Control track and group visibility more selectively below.
|
|
|---|
| ChIP-seq |
| Roadmap ChIP-seq |
| H4K91ac |
| Roadmap H4K91ac |
| H4K8ac |
| Roadmap H4K8ac |
| H4K5ac |
| Roadmap H4K5ac |
| H4K20me1 |
| Roadmap H4K20me1 |
| H4K12ac |
| Roadmap H4K12ac |
| H3T11ph |
| Roadmap H3T11ph |
| H3K9me3 |
| Roadmap H3K9me3 |
| H3K9me1 |
| Roadmap H3K9me1 |
| H3K9ac |
| Roadmap H3K9ac |
| H3K79me2 |
| Roadmap H3K79me2 |
| H3K79me1 |
| Roadmap H3K79me1 |
| H3K56ac |
| Roadmap H3K56ac |
| H3K4me3 |
| Roadmap H3K4me3 |
| H3K4me2 |
| Roadmap H3K4me2 |
| H3K4me1 |
| Roadmap H3K4me1 |
| H3K4ac |
| Roadmap H3K4ac |
| H3K36me3 |
| Roadmap H3K36me3 |
| H3K27me3 |
| Roadmap H3K27me3 |
| H3K27ac |
| Roadmap H3K27ac |
| H3K23me2 |
| Roadmap H3K23me2 |
| H3K23ac |
| Roadmap H3K23ac |
| H3K18ac |
| Roadmap H3K18ac |
| H3K14ac |
| Roadmap H3K14ac |
| H2BK5ac |
| Roadmap H2BK5ac |
| H2BK20ac |
| Roadmap H2BK20ac |
| H2BK15ac |
| Roadmap H2BK15ac |
| H2BK12ac |
| Roadmap H2BK12ac |
| H2BK120ac |
| Roadmap H2BK120ac |
| H2AK9ac |
| Roadmap H2AK9ac |
| H2AK5ac |
| Roadmap H2AK5ac |
| H2AFZ |
| Roadmap H2AFZ |
| DNase |
| DNase Hypersensitivity Raw Signal |
| microRNA-seq |
| Roadmap microRNA-seq |
| polyA plus RNA-seq |
| Roadmap polyA plus RNA-seq |
| small RNA-seq |
| Roadmap small RNA-seq |
| total RNA-seq |
| Roadmap total RNA-seq |
| WGBS |
| Roadmap WGBS |
| By Assay |
| Roadmap data by assay |
| WGBS |
| WGBS tracks |
| total_RNA-seq |
| total_RNA-seq tracks |
| small_RNA-seq |
| small_RNA-seq tracks |
| polyA_plus_RNA-seq |
| polyA_plus_RNA-seq tracks |
| microRNA-seq |
| microRNA-seq tracks |
| H4K91ac |
| H4K91ac tracks |
| H4K8ac |
| H4K8ac tracks |
| H4K5ac |
| H4K5ac tracks |
| H4K20me1 |
| H4K20me1 tracks |
| H4K12ac |
| H4K12ac tracks |
| H3T11ph |
| H3T11ph tracks |
| H3K9me3 |
| H3K9me3 tracks |
| H3K9me1 |
| H3K9me1 tracks |
| H3K9ac |
| H3K9ac tracks |
| H3K79me2 |
| H3K79me2 tracks |
| H3K79me1 |
| H3K79me1 tracks |
| H3K56ac |
| H3K56ac tracks |
| H3K4me3 |
| H3K4me3 tracks |
| H3K4me2 |
| H3K4me2 tracks |
| H3K4me1 |
| H3K4me1 tracks |
| H3K4ac |
| H3K4ac tracks |
| H3K36me3 |
| H3K36me3 tracks |
| H3K27me3 |
| H3K27me3 tracks |
| H3K27ac |
| H3K27ac tracks |
| H3K23me2 |
| H3K23me2 tracks |
| H3K23ac |
| H3K23ac tracks |
| H3K18ac |
| H3K18ac tracks |
| H3K14ac |
| H3K14ac tracks |
| H2BK5ac |
| H2BK5ac tracks |
| H2BK20ac |
| H2BK20ac tracks |
| H2BK15ac |
| H2BK15ac tracks |
| H2BK12ac |
| H2BK12ac tracks |
| H2BK120ac |
| H2BK120ac tracks |
| H2AK9ac |
| H2AK9ac tracks |
| H2AK5ac |
| H2AK5ac tracks |
| H2AFZ |
| H2AFZ tracks |
| DNase-seq |
| DNase-seq tracks |
| By Sample |
| Roadmap data by sample |
| urinary_bladder |
| urinary_bladder tracks |
| UCSF-4 |
| UCSF-4 tracks |
| trophoblast_cell |
| trophoblast_cell tracks |
| trophoblast |
| trophoblast tracks |
| thymus |
| thymus tracks |
| testis |
| testis tracks |
| temporal_lobe |
| temporal_lobe tracks |
| T-helper_17_cell |
| T-helper_17_cell tracks |
| T-cell |
| T-cell tracks |
| substantia_nigra |
| substantia_nigra tracks |
| subcutaneous_abdominal_adipose_tissue |
| subcutaneous_abdominal_adipose_tissue tracks |
| stomach_smooth_muscle |
| stomach_smooth_muscle tracks |
| stomach |
| stomach tracks |
| spleen |
| spleen tracks |
| spinal_cord |
| spinal_cord tracks |
| small_intestine |
| small_intestine tracks |
| skin_of_body |
| skin_of_body tracks |
| skeletal_muscle_tissue |
| skeletal_muscle_tissue tracks |
| skeletal_muscle_satellite_cell |
| skeletal_muscle_satellite_cell tracks |
| sigmoid_colon |
| sigmoid_colon tracks |
| right_renal_pelvis |
| right_renal_pelvis tracks |
| right_renal_cortex_interstitium |
| right_renal_cortex_interstitium tracks |
| right_lung |
| right_lung tracks |
| right_kidney |
| right_kidney tracks |
| right_cardiac_atrium |
| right_cardiac_atrium tracks |
| renal_pelvis |
| renal_pelvis tracks |
| renal_cortex_interstitium |
| renal_cortex_interstitium tracks |
| regulatory_T_cell |
| regulatory_T_cell tracks |
| rectal_smooth_muscle_tissue |
| rectal_smooth_muscle_tissue tracks |
| psoas_muscle |
| psoas_muscle tracks |
| placental_basal_plate |
| placental_basal_plate tracks |
| placenta |
| placenta tracks |
| peripheral_blood_mononuclear_cell |
| peripheral_blood_mononuclear_cell tracks |
| pancreas |
| pancreas tracks |
| ovary |
| ovary tracks |
| neutrophil |
| neutrophil tracks |
| neurosphere |
| neurosphere tracks |
| neuronal_stem_cell |
| neuronal_stem_cell tracks |
| neuron |
| neuron tracks |
| natural_killer_cell |
| natural_killer_cell tracks |
| naive_thymus-derived_CD4-positive,_alpha-beta_T_cell |
| naive_thymus-derived_CD4-positive,_alpha-beta_T_cell tracks |
| myoepithelial_cell_of_mammary_gland |
| myoepithelial_cell_of_mammary_gland tracks |
| muscle_of_trunk |
| muscle_of_trunk tracks |
| muscle_of_leg |
| muscle_of_leg tracks |
| muscle_of_back |
| muscle_of_back tracks |
| muscle_of_arm |
| muscle_of_arm tracks |
| muscle_layer_of_duodenum |
| muscle_layer_of_duodenum tracks |
| muscle_layer_of_colon |
| muscle_layer_of_colon tracks |
| mucosa_of_stomach |
| mucosa_of_stomach tracks |
| mucosa_of_rectum |
| mucosa_of_rectum tracks |
| mole |
| mole tracks |
| middle_frontal_area_46 |
| middle_frontal_area_46 tracks |
| mesodermal_cell |
| mesodermal_cell tracks |
| mesendoderm |
| mesendoderm tracks |
| mesenchymal_stem_cell |
| mesenchymal_stem_cell tracks |
| mammary_stem_cell |
| mammary_stem_cell tracks |
| mammary_epithelial_cell |
| mammary_epithelial_cell tracks |
| lung |
| lung tracks |
| luminal_epithelial_cell_of_mammary_gland |
| luminal_epithelial_cell_of_mammary_gland tracks |
| liver |
| liver tracks |
| left_renal_pelvis |
| left_renal_pelvis tracks |
| left_renal_cortex_interstitium |
| left_renal_cortex_interstitium tracks |
| left_lung |
| left_lung tracks |
| left_kidney |
| left_kidney tracks |
| layer_of_hippocampus |
| layer_of_hippocampus tracks |
| large_intestine |
| large_intestine tracks |
| kidney |
| kidney tracks |
| iPS_DF_6.9 |
| iPS_DF_6.9 tracks |
| iPS_DF_4.7 |
| iPS_DF_4.7 tracks |
| iPS_DF_19.7 |
| iPS_DF_19.7 tracks |
| iPS_DF_19.11 |
| iPS_DF_19.11 tracks |
| iPS-20b |
| iPS-20b tracks |
| iPS-18c |
| iPS-18c tracks |
| iPS-18a |
| iPS-18a tracks |
| iPS-15b |
| iPS-15b tracks |
| iPS-11a |
| iPS-11a tracks |
| insula |
| insula tracks |
| IMR-90 |
| IMR-90 tracks |
| HUES64 |
| HUES64 tracks |
| HUES6 |
| HUES6 tracks |
| HUES48 |
| HUES48 tracks |
| hindlimb_muscle |
| hindlimb_muscle tracks |
