IEDB Prediction IEDB Pred Macaque I Track Settings

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

IEDB Epitope Predictions, Macaque T-Cell Class I

Track collection: Immune Epitope Database and Analysis Resource (IEDB) HLA binding predictions

Description

All tracks in this collection (3)

Display mode: Reset to defaults

Shade of lowest-scoring items:

Display data as a density graph:

All subtracks:

List subtracks: only selected/visible all ()
	hide Configure	A*01	IEDB Predicted binding Macaque HLA T-Cell Class I A*01	Data format
	hide Configure	A*02	IEDB Predicted binding Macaque HLA T-Cell Class I A*02	Data format
	hide Configure	A*07	IEDB Predicted binding Macaque HLA T-Cell Class I A*07	Data format
	hide Configure	A*11	IEDB Predicted binding Macaque HLA T-Cell Class I A*11	Data format
	hide Configure	A1*02201	IEDB Predicted binding Macaque HLA T-Cell Class I A1*02201	Data format
	hide Configure	A1*02601	IEDB Predicted binding Macaque HLA T-Cell Class I A1*02601	Data format
	hide Configure	A2*0102	IEDB Predicted binding Macaque HLA T-Cell Class I A2*0102	Data format
	hide Configure	A7*0103	IEDB Predicted binding Macaque HLA T-Cell Class I A7*0103	Data format
	hide Configure	B*00101	IEDB Predicted binding Macaque HLA T-Cell Class I B*00101	Data format
	hide Configure	B*00301	IEDB Predicted binding Macaque HLA T-Cell Class I B*00301	Data format
	hide Configure	B*01	IEDB Predicted binding Macaque HLA T-Cell Class I B*01	Data format
	hide Configure	B*01001	IEDB Predicted binding Macaque HLA T-Cell Class I B*01001	Data format
	hide Configure	B*03901	IEDB Predicted binding Macaque HLA T-Cell Class I B*03901	Data format
	hide Configure	B*06601	IEDB Predicted binding Macaque HLA T-Cell Class I B*06601	Data format
	hide Configure	B*08	IEDB Predicted binding Macaque HLA T-Cell Class I B*08	Data format
	hide Configure	B*08301	IEDB Predicted binding Macaque HLA T-Cell Class I B*08301	Data format
	hide Configure	B*08701	IEDB Predicted binding Macaque HLA T-Cell Class I B*08701	Data format
	hide Configure	B*09001	IEDB Predicted binding Macaque HLA T-Cell Class I B*09001	Data format
	hide Configure	B*17	IEDB Predicted binding Macaque HLA T-Cell Class I B*17	Data format

Assembly: Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3)

Description

This track shows peptides that are predicted to be displayed by macaque class I MHCs.

Display Conventions and Configuration

Peptides are shaded by IC50 values and split into subtracks by HLA-alleles.

Methods

For human epitope prediction, binding affinity for all possible 9-mer peptides from each protein sequence to a set of 27 HLA alleles that are most frequent in the global population, using the SMM method available in the IEDB MHC class I binding prediction tool. All peptides with predicted binding affinity (expressed as IC50 nM) below previously optimized allele-specific thresholds were selected as predicted binders. In the case of rhesus macaque class I T cell epitope prediction, the binding affinity of all 9-mer peptides was predicted for a total of 19 alleles (7 Indian and 12 Chinese rhesus macaques) that are most frequent in these species. The binding affinity predictions utilized the "IEDB recommended" method from the IEDB MHC class I binding prediction tool. Peptides with the IEDB consensus percentile rank <= 1.0 were selected. Lower values for either IC50 or percentile rank indicate stronger binding.