UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	cyp-13A10	ZK1320.4	0	chrII 9,661,820	C. elegans CYP-13A10 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II)
2	ZC581.3	ZC581.3	n/a	chrI 6,653,325	contains similarity to Interpro domain IPR011046 (WD40 repeat-like)
3	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
4	F39G3.6	F39G3.6	n/a	chrV 4,712,695	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
5	F53B7.2	F53B7.2	n/a	chrV 10,993,353	F53B7.2 encodes a homolog of the functionally active Fmrf Receptor (FR; CG2114) of D. melanogaster; it is thus possible that F53B7.2 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12).
6	gmd-2	F56H6.5	n/a	chrI 12,293,092	gmd-2 encodes one of two C. elegans GDP-mannose dehydratases; in vitro, and when coexpressed with GER-1, GMD-2 catalyzes the formation of GDP-fucose from GDP-mannose; gmd-2 transcripts are generally present throughout larval and adult stages.
7	F07A11.1	F07A11.1	n/a	chrII 11,589,926	contains similarity to Homo sapiens Trichohyalin; ENSEMBL:ENSP00000357794
8	nhr-255	ZK678.2	n/a	chrX 15,743,376	C. elegans NHR-255 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000679 (Zinc finger, GATA-type), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
9	C04A11.1	C04A11.1	n/a	chrX 13,661,662	contains similarity to Sorghum bicolor Extensin precursor (Proline-rich glycoprotein).; SW:EXTN_SORBI
10	str-135	F21F8.10	n/a	chrV 8,280,076	C. elegans STR-135 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
11	C32D5.1	C32D5.1	n/a	chrII 6,344,783
12	F10B5.2	F10B5.2	n/a	chrII 8,145,954	contains similarity to Pfam domain PF05282 AAR2 protein contains similarity to Interpro domain IPR007946 (AAR2)
13	T15D6.8	T15D6.8	n/a	chrI 12,390,358	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
14	T27E7.6	T27E7.6	n/a	chrIV 14,541,148	contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR002291 (Phosphorylase kinase, gamma catalytic subunit)
15	taf-3	C11G6.1	n/a	chrX 16,334,113	taf-3 encodes the C. elegans ortholog of mammalian TAF3(TAFII140), a component of the RNA polymerase II TFIID transcription complex; TAF-3 contains a histone fold-like domain in its N-terminus and by homology, is predicted to function in transcriptional regulation; however, as loss of taf-3 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of taf-3 in C. elegans development and/or behavior is not yet known.
16	glt-5	Y53C12A.2	n/a	chrII 9,707,756	glt-5 encodes an ortholog of glutamate/aspartate and neutral amino acid transporters.
17	F35E8.9	F35E8.9	n/a	chrV 15,916,920	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
18	nhr-278	ZK6.1	n/a	chrV 409,173	C. elegans NHR-278 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000679 (Zinc finger, GATA-type), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
19	C17B7.10	C17B7.10	n/a	chrV 3,341,460	C17B7.10 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; C17B7.10 has no clear orthologs in other organisms.
20	R03D7.2	R03D7.2	n/a	chrII 10,933,886	contains similarity to Rhodopirellula baltica DNA-binding protein SMUBP-2.; TR:Q7UWP1
21	W03G1.4	W03G1.4	n/a	chrIV 509,467	contains similarity to Pfam domain PF06869 Protein of unknown function (DUF1258) contains similarity to Interpro domain IPR009667 (Protein of unknown function DUF1258)
22	ztf-11	F52F12.6	n/a	chrI 9,907,414	C. elegans ZTF-11 protein; contains similarity to Pfam domain PF01530 Zinc finger, C2HC type contains similarity to Interpro domain IPR002515 (Zinc finger, C2HC-type)
23	C07A9.10	C07A9.10	n/a	chrIII 9,685,849	contains similarity to Pfam domain: PF00442 (Ubiquitin carboxyl-terminal hydrolases family 2), Score=28.0, E-value=1e-05, N=1
24	srg-26	C10G8.1	n/a	chrV 5,332,145	C. elegans SRG-26 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
25	ZK822.2	ZK822.2	n/a	chrIV 11,922,736	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
26	srx-43	T10C6.3	n/a	chrV 16,018,889	C. elegans SRX-43 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
27	sri-70	Y61B8B.1	n/a	chrV 17,303,714	C. elegans SRI-70 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000883 (Cytochrome c oxidase, subunit I)
28	glb-17	F49E2.4	n/a	chrX 9,574,890	glb-17 encodes a globin with no obvious function in mass RNAi assays.