| hematopoietic_multipotent_progenitor_cell |
| hematopoietic_multipotent_progenitor_cell tracks |
| heart_right_ventricle |
| heart_right_ventricle tracks |
| heart_left_ventricle |
| heart_left_ventricle tracks |
| heart |
| heart tracks |
| H9 |
| H9 tracks |
| H7 |
| H7 tracks |
| H1 |
| H1 tracks |
| germinal_matrix |
| germinal_matrix tracks |
| foreskin_melanocyte |
| foreskin_melanocyte tracks |
| foreskin_keratinocyte |
| foreskin_keratinocyte tracks |
| foreskin_fibroblast |
| foreskin_fibroblast tracks |
| forelimb_muscle |
| forelimb_muscle tracks |
| fibroblast_of_upper_back_skin |
| fibroblast_of_upper_back_skin tracks |
| fibroblast_of_skin_of_scalp |
| fibroblast_of_skin_of_scalp tracks |
| fibroblast_of_skin_of_right_quadriceps |
| fibroblast_of_skin_of_right_quadriceps tracks |
| fibroblast_of_skin_of_right_biceps |
| fibroblast_of_skin_of_right_biceps tracks |
| fibroblast_of_skin_of_left_quadriceps |
| fibroblast_of_skin_of_left_quadriceps tracks |
| fibroblast_of_skin_of_left_biceps |
| fibroblast_of_skin_of_left_biceps tracks |
| fibroblast_of_skin_of_back |
| fibroblast_of_skin_of_back tracks |
| fibroblast_of_skin_of_abdomen |
| fibroblast_of_skin_of_abdomen tracks |
| fibroblast_of_breast |
| fibroblast_of_breast tracks |
| esophagus |
| esophagus tracks |
| ES-I3 |
| ES-I3 tracks |
| endodermal_cell |
| endodermal_cell tracks |
| endocrine_pancreas |
| endocrine_pancreas tracks |
| effector_memory_CD4-positive,_alpha-beta_T_cell |
| effector_memory_CD4-positive,_alpha-beta_T_cell tracks |
| ectodermal_cell |
| ectodermal_cell tracks |
| duodenal_mucosa |
| duodenal_mucosa tracks |
| common_myeloid_progenitor,_CD34-positive |
| common_myeloid_progenitor,_CD34-positive tracks |
| colonic_mucosa |
| colonic_mucosa tracks |
| cingulate_gyrus |
| cingulate_gyrus tracks |
| chorionic_villus |
| chorionic_villus tracks |
| chorion |
| chorion tracks |
| cerebellum |
| cerebellum tracks |
| CD8-positive,_alpha-beta_T_cell |
| CD8-positive,_alpha-beta_T_cell tracks |
| CD8-positive,_alpha-beta_memory_T_cell |
| CD8-positive,_alpha-beta_memory_T_cell tracks |
| CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell |
| CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell tracks |
| CD4-positive,_alpha-beta_T_cell |
| CD4-positive,_alpha-beta_T_cell tracks |
| CD4-positive,_alpha-beta_memory_T_cell |
| CD4-positive,_alpha-beta_memory_T_cell tracks |
| CD14-positive_monocyte |
| CD14-positive_monocyte tracks |
| caudate_nucleus |
| caudate_nucleus tracks |
| brain |
| brain tracks |
| B_cell |
| B_cell tracks |
| astrocyte |
| astrocyte tracks |
| area_11_of_Brodmann |
| area_11_of_Brodmann tracks |
| aorta |
| aorta tracks |
| angular_gyrus |
| angular_gyrus tracks |
| amnion |
| amnion tracks |
| adrenal_gland |
| adrenal_gland tracks |
| adipose_tissue |
| adipose_tissue tracks |
| adipocyte |
| adipocyte tracks |
| Assay Summary |
| Assay Summary |
| WGBS Summary |
| Roadmap Epigenome WGBS Summary |
| total_RNA-seq Summary |
| Roadmap Epigenome total_RNA-seq Summary |
| small_RNA-seq Summary |
| Roadmap Epigenome small_RNA-seq Summary |
| polyA_plus_RNA-seq Summary |
| Roadmap Epigenome polyA_plus_RNA-seq Summary |
| microRNA-seq Summary |
| Roadmap Epigenome microRNA-seq Summary |
| H4K91ac Summary |
| Roadmap Epigenome H4K91ac Summary |
| H4K8ac Summary |
| Roadmap Epigenome H4K8ac Summary |
| H4K5ac Summary |
| Roadmap Epigenome H4K5ac Summary |
| H4K20me1 Summary |
| Roadmap Epigenome H4K20me1 Summary |
| H4K12ac Summary |
| Roadmap Epigenome H4K12ac Summary |
| H3T11ph Summary |
| Roadmap Epigenome H3T11ph Summary |
| H3K9me3 Summary |
| Roadmap Epigenome H3K9me3 Summary |
| H3K9me1 Summary |
| Roadmap Epigenome H3K9me1 Summary |
| H3K9ac Summary |
| Roadmap Epigenome H3K9ac Summary |
| H3K79me2 Summary |
| Roadmap Epigenome H3K79me2 Summary |
| H3K79me1 Summary |
| Roadmap Epigenome H3K79me1 Summary |
| H3K56ac Summary |
| Roadmap Epigenome H3K56ac Summary |
| H3K4me3 Summary |
| Roadmap Epigenome H3K4me3 Summary |
| H3K4me2 Summary |
| Roadmap Epigenome H3K4me2 Summary |
| H3K4me1 Summary |
| Roadmap Epigenome H3K4me1 Summary |
| H3K4ac Summary |
| Roadmap Epigenome H3K4ac Summary |
| H3K36me3 Summary |
| Roadmap Epigenome H3K36me3 Summary |
| H3K27me3 Summary |
| Roadmap Epigenome H3K27me3 Summary |
| H3K27ac Summary |
| Roadmap Epigenome H3K27ac Summary |
| H3K23me2 Summary |
| Roadmap Epigenome H3K23me2 Summary |
| H3K23ac Summary |
| Roadmap Epigenome H3K23ac Summary |
| H3K18ac Summary |
| Roadmap Epigenome H3K18ac Summary |
| H3K14ac Summary |
| Roadmap Epigenome H3K14ac Summary |
| H2BK5ac Summary |
| Roadmap Epigenome H2BK5ac Summary |
| H2BK20ac Summary |
| Roadmap Epigenome H2BK20ac Summary |
| H2BK15ac Summary |
| Roadmap Epigenome H2BK15ac Summary |
| H2BK12ac Summary |
| Roadmap Epigenome H2BK12ac Summary |
| H2BK120ac Summary |
| Roadmap Epigenome H2BK120ac Summary |
| H2AK9ac Summary |
| Roadmap Epigenome H2AK9ac Summary |
| H2AK5ac Summary |
| Roadmap Epigenome H2AK5ac Summary |
| H2AFZ Summary |
| Roadmap Epigenome H2AFZ Summary |
| DNase-seq Summary |
| Roadmap Epigenome DNase-seq Summary |
| Sample Summary |
| Sample Summary |
| urinary_bladder Summary |
| Roadmap Epigenome urinary_bladder Summary |
| UCSF-4 Summary |
| Roadmap Epigenome UCSF-4 Summary |
| trophoblast_cell Summary |
| Roadmap Epigenome trophoblast_cell Summary |
| trophoblast Summary |
| Roadmap Epigenome trophoblast Summary |
| thymus Summary |
| Roadmap Epigenome thymus Summary |
| testis Summary |
| Roadmap Epigenome testis Summary |
| temporal_lobe Summary |
| Roadmap Epigenome temporal_lobe Summary |
| T-helper_17_cell Summary |
| Roadmap Epigenome T-helper_17_cell Summary |
| T-cell Summary |
| Roadmap Epigenome T-cell Summary |
| substantia_nigra Summary |
| Roadmap Epigenome substantia_nigra Summary |
| subcutaneous_abdominal_adipose_tissue Summary |
| Roadmap Epigenome subcutaneous_abdominal_adipose_tissue Summary |
| stomach_smooth_muscle Summary |
| Roadmap Epigenome stomach_smooth_muscle Summary |
| stomach Summary |
| Roadmap Epigenome stomach Summary |
| spleen Summary |
| Roadmap Epigenome spleen Summary |
| spinal_cord Summary |
| Roadmap Epigenome spinal_cord Summary |
| small_intestine Summary |
| Roadmap Epigenome small_intestine Summary |
| skin_of_body Summary |
| Roadmap Epigenome skin_of_body Summary |
| skeletal_muscle_tissue Summary |
| Roadmap Epigenome skeletal_muscle_tissue Summary |
