|
|
|
|
|
---|
Base Position
| Nanopore coverage
| ARTIC Primers V3
| ARTIC Primers V4
| ARTIC Primers V4.1
| RAPID/Midnight Primers
| Swift Primers
| Crowd-Sourced Data
|
NEB VarSkip Primers
| Cas13 CRISPR
| Addgene Plasmids
| Assembly
| CRISPR Detection
| Gap
| GC Percent
| INSDC
|
Problematic Sites
| RefSeq Acc
| Restr Enzymes
| RT-PCR Primers
| Short Match
|
|
---|
NCBI Genes
| NCBI Proteins
| Subgenomic Canonical
| Subgenomic Breakpts
| Subgenomic Observed
| Subgenomic RNA Modif.
| Protein Interact.
| Weizman ORFs
|
PDB Structures
| PDB Ligand Contacts
| AUGUSTUS
| Genscan Genes
| Nextstrain Genes
| PhyloCSF Genes
|
|
---|
Precurs. Proteins
| Protein Alignments
| Protein Products
| Highlights
| Signal Peptides
| Extracellular
| Transmem. Domains
| Cytoplasmic
|
Disulf. Bonds
| Protein Domains
| Glycosyl/Phosph.
| Mutations
| Other Annot.
| Structure
| Repeats
| Protease Cleavage
|
|
---|
RBD Mut Bind
| RBD Mut Expr
| Antib Pept Array
| S Antib Pept Array
| Antibody Escape
| CD8 Escape Muts
| CD8 RosettaMHC
| IEDB Predictions
|
Poran HLA I
| Poran HLA II
| T-React. Epitopes
| Vaccines
| Validated epitopes from IEDB
|
|
---|
SHAPE Struct Pyle
| icSHAPE RNA Struct
| Rangan RNA
| Rfam
|
|
---|
CpG Islands
|
|
---|
44 Bat CoVs
| 119 Vertebrate CoVs
| PhyloCSF
| Human CoV
|
|
---|
Phylogeny: Public
| Phylogeny: GISAID
| updated
Nextstrain Clades
| updated
Nextstrain Mutations
| Intrahost SNPs
| Nat. Selection (Pond)
| Drug Resistance Mutations
| Galaxy ENA mutations
|
Microdeletions
| updated
Nextstrain Frequency
| updated
Nextstrain Parsimony
| Pot. pathogenic indels
| Predicted Resistance
| Recomb. Breakpoints
| Simple Repeats
| Spike Mutations
|
new
Variants of Concern
| WM + SDust
|