NCBI Genes Track Settings
 
NCBI Genes from NC_045512.2   (All Genes and Gene Predictions tracks)

Display mode:      Duplicate track

Label: Alternative/human readable gene name    Primary identifier for gene    NCBI Gene ID    Protein Product   

Color track by codons: Help on codon coloring

Show codon numbering:

Show only transcripts with these accessions:
 


Display data as a density graph:

Show only items with score at or above:   (range: 0 to 1000)

Data schema/format description and download
Assembly: SARS-CoV-2 Jan. 2020 (NC_045512.2)
Data last updated at UCSC: 2020-05-18 08:05:46

Description

The NCBI Gene track for the 13 Jan 2020 SARS-CoV-2 virus/GCF_009858895.2 genome assembly is constructed from the NCBI nuccore entry for NC_045512.2 https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2

Data Access

The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, the genome annotation is stored in a bigBed file that can be downloaded from the download server. Annotations can be converted to ASCII text by our tool bigBedToBed which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found on our utilities page. The tool can also be used to obtain features within a given range, for example:

bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/wuhCor1/ncbiGene.bb -chrom=NC_045512v2 -start=0 -end=29902 stdout

Please refer to our mailing list archives for questions, or our Data Access FAQ for more information.

Credits

This track was created by Max Haeussler and Brian Raney at UCSC, with help from Daniel Schmelter and many others. Thanks to NCBI and the US National Institutes of Health for making all data available for download.