| skeletal_muscle_satellite_cell Summary |
| Roadmap Epigenome skeletal_muscle_satellite_cell Summary |
| sigmoid_colon Summary |
| Roadmap Epigenome sigmoid_colon Summary |
| right_renal_pelvis Summary |
| Roadmap Epigenome right_renal_pelvis Summary |
| right_renal_cortex_interstitium Summary |
| Roadmap Epigenome right_renal_cortex_interstitium Summary |
| right_lung Summary |
| Roadmap Epigenome right_lung Summary |
| right_kidney Summary |
| Roadmap Epigenome right_kidney Summary |
| right_cardiac_atrium Summary |
| Roadmap Epigenome right_cardiac_atrium Summary |
| renal_pelvis Summary |
| Roadmap Epigenome renal_pelvis Summary |
| renal_cortex_interstitium Summary |
| Roadmap Epigenome renal_cortex_interstitium Summary |
| regulatory_T_cell Summary |
| Roadmap Epigenome regulatory_T_cell Summary |
| rectal_smooth_muscle_tissue Summary |
| Roadmap Epigenome rectal_smooth_muscle_tissue Summary |
| psoas_muscle Summary |
| Roadmap Epigenome psoas_muscle Summary |
| placental_basal_plate Summary |
| Roadmap Epigenome placental_basal_plate Summary |
| placenta Summary |
| Roadmap Epigenome placenta Summary |
| peripheral_blood_mononuclear_cell Summary |
| Roadmap Epigenome peripheral_blood_mononuclear_cell Summary |
| pancreas Summary |
| Roadmap Epigenome pancreas Summary |
| ovary Summary |
| Roadmap Epigenome ovary Summary |
| neutrophil Summary |
| Roadmap Epigenome neutrophil Summary |
| neurosphere Summary |
| Roadmap Epigenome neurosphere Summary |
| neuronal_stem_cell Summary |
| Roadmap Epigenome neuronal_stem_cell Summary |
| neuron Summary |
| Roadmap Epigenome neuron Summary |
| natural_killer_cell Summary |
| Roadmap Epigenome natural_killer_cell Summary |
| naive_thymus-derived_CD4-positive,_alpha-beta_T_cell Summary |
| Roadmap Epigenome naive_thymus-derived_CD4-positive,_alpha-beta_T_cell Summary |
| myoepithelial_cell_of_mammary_gland Summary |
| Roadmap Epigenome myoepithelial_cell_of_mammary_gland Summary |
| muscle_of_trunk Summary |
| Roadmap Epigenome muscle_of_trunk Summary |
| muscle_of_leg Summary |
| Roadmap Epigenome muscle_of_leg Summary |
| muscle_of_back Summary |
| Roadmap Epigenome muscle_of_back Summary |
| muscle_of_arm Summary |
| Roadmap Epigenome muscle_of_arm Summary |
| muscle_layer_of_duodenum Summary |
| Roadmap Epigenome muscle_layer_of_duodenum Summary |
| muscle_layer_of_colon Summary |
| Roadmap Epigenome muscle_layer_of_colon Summary |
| mucosa_of_stomach Summary |
| Roadmap Epigenome mucosa_of_stomach Summary |
| mucosa_of_rectum Summary |
| Roadmap Epigenome mucosa_of_rectum Summary |
| mole Summary |
| Roadmap Epigenome mole Summary |
| middle_frontal_area_46 Summary |
| Roadmap Epigenome middle_frontal_area_46 Summary |
| mesodermal_cell Summary |
| Roadmap Epigenome mesodermal_cell Summary |
| mesendoderm Summary |
| Roadmap Epigenome mesendoderm Summary |
| mesenchymal_stem_cell Summary |
| Roadmap Epigenome mesenchymal_stem_cell Summary |
| mammary_stem_cell Summary |
| Roadmap Epigenome mammary_stem_cell Summary |
| mammary_epithelial_cell Summary |
| Roadmap Epigenome mammary_epithelial_cell Summary |
| lung Summary |
| Roadmap Epigenome lung Summary |
| luminal_epithelial_cell_of_mammary_gland Summary |
| Roadmap Epigenome luminal_epithelial_cell_of_mammary_gland Summary |
| liver Summary |
| Roadmap Epigenome liver Summary |
| left_renal_pelvis Summary |
| Roadmap Epigenome left_renal_pelvis Summary |
| left_renal_cortex_interstitium Summary |
| Roadmap Epigenome left_renal_cortex_interstitium Summary |
| left_lung Summary |
| Roadmap Epigenome left_lung Summary |
| left_kidney Summary |
| Roadmap Epigenome left_kidney Summary |
| layer_of_hippocampus Summary |
| Roadmap Epigenome layer_of_hippocampus Summary |
| large_intestine Summary |
| Roadmap Epigenome large_intestine Summary |
| kidney Summary |
| Roadmap Epigenome kidney Summary |
| iPS_DF_6.9 Summary |
| Roadmap Epigenome iPS_DF_6.9 Summary |
| iPS_DF_4.7 Summary |
| Roadmap Epigenome iPS_DF_4.7 Summary |
| iPS_DF_19.7 Summary |
| Roadmap Epigenome iPS_DF_19.7 Summary |
| iPS_DF_19.11 Summary |
| Roadmap Epigenome iPS_DF_19.11 Summary |
| iPS-20b Summary |
| Roadmap Epigenome iPS-20b Summary |
| iPS-18c Summary |
| Roadmap Epigenome iPS-18c Summary |
| iPS-18a Summary |
| Roadmap Epigenome iPS-18a Summary |
| iPS-15b Summary |
| Roadmap Epigenome iPS-15b Summary |
| iPS-11a Summary |
| Roadmap Epigenome iPS-11a Summary |
| insula Summary |
| Roadmap Epigenome insula Summary |
| IMR-90 Summary |
| Roadmap Epigenome IMR-90 Summary |
| HUES64 Summary |
| Roadmap Epigenome HUES64 Summary |
| HUES6 Summary |
| Roadmap Epigenome HUES6 Summary |
| HUES48 Summary |
| Roadmap Epigenome HUES48 Summary |
| hindlimb_muscle Summary |
| Roadmap Epigenome hindlimb_muscle Summary |
| hematopoietic_multipotent_progenitor_cell Summary |
| Roadmap Epigenome hematopoietic_multipotent_progenitor_cell Summary |
| heart_right_ventricle Summary |
| Roadmap Epigenome heart_right_ventricle Summary |
| heart_left_ventricle Summary |
| Roadmap Epigenome heart_left_ventricle Summary |
| heart Summary |
| Roadmap Epigenome heart Summary |
| H9 Summary |
| Roadmap Epigenome H9 Summary |
| H7 Summary |
| Roadmap Epigenome H7 Summary |
| H1 Summary |
| Roadmap Epigenome H1 Summary |
| germinal_matrix Summary |
| Roadmap Epigenome germinal_matrix Summary |
| foreskin_melanocyte Summary |
| Roadmap Epigenome foreskin_melanocyte Summary |
| foreskin_keratinocyte Summary |
| Roadmap Epigenome foreskin_keratinocyte Summary |
| foreskin_fibroblast Summary |
| Roadmap Epigenome foreskin_fibroblast Summary |
| forelimb_muscle Summary |
| Roadmap Epigenome forelimb_muscle Summary |
| fibroblast_of_upper_back_skin Summary |
| Roadmap Epigenome fibroblast_of_upper_back_skin Summary |
| fibroblast_of_skin_of_scalp Summary |
| Roadmap Epigenome fibroblast_of_skin_of_scalp Summary |
| fibroblast_of_skin_of_right_quadriceps Summary |
| Roadmap Epigenome fibroblast_of_skin_of_right_quadriceps Summary |
| fibroblast_of_skin_of_right_biceps Summary |
| Roadmap Epigenome fibroblast_of_skin_of_right_biceps Summary |
| fibroblast_of_skin_of_left_quadriceps Summary |
| Roadmap Epigenome fibroblast_of_skin_of_left_quadriceps Summary |
| fibroblast_of_skin_of_left_biceps Summary |
| Roadmap Epigenome fibroblast_of_skin_of_left_biceps Summary |
| fibroblast_of_skin_of_back Summary |
| Roadmap Epigenome fibroblast_of_skin_of_back Summary |
| fibroblast_of_skin_of_abdomen Summary |
| Roadmap Epigenome fibroblast_of_skin_of_abdomen Summary |
