Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
RefSeq Acc |
| RefSeq Accession |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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NCBI RefSeq |
| RefSeq genes from NCBI |
WS245 Genes |
| Gene predictions from WormBase WS245 release |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
CRISPR |
| CRISPR/Cas9 Sp. Pyog. target sites |
CRISPR Targets |
| CRISPR/Cas9 -NGG Targets |
CRISPR Regions |
| Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 200 bp) |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Other RefSeq |
| Non-C. elegans RefSeq Genes |
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Spliced ESTs |
| C. elegans ESTs That Have Been Spliced |
C. elegans ESTs |
| C. elegans ESTs Including Unspliced |
C. elegans mRNAs |
| C. elegans mRNAs from GenBank |
Other mRNAs |
| Non-C. elegans mRNAs from GenBank |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
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Conservation |
| Nematode Multiz Alignment & Conservation (26 Species) |
Cons 135 species |
| Multiz Alignment & Conservation (135 species: 112 nematodes, 22 flatworms and Ciona intestinalis) |
Nematodes Chain/Net |
| Nematodes Chain and Net Alignments |
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Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
RepeatMasker |
| Repeating Elements by RepeatMasker |
Self Chain |
| C. elegans Chained Self Alignments |
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