29	T01C3.1	T01C3.1	n/a	chrV 14,989,266	contains similarity to Pfam domains PF00169 (PH domain) , PF06920 (Dedicator of cytokinesis) contains similarity to Interpro domains IPR001849 (Pleckstrin-like), IPR000694 (Proline-rich region), IPR010703 (Dedicator of cytokinesis)
30	ZK697.1	ZK697.1	n/a	chrV 1,753,103
31	T21E12.3	T21E12.3	n/a	chrI 4,403,989	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domains IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
32	let-23	ZK1067.1	n/a	chrII 9,202,659	let-23 encodes an EGF-receptor-family transmembrane tyrosine kinase that affects viability, inductive signaling during development of the vulva, male spicule formation, posterior development of the epidermis, ovulation and behavioral quiescience during lethargus; it is genetically upstream of the let-60/RAS pathway with respect to viability and vulval development, is upstream of phosopholipase C gamma with respect to fertility and quiesence, and is expressed in vulval precursor cells and the ALA neuron.
33	C54E10.2	C54E10.2	n/a	chrV 18,829,031	contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR001125 (Recoverin), IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand)
34	W04G5.4	W04G5.4	n/a	chrI 11,631,445	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domains IPR008996 (Cytokine, IL-1-like), IPR006588 (Protein of unknown function PAW)
35	F08D12.13	F08D12.13	n/a	chrII 2,795,880
36	F54F3.4	F54F3.4	n/a	chrV 12,923,361	contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)
37	sra-8	AH6.12	n/a	chrII 9,538,328	C. elegans SRA-8 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
38	str-9	F57A10.1	n/a	chrV 15,759,569	C. elegans STR-9 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
39	C07C7.1	C07C7.1	n/a	chrIV 9,184,575	contains similarity to Mycoplasma pulmonis Hypothetical protein MYPU_0790.; TR:Q98RD0
40	C47A10.5	C47A10.5	n/a	chrV 17,775,721	C47A10.5 encodes a D-aspartate oxidase (DASPO), paralogous to F18E3.7 and F20H11.5; recombinant C47A10.5 protein has DASPO acvitity on acidic D-amino acid substrates (e.g., D-aspartate, D-glutamate, or N-methyl-D-aspartate/NMDA), with highest catalytic efficiency on D-glutamate; since the C-terminal residues of C47A10.5 match the PTS1 consensus sequence, C47A10.5 is predicted to be peroxisomal.
41	W05H5.3	W05H5.3	n/a	chrII 12,446,465	contains similarity to Pfam domain PF01384 Phosphate transporter family contains similarity to Interpro domain IPR001204 (Phosphate transporter)
42	F09F3.5	F09F3.5	n/a	chrV 13,851,828	contains similarity to Pfam domain PF03098 Animal haem peroxidase contains similarity to Interpro domains IPR010255 (Haem peroxidase), IPR002007 (Haem peroxidase, animal)
43	Y57G11B.1	Y57G11B.1	n/a	chrIV 14,550,857	contains similarity to Trichomonas vaginalis G3 Viral A-type inclusion protein, putative.; TR:A2EJ43
44	T01G9.3	T01G9.3	n/a	chrI 8,283,218	contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (9), PF01463 (Leucine rich repeat C-terminal domain) contains similarity to Interpro domains IPR000483 (Cysteine-rich flanking region, C-terminal), IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)
45	gur-5	ZK622.2	n/a	chrII 5,287,091	C. elegans GUR-5 protein ;
46	srd-47	F17A2.11	n/a	chrX 12,334,389	C. elegans SRD-47 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
47	W04G5.7	W04G5.7	n/a	chrI 11,653,511	contains similarity to Pfam domain PF05075 Protein of unknown function (DUF684) contains similarity to Interpro domain IPR007767 (Protein of unknown function DUF684)
48	C16D6.3	C16D6.3	n/a	chrX 12,526,895	contains similarity to Prochlorococcus marinus Predicted protein.; TR:Q7VCK1
49	pde-5	C32E12.2	n/a	chrI 5,198,010	C. elegans PDE-5 protein; contains similarity to Pfam domains PF01590 (GAF domain) , PF00233 (3'5'-cyclic nucleotide phosphodiesterase) contains similarity to Interpro domains IPR002073 (3'5'-cyclic nucleotide phosphodiesterase), IPR003018 (GAF), IPR003607 (Metal-dependent phosphohydrolase, HD region)
50	ZK1307.9	ZK1307.9	n/a	chrII 9,650,113	contains similarity to Pfam domain PF04502 Family of unknown function (DUF572) contains similarity to Interpro domain IPR007590 (Protein of unknown function DUF572)