| fibroblast_of_breast Summary |
| Roadmap Epigenome fibroblast_of_breast Summary |
| esophagus Summary |
| Roadmap Epigenome esophagus Summary |
| ES-I3 Summary |
| Roadmap Epigenome ES-I3 Summary |
| endodermal_cell Summary |
| Roadmap Epigenome endodermal_cell Summary |
| endocrine_pancreas Summary |
| Roadmap Epigenome endocrine_pancreas Summary |
| effector_memory_CD4-positive,_alpha-beta_T_cell Summary |
| Roadmap Epigenome effector_memory_CD4-positive,_alpha-beta_T_cell Summary |
| ectodermal_cell Summary |
| Roadmap Epigenome ectodermal_cell Summary |
| duodenal_mucosa Summary |
| Roadmap Epigenome duodenal_mucosa Summary |
| common_myeloid_progenitor,_CD34-positive Summary |
| Roadmap Epigenome common_myeloid_progenitor,_CD34-positive Summary |
| colonic_mucosa Summary |
| Roadmap Epigenome colonic_mucosa Summary |
| cingulate_gyrus Summary |
| Roadmap Epigenome cingulate_gyrus Summary |
| chorionic_villus Summary |
| Roadmap Epigenome chorionic_villus Summary |
| chorion Summary |
| Roadmap Epigenome chorion Summary |
| cerebellum Summary |
| Roadmap Epigenome cerebellum Summary |
| CD8-positive,_alpha-beta_T_cell Summary |
| Roadmap Epigenome CD8-positive,_alpha-beta_T_cell Summary |
| CD8-positive,_alpha-beta_memory_T_cell Summary |
| Roadmap Epigenome CD8-positive,_alpha-beta_memory_T_cell Summary |
| CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell Summary |
| Roadmap Epigenome CD4-positive,_CD25-positive,_alpha-beta_regulatory_T_cell Summary |
| CD4-positive,_alpha-beta_T_cell Summary |
| Roadmap Epigenome CD4-positive,_alpha-beta_T_cell Summary |
| CD4-positive,_alpha-beta_memory_T_cell Summary |
| Roadmap Epigenome CD4-positive,_alpha-beta_memory_T_cell Summary |
| CD14-positive_monocyte Summary |
| Roadmap Epigenome CD14-positive_monocyte Summary |
| caudate_nucleus Summary |
| Roadmap Epigenome caudate_nucleus Summary |
| brain Summary |
| Roadmap Epigenome brain Summary |
| B_cell Summary |
| Roadmap Epigenome B_cell Summary |
| astrocyte Summary |
| Roadmap Epigenome astrocyte Summary |
| area_11_of_Brodmann Summary |
| Roadmap Epigenome area_11_of_Brodmann Summary |
| aorta Summary |
| Roadmap Epigenome aorta Summary |
| angular_gyrus Summary |
| Roadmap Epigenome angular_gyrus Summary |
| amnion Summary |
| Roadmap Epigenome amnion Summary |
| adrenal_gland Summary |
| Roadmap Epigenome adrenal_gland Summary |
| adipose_tissue Summary |
| Roadmap Epigenome adipose_tissue Summary |
| adipocyte Summary |
| Roadmap Epigenome adipocyte Summary |
| chromHMM |
| chromHMM tracks from Roadmap |
|
|
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|---|
| GeneCards genes TSS |
| GeneCards genes TSS v5.22 |
| GeneCards genes TSS (double elite) |
| GeneCards genes TSS (double elite) v5.22 |
| GeneHancer Regulatory Elements |
| Enhancers and promoters from GeneHancer v5.22 |
| GeneHancer Regulatory Elements (double elite) |
| Enhancers and promoters from GeneHancer (double elite) v5.22 |
| GeneHancer Regulatory Interactions |
| Interactions between GeneHancer regulatory elements and genes v5.22 |
| GeneHancer Regulatory Interactions (double elite) |
| Interactions between GeneHancer regulatory elements and genes (double elite) v5.22 |
| GeneHancer Regulatory Interactions (double elite) cluster view |
| Clustered interactions of GeneHancer regulatory elements and genes (double elite) v5.22 |
| GeneHancer Regulatory Interactions cluster view |
| Clustered interactions of GeneHancer regulatory elements and genes v5.22 |
|
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|---|
| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| p14
Fix Patches |
| Reference Assembly Fix Patch Sequence Alignments |
| p14
Alt Haplotypes |
| Reference Assembly Alternate Haplotype Sequence Alignments |
| Assembly |
| Assembly from Fragments |
| Assembly Tracks |
| Assembly identifiers, clones, and markers |
| STS Markers |
| STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps |
| Scaffolds |
| GRCh38 Defined Scaffold Identifiers |
| GRC Contigs |
| Genome Reference Consortium Contigs |
FISH Clones |
| Clones Placed on Cytogenetic Map Using FISH |
| Centromeres |
| Centromere Locations |
| Chromosome Band |
| Chromosome Bands Localized by FISH Mapping Clones |
| Clone Ends |
| Mapping of clone libraries end placements |
| Exome Probesets |
| Exome Capture Probesets and Targeted Region |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| GRC Incident |
| GRC Incident Database |
| Hg19 Diff |
| Contigs New to GRCh38/(hg38), Not Carried Forward from GRCh37/(hg19) |
| INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| LiftOver & ReMap |
| UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg19 |
| LRG Regions |
| Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Dec. 2013 (GRCh38/hg38) Assembly |
| Mappability |
| Hoffman Lab Umap and Bismap Mappability |
| Umap |
| Single-read and multi-read mappability by Umap |
| Bismap |
| Single-read and multi-read mappability after bisulfite conversion |
| updated
Problematic Regions |
| Problematic/special genomic regions for sequencing or very variable regions |
| new
GIAB Problematic Regions |
| Difficult regions from GIAB via NCBI |
| Highly Reproducible Regions |
| Highly Reproducible genomic regions for sequencing |
| Problematic Regions |
| Problematic/special genomic regions for sequencing or very variable regions |
| Recomb Rate |
| Recombination rate: Genetic maps from deCODE and 1000 Genomes |
| Recomb. 1k Genomes |
| Recombination rate: 1000 Genomes, lifted from hg19 (PR Loh) |
| Recomb. deCODE Dmn |
| Recombination rate: De-novo mutations found in deCODE samples |
| Recomb. deCODE Evts |
| Recombination events in deCODE Genetic Map (zoom to < 10kbp to see the events) |
| Recomb. deCODE Mat |
| Recombination rate: deCODE Genetics, maternal |
| Recomb. deCODE Pat |
| Recombination rate: deCODE Genetics, paternal |
| Recomb. deCODE Avg |
| Recombination rate: deCODE Genetics, average from paternal and maternal (mat for chrX) |
| RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
|
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|
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|---|
| updated
GENCODE V47 |
| GENCODE V47 |
| NCBI RefSeq |
| RefSeq genes from NCBI |
| CCDS |
| Consensus CDS |
| CRISPR Targets |
| CRISPR/Cas9 -NGG Targets, whole genome |
| GENCODE Archive |
| GENCODE Archive |
| GENCODE V36 |
| GENCODE V36 |
| GENCODE V38 |
| GENCODE V38 |
