignments
Vertebrate Chain/Net Non-placental Vertebrate Genomes, Chain and Net Alignments
CHM13 alignments CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments
+   Neandertal Assembly and Analysis    
+   Denisova Assembly and Analysis    
-   Variation    
dbSNP 155 Short Genetic Variants from dbSNP release 155
1000G Archive 1000 Genomes Archive
     1000G Ph3 Vars     1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs
     1000G Ph3 Accsbl     1000 Genomes Project Phase 3 Paired-end Accessible Regions
     1000G Ph1 Vars     1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs
     1000G Ph1 Accsbl     1000 Genomes Project Phase 1 Paired-end Accessible Regions
Array Probesets Microarray Probesets
dbSNP Archive dbSNP Track Archive
     Mult. SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci
     Flagged SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc
     Common SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples
     All SNPs(138)     Simple Nucleotide Polymorphisms (dbSNP 138)
     Flagged SNPs(141)     Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc
     Common SNPs(141)     Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples
     All SNPs(141)     Simple Nucleotide Polymorphisms (dbSNP 141)
     Mult. SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci
     Flagged SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc
     Common SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples
     All SNPs(142)     Simple Nucleotide Polymorphisms (dbSNP 142)
     Mult. SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci
     Flagged SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc
     Common SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples
     All SNPs(144)     Simple Nucleotide Polymorphisms (dbSNP 144)
     Mult. SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci
     Flagged SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc
     Common SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples
     All SNPs(146)     Simple Nucleotide Polymorphisms (dbSNP 146)
     Mult. SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci
     Flagged SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc
     Common SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples
     All SNPs(147)     Simple Nucleotide Polymorphisms (dbSNP 147)
     Mult. SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci
     Flagged SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc
     Common SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples
     All SNPs(150)     Simple Nucleotide Polymorphisms (dbSNP 150)
     Mult. SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci
     Flagged SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc
     All SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151)
     Common SNPs(151)     Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples
     dbSNP 153     Short Genetic Variants from dbSNP release 153
dbVar Common Struct Var NCBI Curated Common Structural Variants from dbVar
     dbVar Conflict SV     NCBI dbVar Curated Conflict Variants
     dbVar Common SV     NCBI dbVar Curated Common Structural Variants
DGV Struct Var Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)
EVS Variants NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes
ExAC Exome Aggregation Consortium (ExAC) Variants and Calling Regions
Genome In a Bottle Genome In a Bottle Structural Variants and Trios
Genome Variants Personal Genome Variants
GIS DNA PET ENCODE Genome Institute of Singapore DNA Paired-End Ditags
gnomAD Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint
     gnomAD Structural Variants     Genome Aggregation Database (gnomAD) - Structural Variants
     gnomAD pext     gnomAD Proportion Expression Across Transcript Scores (pext)
     gnomAD Genomes Variants     Genome Aggregation Database (gnomAD) Genome Variants v2.1.1
     gnomAD Exomes Variants     Genome Aggregation Database (gnomAD) Exome Variants v2.1.1
     gnomAD Coverage     Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage
     gnomAD Constraint Metrics     Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores)
HAIB Genotype Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha
HapMap SNPs HapMap SNPs (rel27, merged Phase II + Phase III genotypes)
HGDP Allele Freq Human Genome Diversity Project SNP Population Allele Frequencies
Platinum Genomes Platinum genome variants
-   Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
NumtS Sequence Human NumtS mitochondrial sequence
Segmental Dups Duplications of >1000 Bases of Non-RepeatMasked Sequence
Self Alignment Human Chained Self Alignments
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust