UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	wrt-7	ZK1037.10	0	chrV 15,336,119	wrt-7 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Wart domain, and a Hint/Hog domain; the Hint/Hog domain is predicted to cut WRT-7 into two halves and then covalently link cholesterol to the C-terminus of the Wart domain; the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; WRT-7 is required for normal growth to full size and locomotion; both of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
2	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
3	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
4	F59A1.13	F59A1.13	n/a	chrV 17,689,072	contains similarity to Pfam domains PF00610 (Domain found in Dishevelled, Egl-10, and Pleckstrin) , PF00595 (PDZ domain (Also known as DHR or GLGF)) , PF02377 (Dishevelled specific domain) contains similarity to Interpro domains IPR003351 (Dishevelled protein), IPR011991 (Winged helix repressor DNA-binding), IPR001478 (PDZ/DHR/GLGF), IPR015506 (Dishevelled related protein), IPR008339 (Dishevelled region), IPR000591 (Pleckstrin/ G-protein, interacting region)
5	pqn-29	F10F2.9	n/a	chrIII 4,645,137	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
6	F07A11.1	F07A11.1	n/a	chrII 11,589,926	contains similarity to Homo sapiens Trichohyalin; ENSEMBL:ENSP00000357794
7	W06D11.3	W06D11.3	n/a	chrX 12,299,278	contains similarity to Saccharomyces cerevisiae Involved in maintaining genome stability. Homologous to E. coli RecQ and human BLM and WRN proteins that are defective in the cancer-prone disorder Bloom's syndrome and the premature aging disorder Werner's syndrome, respectively; SGD:YMR190C
8	F23F1.6	F23F1.6	n/a	chrII 36,279	contains similarity to Pfam domain PF00324 Amino acid permease contains similarity to Interpro domains IPR004755 (Cationic amino acid transport permease), IPR004841 (Amino acid permease-associated region), IPR002293 (Amino acid/polyamine transporter I)
9	Y6E2A.5	Y6E2A.5	n/a	chrV 15,717,512	contains similarity to Pfam domain PF05218 Protein of unknown function (DUF713) contains similarity to Interpro domain IPR007883 (Protein of unknown function DUF713)
10	T10B11.2	T10B11.2	n/a	chrI 6,934,027	contains similarity to Pfam domain PF00781 Diacylglycerol kinase catalytic domain (presumed) contains similarity to Interpro domain IPR001206 (Diacylglycerol kinase, catalytic region)
11	ZC190.2	ZC190.2	n/a	chrV 8,682,033	contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domains IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR000366 (Fungal pheromone mating factor STE2 GPCR)
12	srh-187	F10G2.8	n/a	chrV 7,339,214	C. elegans SRH-187 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
13	vps-26	T20D3.7	n/a	chrIV 9,340,583	C. elegans VPS-26 protein; contains similarity to Pfam domain PF03643 Vacuolar protein sorting-associated protein 26 contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR005377 (Vacuolar protein sorting-associated protein 26)
14	F31A9.2	F31A9.2	n/a	chrX 1,795,240
15	C09F5.3	C09F5.3	n/a	chrIII 664,551	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
16	scl-19	ZK384.1	n/a	chrV 18,732,354	C. elegans SCL-19 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
17	C15C8.4	C15C8.4	n/a	chrV 12,746,483	contains similarity to Pfam domain PF06401 Alpha-2-macroglobulin RAP, C-terminal domain contains similarity to Interpro domains IPR010483 (Alpha-2-macroglobulin RAP, C-terminal), IPR009066 (Alpha-2-macroglobulin receptor-associated protein, domain 1)
18	lys-9	C54C8.6	n/a	chrI 12,455,280	C. elegans LYS-9 protein; contains similarity to Interpro domain IPR017853 (Glycoside hydrolase, catalytic core)
19	F43C1.3	F43C1.3	n/a	chrIII 4,244,006	F43C1.3 encodes a protein containing an HIT-type zinc finger domain and a coiled-coil region; loss of F43C1.3 activity via RNAi results in slower than normal growth rates.