| GENCODE V39 |
| GENCODE V39 |
| GENCODE V43 |
| GENCODE V43 |
| GENCODE V44 |
| GENCODE V44 |
| GENCODE V45 |
| GENCODE V45 |
| GENCODE V46 |
| GENCODE V46 |
| updated
GENCODE Versions |
| Container of all new and previous GENCODE releases |
| GENCODE V20 (Ensembl 76) |
| Gene Annotations from GENCODE Version 20 (Ensembl 76) |
| All GENCODE V22 |
| All GENCODE transcripts including comprehensive set V22 |
| All GENCODE V23 |
| All GENCODE transcripts including comprehensive set V23 |
| All GENCODE V24 |
| All GENCODE transcripts including comprehensive set V24 |
| All GENCODE V25 |
| All GENCODE transcripts including comprehensive set V25 |
| All GENCODE V26 |
| All GENCODE annotations from V26 (Ensembl 88) |
| All GENCODE V27 |
| All GENCODE annotations from V27 (Ensembl 90) |
| All GENCODE V28 |
| All GENCODE annotations from V28 (Ensembl 92) |
| All GENCODE V29 |
| All GENCODE annotations from V29 (Ensembl 94) |
| All GENCODE V30 |
| All GENCODE annotations from V30 (Ensembl 96) |
| All GENCODE V31 |
| All GENCODE annotations from V31 (Ensembl 97) |
| All GENCODE V32 |
| All GENCODE annotations from V32 (Ensembl 98) |
| All GENCODE V33 |
| All GENCODE annotations from V33 (Ensembl 99) |
| All GENCODE V34 |
| All GENCODE annotations from V34 (Ensembl 100) |
| All GENCODE V35 |
| All GENCODE annotations from V35 (Ensembl 101) |
| All GENCODE V36 |
| All GENCODE annotations from V36 (Ensembl 102) |
| All GENCODE V37 |
| All GENCODE annotations from V37 (Ensembl 103) |
| All GENCODE V38 |
| All GENCODE annotations from V38 (Ensembl 104) |
| All GENCODE V39 |
| All GENCODE annotations from V39 (Ensembl 105) |
| All GENCODE V40 |
| All GENCODE annotations from V40 (Ensembl 106) |
| All GENCODE V41 |
| All GENCODE annotations from V41 (Ensembl 107) |
| All GENCODE V42 |
| All GENCODE annotations from V42 (Ensembl 108) |
| All GENCODE V43 |
| All GENCODE annotations from V43 (Ensembl 109) |
| All GENCODE V44 |
| All GENCODE annotations from V44 (Ensembl 110) |
| All GENCODE V45 |
| All GENCODE annotations from V45 (Ensembl 111) |
| All GENCODE V46 |
| All GENCODE annotations from V46 (Ensembl 112) |
| new
All GENCODE V47 |
| All GENCODE annotations from V47 (Ensembl 113) |
| HGNC |
| HUGO Gene Nomenclature |
IKMC Genes Mapped |
| International Knockout Mouse Consortium Genes Mapped to Human Genome |
| LRG Transcripts |
| Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations |
| MANE |
| MANE Select Plus Clinical: Representative transcript from RefSeq & GENCODE |
| MGC/ORFeome Genes |
| MGC/ORFeome Full ORF mRNA Clones |
| ORFeome Clones |
| ORFeome Collaboration Gene Clones |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| Non-coding RNA |
| RNA sequences that do not code for a protein |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
| sno/miRNA |
| C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase |
|
lincRNA TUCP |
| lincRNA and TUCP transcripts |
|
lincRNA RNA-Seq |
| lincRNA RNA-Seq reads expression abundances |
| Old UCSC Genes |
| Previous Version of UCSC Genes |
| Other RefSeq |
| Non-Human RefSeq Genes |
| Pfam in GENCODE |
| Pfam Domains in GENCODE Genes |
| Prediction Archive |
| Gene Prediction Archive |
| SIB Genes |
| Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs |
| SGP Genes |
| SGP Gene Predictions Using Mouse/Human Homology |
| Genscan Genes |
| Genscan Gene Predictions |
| Geneid Genes |
| Geneid Gene Predictions |
| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| RetroGenes V9 |
| Retroposed Genes V9, Including Pseudogenes |
| TransMap V5 |
| TransMap Alignments Version 5 |
| TransMap ESTs |
| TransMap EST Mappings Version 5 |
| TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
| TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
| TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
| UCSC Alt Events |
| Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes |
| UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
|
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|---|
| OMIM |
| Online Mendelian Inheritance in Man |
| OMIM Cyto Loci |
| OMIM Cytogenetic Loci Phenotypes - Gene Unknown |
| OMIM Genes |
| OMIM Gene Phenotypes - Dark Green Can Be Disease-causing |
| OMIM Alleles |
| OMIM Allelic Variant Phenotypes |
| AbSplice Scores |
| Aberrant Splicing Prediction Scores |
| CADD 1.6 |
| CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions |
| CADD 1.6 Ins |
| CADD 1.6 Score: Insertions - label is length of insertion |
| CADD 1.6 Del |
| CADD 1.6 Score: Deletions - label is length of deletion |
| CADD 1.6 |
| CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores) |
| new
CADD 1.7 |
| CADD 1.7 Score for all single-basepair mutations and selected insertions/deletions |
| new
CADD 1.7 Ins |
| CADD 1.7 Score: Insertions - label is length of insertion |
| new
CADD 1.7 Del |
| CADD 1.7 Score: Deletions - label is length of deletion |
| new
CADD 1.7 |
| CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores) |
| Cancer Gene Expr |
| Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
| Cancer Transc Expr |
| Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
| Cancer Gene Expr |
| Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) |
| new
ClinGen |
| ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity) |
ClinGen CNVs |
| Clinical Genome Resource (ClinGen) CNVs |
| ClinVar Variants |
| ClinVar Variants |
| Constraint scores |
| Human constraint scores |
| UKB Depl. Rank Score |
| UK Biobank / deCODE Genetics Depletion Rank Score |
| HMC |
| HMC - Homologous Missense Constraint Score on PFAM domains |
| JARVIS |
| JARVIS: score to prioritize non-coding regions for disease relevance |
|
Coriell CNVs |
| Coriell Cell Line Copy Number Variants |
| COSMIC |
| Catalogue of Somatic Mutations in Cancer V98 |
|
COSMIC Regions |
| Catalogue of Somatic Mutations in Cancer V82 |
| COVID Data |
| Container of SARS-CoV-2 data |
| COVID Rare Harmful Var |
| Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort |
| COVID GWAS v3 |
| GWAS meta-analyses from the COVID-19 Host Genetics Initiative |
| COVID GWAS v4 |
| COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020) |
| DECIPHER CNVs |
| DECIPHER CNVs |
| DECIPHER SNVs |
| DECIPHER: Chromosomal Imbalance and Phenotype in Humans (SNVs) |
| Development Delay |
| Copy Number Variation Morbidity Map of Developmental Delay |
| Dosage Sensitivity |
| pHaplo and pTriplo dosage sensitivity map from Collins et al 2022 |
| GenCC |
| GenCC: The Gene Curation Coalition Annotations |
| Gene Interactions |
| Protein Interactions from Curated Databases and Text-Mining |
| GeneReviews |
| GeneReviews |
| GWAS Catalog |
| NHGRI-EBI Catalog of Published Genome-Wide Association Studies |
| HGMD public |
| Human Gene Mutation Database - Public Version Dec 2023 |
| LOVD Variants |
| LOVD: Leiden Open Variation Database Public Variants |
| Orphanet |
| Orphadata: Aggregated Data From Orphanet |
| PanelApp |
| Genomics England PanelApp Diagnostics |
|
REVEL Scores |
| REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score) |
| SNPedia |
| SNPedia |
| new
SpliceAI |
| SpliceAI: Splice Variant Prediction Score |
| SpliceAI indels (masked) |
| SpliceAI Indels (masked) |
| SpliceAI SNVs (masked) |
| SpliceAI SNVs (masked) |
| SpliceAI indels |
| SpliceAI Indels (unmasked) |
| SpliceAI SNVs |
| SpliceAI SNVs (unmasked) |
| TCGA Pan-Cancer |
| TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33) |
| UniProt Variants |
| UniProt/SwissProt Amino Acid Substitutions |
| Variants in Papers |
| Genetic Variants mentioned in scientific publications |
| Mastermind Variants |
| Genomenon Mastermind Variants extracted from full text publications |
| Avada Variants |
| Avada Variants extracted from full text publications |
|
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|---|
| Multiple Alignment |
| Multiple Alignment on 90 human genome assemblies |
| Pairwise Alignments |
| Human Genomes, Chain/Net pairwise alignments, as mapped by the HPRC project |
| Rearrangements |
| Rearrangements including indels, inversions, and duplications |
| Short Variants |
| Short Variants |
| HPRC Variants > 3bp |
| HPRC VCF variants filtered for items size > 3bp |
| HPRC Variants <= 3bp |
| HPRC VCF variants filtered for items size <= 3bp |
| HPRC All Variants |
| HPRC variants decomposed from hprc-v1.0-mc.grch38.vcfbub.a100k.wave.vcf.gz (Liao et al 2023), no size filtering |
|
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|---|
| Human ESTs |
| Human ESTs Including Unspliced |
| Human mRNAs |
| Human mRNAs from GenBank |
| Other ESTs |
| Non-Human ESTs from GenBank |
| Other mRNAs |
| Non-Human mRNAs from GenBank |
| SIB Alt-Splicing |
| Alternative Splicing Graph from Swiss Institute of Bioinformatics |
| Spliced ESTs |
| Human ESTs That Have Been Spliced |
|
|
|
|
|---|
| GTEx Gene V8 |
| Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019) |
| GTEx RNA-Seq Coverage |
| GTEx V8 RNA-Seq Read Coverage by Tissue |
| Affy Archive |
| Affymetrix Archive |
| Affy U95 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U95 |
| Affy U133 |
| Alignments of Affymetrix Consensus/Exemplars from HG-U133 |
| Affy GNF1H |
| Alignments of Affymetrix Consensus/Exemplars from GNF1H |
| EPDnew Promoters |
| Promoters from EPDnew |
| GNF Atlas 2 |
| GNF Expression Atlas 2 |
|
GTEx Gene |
| Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) |
| GTEx Transcript |
| Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors |
| GWIPS-viz Riboseq |
| Ribosome Profiling from GWIPS-viz |
| miRNA Tissue Atlas |
| Tissue-Specific microRNA Expression from Two Individuals |
| Single Cell Expression |
| Single cell RNA expression levels cell types from many organs |
|
|
|
|
|---|
| Blood (PBMC) Hao |
| Peripheral blood mononuclear cells (PBMC) from Hao et al 2020 |
| Blood PBMC Time |
| Blood PBMCs binned by time into experiment from Hao et al 2020 |
| Blood PBMC Phase |
| Blood PBMCs binned by phase of cell cycle from Hao et al 2020 |
| Blood PBMC Donor |
| Blood PBMCs binned by blood donor from Hao et al 2020 |
| Blood PBMC Cells 3 |
| Blood PBMCs binned by cell type (level 3) from Hao et al 2020 |
| Blood PBMC Cells 2 |
| Blood PBMCs binned by cell type (level 2) from Hao et al 2020 |
| Blood PBMC Cells |
| Blood (PBMCs) binned by cell type (level 1) from Hao et al 2020 |
| Colon Wang |
| Colon single cell sequencing from Wang et al 2020 |
| Colon Donor |
| Colon cells binned by organ donor from Wang et al 2020 |
| Colon Cells |
| Colon cells binned by cell type from Wang et al 2020 |
| Cortex Velmeshev |
| Cerebral cortex single cell data from Velmeshev et al 2019 |
| Cortex Sex |
| Cerebral cortex RNA binned by sex of donor from Velmeshev et al 2019 |
| Cortex Sample |
| Cerebral cortex RNA binned by biosample from Velmeshev et al 2019 |
| Cortex Donor |
| Cerebral cortex RNA binned by organ donor from Velmeshev et al 2019 |
| Cortex Diagnosis |
| Cerebral cortex RNA binned by ASD/control diagnosis from Velmeshev et al 2019 |
| Cortex Cells |
| Cerebral cortex RNA binned by cell type from Velmeshev et al 2019 |
| Cross Tissue Nuclei |
| Single Nuclei sequenced across many tissues |
| GTEx Immune Atlas |
| GTEx single nuclei immune expression |
| Cross Tissue Details |
| Cross tissue nuclei full details |
| Cross Tissue Nuclei |
| Cross tissue nuclei RNA by tissue and cell type |
|
Fetal Gene Atlas |
| Fetal Gene Atlas from Cao et al 2020 |
| Fetal Sex |
| Fetal Gene Atlas binned by sex from Cao et al 2020 |
| Fetal RT Group |
| Fetal Gene Atlas binned by RT group from Cao et al 2020 |
| Fetal Organ |
| Fetal Gene Atlas binned by organ from Cao et al 2020 |
| Fetal Lineage |
| Fetal Gene Atlas binned by cell lineage and organ from Cao et al 2020 |
| Fetal Exp |
| Fetal Gene Atlas binned by experiment id from Cao et al 2020 |
| Fetal Donor ID |
| Fetal Gene Atlas binned by donor ID from Cao et al 2020 |
| Fetal Cells |
| Fetal Gene Atlas binned by cell type from Cao et al 2020 |
| Fetal Assay |
| Fetal Gene Atlas binned by assay (cell/nucleus) from Cao et al 2020 |
| Heart Cell Atlas |
| Heart single cell RNA data from https://heartcellatlas.com |
| Heart HCA Version |
| Heart cell RNA binned by 10x chemistry version from https://heartcellatlas.org |
| Heart HCA State |
| Heart cell RNA binned by cell state from https://heartcellatlas.org |
| Heart HCA Source |
| Heart cell RNA binned by source (nucleus vs whole cell) from https://heartcellatlas.org |
| Heart HCA Sex |
| Heart cell RNA binned by sex of donor from https://heartcellatlas.org |
| Heart HCA Sample |
| Heart cell RNA binned by biosample from https://heartcellatlas.org |
| Heart HCA Region |
| Heart cell RNA binned by region of collection from https://heartcellatlas.org |
| Heart HCA Donor |
| Heart cell RNA binned by organ donor from https://heartcellatlas.org |
| Heart HCA Cells |
| Heart cell RNA binned by cell type from https://heartcellatlas.org |