20	sup-10	R09G11.1	n/a	chrX 17,529,998	C. elegans SUP-10 protein ;
21	tag-342	B0464.8	n/a	chrIII 9,468,896	C. elegans TAG-342 protein ;
22	R144.5	R144.5	n/a	chrIII 5,000,320	contains similarity to Homo sapiens Isoform 1 of Smith-Magenis syndrome chromosomal region candidate gene 8 protein; ENSEMBL:ENSP00000379048
23	F02H6.4	F02H6.4	n/a	chrIV 14,217,678	contains similarity to Saccharomyces cerevisiae GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2; SGD:YAL035W
24	duo-1	F38B7.5	n/a	chrV 11,556,440	C. elegans DUO-1 protein; contains similarity to Pfam domains PF00443 (Ubiquitin carboxyl-terminal hydrolase) , PF02338 (OTU-like cysteine protease) contains similarity to Interpro domains IPR003323 (Ovarian tumour, otubain), IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
25	acbp-5	T12D8.3	n/a	chrIII 13,640,695	C. elegans ACBP-5 protein; contains similarity to Pfam domains PF00023 (Ankyrin repeat) (2), PF00887 (Acyl CoA binding protein) contains similarity to Interpro domains IPR014352 (FERM/acyl-CoA-binding protein, 3-helical bundle), IPR002110 (Ankyrin), IPR000582 (Acyl-CoA-binding protein, ACBP)
26	W05H12.2	W05H12.2	n/a	chrI 13,412,326	contains similarity to Pfam domain PF01612 3'-5' exonuclease contains similarity to Interpro domains IPR002562 (3'-5' exonuclease), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
27	scrt-1	C55C2.1	n/a	chrI 2,569,754	C. elegans SCRT-1 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007086 (Zinc finger, C2H2-subtype), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)
28	cyp-25A4	C36A4.6	n/a	chrIII 3,850,968	C. elegans CYP-25A4 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002402 (Cytochrome P450, E-class, group II), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
29	srh-132	T27C5.5	n/a	chrV 17,410,948	C. elegans SRH-132 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	W03F8.3	W03F8.3	n/a	chrIV 5,187,201	contains similarity to Pfam domains PF00472 (Peptidyl-tRNA hydrolase domain) , PF03462 (PCRF domain) contains similarity to Interpro domains IPR005139 (PCRF), IPR000352 (Class I peptide chain release factor)
31	C33A12.12	C33A12.12	n/a	chrIV 9,483,553	contains similarity to Interpro domains IPR000225 (Armadillo), IPR016024 (Armadillo-type fold)
32	K12D9.1	K12D9.1	n/a	chrV 3,015,027	contains similarity to Pfam domains PF08242 (Methyltransferase domain) , PF08241 (Methyltransferase domain) , PF01209 (ubiE/COQ5 methyltransferase family) contains similarity to Interpro domains IPR004033 (UbiE/COQ5 methyltransferase), IPR013217 (Methyltransferase type 12), IPR013216 (Methyltransferase type 11)
33	F10B5.2	F10B5.2	n/a	chrII 8,145,954	contains similarity to Pfam domain PF05282 AAR2 protein contains similarity to Interpro domain IPR007946 (AAR2)
34	T12G3.4	T12G3.4	n/a	chrIV 12,049,069	contains similarity to Pfam domain PF03088 Strictosidine synthase contains similarity to Interpro domains IPR004141 (Strictosidine synthase), IPR011042 (Six-bladed beta-propeller, TolB-like)
35	F35C8.8	F35C8.8	n/a	chrX 5,373,263
36	fbxa-67	T12B5.11	n/a	chrIII 949,956	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
37	mdt-4	ZK546.13	n/a	chrII 4,943,020	C. elegans MDT-4 protein ; contains similarity to Drosophila melanogaster Flybase gene name is MED4-PA;; FLYBASE:CG8609
38	T20D4.6	T20D4.6	n/a	chrV 3,411,676	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR014752 (Arrestin, C-terminal), IPR011021 (Arrestin-like, N-terminal)
39	F14H12.8	F14H12.8	n/a	chrX 4,363,765
40	srh-20	C02E7.3	n/a	chrV 4,925,540	C. elegans SRH-20 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
41	egl-2	F16B3.1	n/a	chrV 1,294,353	egl-2 encodes a voltage-gated potassium channel that affects egg laying, muscle activation, defecation, mechanosensation, and chemosensation; expressed in the intestinal muscle, AFD, ALN, AQR, ASE, AWC, BAG, IL2, PLN, PQR, and URX neurons as well as a subset of sensory neurons in the male tail.
42	T13F2.2	T13F2.2	n/a	chrIV 9,797,072	contains similarity to Pfam domain PF02229 Transcriptional Coactivator p15 (PC4) contains similarity to Interpro domains IPR003173 (Transcriptional coactivator p15), IPR009044 (ssDNA-binding transcriptional regulator)
43	T01G9.3	T01G9.3	n/a	chrI 8,283,218	contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (9), PF01463 (Leucine rich repeat C-terminal domain) contains similarity to Interpro domains IPR000483 (Cysteine-rich flanking region, C-terminal), IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype)
44	T02G6.7	T02G6.7	n/a	chrI 11,828,074	contains similarity to Pfam domains PF00337 (Galactoside-binding lectin) , PF08277 (PAN-like domain) contains similarity to Interpro domains IPR006583 (CW), IPR001079 (Galectin, galactose-binding lectin), IPR013320 (Concanavalin A-like lectin/glucanase, subgroup), IPR008985 (Concanavalin A-like lectin/glucanase)
45	F27D9.7	F27D9.7	n/a	chrX 7,667,592	contains similarity to Pfam domain PF01421 Reprolysin (M12B) family zinc metalloprotease contains similarity to Interpro domain IPR001590 (Peptidase M12B, ADAM/reprolysin)
46	hst-1	F08B4.6	n/a	chrIV 8,689,875	C. elegans HST-1 protein; contains similarity to Pfam domain PF00685 Sulfotransferase domain contains similarity to Interpro domain IPR000863 (Sulphotransferase)
47	sri-70	Y61B8B.1	n/a	chrV 17,303,714	C. elegans SRI-70 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000883 (Cytochrome c oxidase, subunit I)
48	T19D2.3	T19D2.3	n/a	chrX 3,939,726
49	F52G3.3	F52G3.3	n/a	chrX 16,946,368	contains similarity to Medicago truncatula Putative uncharacterized protein.; TR:A2Q378
50	C33H5.8	C33H5.8	n/a	chrIV 7,778,475	contains similarity to Pfam domain PF00515 Tetratricopeptide repeat contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical), IPR001440 (Tetratricopeptide TPR-1), IPR013026 (Tetratricopeptide region)