| Heart HCA Age |
| Heart cell RNA binned by age group of donor from https://heartcellatlas.org |
| Ileum Wang |
| Ileum single cell sequencing from Wang et al 2020 |
| Ileum Donor |
| Ileum cells binned by organ donor from Wang et al 2020 |
| Ileum Cells |
| Ileum cells binned by cell type from Wang et al 2020 |
| Kidney Stewart |
| Kidney single cell data from Stewart et al 2019 |
| Kidney Project |
| Kidney RNA binned by project from Stewart et al 2019 |
| Kidney Experiment |
| Kidney RNA binned by Experiment from Stewart et al 2019 |
| Kidney Details |
| Kidney RNA binned by detailed cell type from Stewart et al 2019 |
| Kidney Compartment |
| Kidney RNA binned by compartment from Stewart et al 2019 |
| Kidney Cells |
| Kidney RNA binned by merged cell type from Stewart et al 2019 |
| Kidney Broad CT |
| Kidney RNA binned by broad cell type from Stewart et al 2019 |
| Liver MacParland |
| Liver single cell sequencing from MacParland et al 2018 |
| Liver Donor |
| Liver cells binned by organ donor from MacParland et al 2018 |
| Liver Cells |
| Liver cells binned by cell type from MacParland et al 2018 |
| Liver Broad |
| Liver cells binned by broad cell type from MacParland et al 2018 |
| Lung Travaglini |
| Lung cells from from Travaglini et al 2020 |
| Lung Sample FACS |
| Lung cells FACS method binned by sample from Travaglini et al 2020 |
| Lung Sample |
| Lung cells 10x method binned by sample from Travaglini et al 2020 |
| Lung Organ FACS |
| Lung cells FACS method binned by organ from Travaglini et al 2020 |
| Lung Organ |
| Lung cells 10x method binned by organ from Travaglini et al 2020 |
| Lung Mag Sel |
| Lung cells 10x method binned by magnetic.selection from Travaglini et al 2020 |
| Lung Locat FACS |
| Lung cells FACS method binned by location from Travaglini et al 2020 |
| Lung Locat |
| Lung cells 10x method binned by location from Travaglini et al 2020 |
| Lung Label FACS |
| Lung cells FACS method binned by label from Travaglini et al 2020 |
| Lung Half Det FACS |
| Lung cells FACS method binned by merged cell type from Travaglini et al 2020 |
| Lung Half Det |
| Lung cells 10x method binned by halfway detailed cell type from Travaglini et al 2020 |
| Lung Gating FACS |
| Lung cells FACS method binned by gating from Travaglini et al 2020 |
| Lung Donor FACS |
| Lung cells FACS method binned by organ donor from Travaglini et al 2020 |
| Lung Donor |
| Lung cells 10x method binned by organ donor from Travaglini et al 2020 |
| Lung Detail FACS |
| Lung cells FACS method binned by detailed cell type from Travaglini et al 2020 |
| Lung Detail |
| Lung cells 10x method binned by detailed cell type from Travaglini et al 2020 |
| Lung Compart FACS |
| Lung cells FACS method binned by compartment from Travaglini et al 2020 |
| Lung Compart |
| Lung cells 10x method binned by compartment from Travaglini et al 2020 |
| Lung Cells FACS |
| Lung cells FACS method binned by merged cell type from Travaglini et al 2020 |
| Lung Cells |
| Lung cells 10x method binned by merged cell type from Travaglini et al 2020 |
| Muscle De Micheli |
| Muscle single cell data from De Micheli et al 2020 |
| Muscle Sample |
| Muscle RNA binned by biosample from De Micheli et al 2020 |
| Muscle Cells |
| Muscle RNA binned by cell type from De Micheli et al 2020 |
| Pancreas Baron |
| Pancreas single cell sequencing from Baron et al 2016 |
| Pancreas Donor |
| Pancreas cells binned by organ donor from Baron et al 2016 |
| Pancreas Details |
| Pancreas cells binned by detailed cell type from Baron et al 2016 |
| Pancreas Cells |
| Pancreas cells binned by cell type from Baron et al 2016 |
| Pancreas Batch |
| Pancreas cells binned by batch from Baron et al 2016 |
| Placenta Vento-Tormo |
| Placenta and decidua cells from from Vento-Tormo et al 2018 |
| Placenta Stage |
| Placenta and decidua cells binned by placental stage 10x from Vento-Tormo et al 2018 |
| Placenta Mat/Fet Ss2 |
| Placenta and decidua cells binned by maternal/fetal smart-seq2 from Vento-Tormo et al 2018 |
| Placenta Mat/Fet |
| Placenta and decidua cells binned by maternal/fetal 10x from Vento-Tormo et al 2018 |
| Placenta Loc Ss2 |
| Placenta and decidua cells binned by cell location smart-seq2 from Vento-Tormo et al 2018 |
| Placenta Loc |
| Placenta and decidua cells binned by cell location 10x from Vento-Tormo et al 2018 |
| Placenta Detail Ss2 |
| Placenta and decidua cells binned by detailed cell type smart-seq2 from Vento-Tormo et al 2018 |
| Placenta Detail |
| Placenta and decidua cells binned by detailed cell type 10x from Vento-Tormo et al 2018 |
| Placenta Cells Ss2 |
| Placenta and decidua cells binned by cell type smart-seq2 from Vento-Tormo et al 2018 |
| Placenta Cells |
| Placenta and decidua cells binned by cell type 10x from Vento-Tormo et al 2018 |
| Rectum Wang |
| Rectum single cell sequencing from Wang et al 2020 |
| Rectum Donor |
| Rectum cells binned by organ donor from Wang et al 2020 |
| Rectum Cells |
| Rectum cells binned by cell type from Wang et al 2020 |
|
Skin Sole-Boldo |
| Skin single cell data from Sole-Boldo et al 2020 |
| Skin Donor |
| Skin single cell RNA binned by skin donor from Sole-Boldo et al 2020 |
| Skin Cell+Age |
| Skin single cell RNA binned by cell type and donor's age from Sole-Boldo et all 2020 |
| Skin Cell |
| Skin single cell RNA binned by cell type from Sole-Boldo et al 2020 |
| Skin Age |
| Skin single cell RNA binned by skin donor's age from Sole-Boldo et al 2020 |
| Tabula Sapiens |
| Tabula Sapiens single cell RNA data from many tissues |
| Tabula Tissue Cell |
| Tabula sapiens RNA by tissue and cell type |
| Tabula Details |
| Tabula sapiens full details view |
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| ENCODE cCREs |
| ENCODE Candidate Cis-Regulatory Elements (cCREs) combined from all cell types |
| ENCODE Regulation |
| Integrated Regulation from ENCODE |
| TF ChIP |
| Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3 |
| TF Clusters |
| Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3 |
| DNase HS |
| DNase I Hypersensitivity in 95 cell types from ENCODE |
| DNase Signal |
| DNase I Hypersensitivity Signal Colored by Similarity from ENCODE |
| DNase Clusters |
| DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types) |
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Layered H3K27Ac |
| H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE |
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Layered H3K4Me3 |
| H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE |
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Layered H3K4Me1 |
| H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE |
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Transcription |
| Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| FANTOM5 |
| FANTOM5: Mapped transcription start sites (TSS) and their usage |
| TSS activity (TPM) |
| FANTOM5: TSS activity per sample (TPM) |
| TSS activity - read counts |
| FANTOM5: TSS activity per sample read counts |
| Max counts of CAGE reads |
| FANTOM5: Max counts of CAGE reads |
| Total counts of CAGE reads |
| FANTOM5: Total counts of CAGE reads |
| TSS peaks |
| FANTOM5: DPI peak, robust set |
| GeneHancer |
| GeneHancer Regulatory Elements and Gene Interactions |
| GTEx cis-eQTLs |
| GTEx fine-mapped cis-eQTLs |
| Hi-C and Micro-C |
| Comparison of Micro-C and In situ Hi-C protocols in H1-hESC and HFFc6 |
| JASPAR Transcription Factors |
| JASPAR Transcription Factor Binding Site Database |
| ORegAnno |
| Regulatory elements from ORegAnno |
| RefSeq Func Elems |
| NCBI RefSeq Functional Elements |
| ReMap ChIP-seq |
| ReMap Atlas of Regulatory Regions |
| VISTA Enhancers |
| VISTA Enhancers |
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| Conservation |
| Vertebrate Multiz Alignment & Conservation (100 Species) |
| Cactus 241-way |
| Cactus Alignment & Conservation of Zoonomia Placental Mammals (241 Species) |
| Cons 30 Primates |
| Mammals Multiz Alignment & Conservation (27 primates) |
| Primate Chain/Net |
| Primate Genomes, Chain and Net Alignments |
| Placental Chain/Net |
| Non-primate Placental Mammal Genomes, Chain and Net Alignments |
| Vertebrate Chain/Net |
| Non-placental Vertebrate Genomes, Chain and Net Alignments |
| Cactus 447-way |
| Cactus Alignment & Conservation on 447 mammal species, including Zoonomia genomes |
| CHM13 alignments |
| CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments |
| Multiz 470-way |
| Multiz Alignment & Conservation (470 mammals) |
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| dbSNP 155 |
| Short Genetic Variants from dbSNP release 155 |
| 1000 Genomes |
| 1000 Genomes Phase 3 |
| 1000G Ph3 Vars |
| 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels |
| 1000 Genomes Trios |
| Thousand Genomes Project Family VCF Trios |
| Array Probesets |
| Microarray Probesets |
| dbSNP Archive |
| dbSNP Track Archive |
| All SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) |
| Common SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples |
| Flagged SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc |
| Mult. SNPs(141) |
| Simple Nucleotide Polymorphisms (dbSNP 141) That Map to Multiple Genomic Loci |
| All SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) |
| Common SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples |
| Flagged SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc |
| Mult. SNPs(142) |
| Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci |
| All SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) |
| Common SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples |
| Flagged SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc |
| Mult. SNPs(144) |
| Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci |
| All SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) |
| Common SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples |
| Flagged SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc |
| Mult. SNPs(146) |
| Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci |
| All SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) |
| Common SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples |
| Flagged SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc |
| Mult. SNPs(147) |
| Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci |
| Flagged SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc |
| Common SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples |
| All SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) |
| Mult. SNPs(150) |
| Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci |
| Mult. SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci |
| Flagged SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc |
| All SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) |
| Common SNPs(151) |
| Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples |
| dbSNP 153 |
| Short Genetic Variants from dbSNP release 153 |
| dbVar Common Struct Var |
| NCBI Curated Common Structural Variants from dbVar |
| dbVar Conflict SV |
| NCBI dbVar Curated Conflict Variants |
| dbVar Common SV |
| NCBI dbVar Curated Common Structural Variants |
| DGV Struct Var |
| Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) |
| Genome In a Bottle |
| Genome In a Bottle Structural Variants and Trios |
| new
gnomAD Variants |
| Genome Aggregation Database (gnomAD) Genome and Exome Variants |
| new
gnomAD Structural Variants |
| Genome Aggregation Database (gnomAD) - Structural Variants v4.1 |
| new
gnomAD Rare CNV Variants |
| Genome Aggregation Database (gnomAD) - Rare CNV variants (<1% overall site frequency) v4.1 |
| new
gnomAD Constraint Metrics |
| Genome Aggregation Database (gnomAD) Predicted Constraint Metrics (LOEUF, pLI, and Z-scores) |
| gnomAD Mut Constraint |
| Gnocchi: Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation, includes chrX |
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gnomAD v2 |
| Genome Aggregation Database (gnomAD) Genome and Exome Variants v2.1 |
| gnomAD v3 |
| Genome Aggregation Database (gnomAD) Genome Variants v3 |
| gnomAD v3.1 |
| Genome Aggregation Database (gnomAD) Genome Variants v3.1 |
| gnomAD v3.1.1 |
| Genome Aggregation Database (gnomAD) Genome Variants v3.1.1 |
| new
gnomAD v4.1 |
| Genome Aggregation Database (gnomAD) Genome and Exome Variants v4.1 |
| Platinum Genomes |
| Platinum genome variants |
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| RepeatMasker |
| Repeating Elements by RepeatMasker |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| NuMTs Sequence |
| Nuclear mitochondrial DNA segments |
| RepeatMasker Viz. |
| Detailed Visualization of RepeatMasker Annotations |
| Segmental Dups |
| Duplications of >1000 Bases of Non-RepeatMasked Sequence |
| Self Alignment |
| Human Chained Self Alignments |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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