UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	Y57G11B.2	Y57G11B.2	9.999999999999999e-92	chrIV 14,566,202	contains similarity to Guillardia theta Hypothetical protein orf176 from chromosome 3.; TR:Q98SC3
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	nhr-217	T09E11.2	n/a	chrI 12,341,975	C. elegans NHR-217 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
4	T09E11.6	T09E11.6	n/a	chrI 12,367,467	contains similarity to Pfam domain PF02485 Core-2/I-Branching enzyme contains similarity to Interpro domain IPR003406 (Glycosyl transferase, family 14)
5	T07C12.8	T07C12.8	n/a	chrV 9,954,532	contains similarity to Interpro domain IPR000998 (MAM)
6	ZC376.1	ZC376.1	n/a	chrV 14,179,216	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
7	srg-28	T09D3.2	n/a	chrV 5,335,592	C. elegans SRG-28 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
8	F22G12.1	F22G12.1	n/a	chrI 13,140,448	contains similarity to Interpro domain IPR000423 (Flagellar protein FlgJ type-1)
9	srh-282	T21D12.5	n/a	chrIV 272,850	C. elegans SRH-282 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
10	F16B12.7	F16B12.7	n/a	chrX 14,109,051	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
11	E02C12.9	E02C12.9	n/a	chrV 9,374,371	contains similarity to Pfam domains PF02958 (Domain of unknown function (DUF227)) , PF07914 (Protein of unknown function (DUF1679)) contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species), IPR004119 (Protein of unknown function DUF227), IPR015897 (CHK kinase-like)
12	R12C12.3	R12C12.3	n/a	chrII 6,030,297	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002184 (Serpentine beta receptor), IPR000276 (GPCR, rhodopsin-like)
13	C54E4.5	C54E4.5	n/a	chrIV 2,148,654	contains similarity to Pfam domain PF05153 Family of unknown function (DUF706) contains similarity to Interpro domain IPR007828 (Protein of unknown function DUF706)
14	T09B9.2	T09B9.2	n/a	chrX 9,763,139	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR005828 (General substrate transporter), IPR016196 (MFS general substrate transporter), IPR004745 (Na(+)-dependent inorganic phosphate cotransporter)
15	inft-1	F58B6.2	n/a	chrIII 1,107,561	C. elegans INFT-1 protein; contains similarity to Pfam domain PF02181 Formin Homology 2 Domain contains similarity to Interpro domains IPR015425 (Actin-binding FH2), IPR000694 (Proline-rich region), IPR003104 (Actin-binding FH2 and DRF autoregulatory)
16	phy-3	T20B3.7	n/a	chrV 16,836,164	C. elegans PHY-3 protein; contains similarity to Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily contains similarity to Interpro domains IPR006620 (Prolyl 4-hydroxylase, alpha subunit), IPR017853 (Glycoside hydrolase, catalytic core), IPR005123 (2OG-Fe(II) oxygenase)
17	T24B8.4	T24B8.4	n/a	chrII 9,067,183	contains similarity to Pfam domain PF02205 WH2 motif contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR003124 (Actin-binding WH2)
18	F58A4.6	F58A4.6	n/a	chrIII 9,614,710	contains similarity to Homo sapiens Hypothetical protein FLJ36688; ENSEMBL:ENSP00000256538
19	F31B12.2	F31B12.2	n/a	chrX 10,822,704	contains similarity to Mus musculus Splicing factor, arginine/serine-rich 12 (Serine-arginine-richssplicing regulatory protein 86) (SRrp86).; SW:SFRC_MOUSE
20	ceh-33	C10G8.7	n/a	chrV 5,323,911	ceh-33 encodes a Six/sine oculis class homeodomain transcription factor; preliminary RNAi experiments suggest that CEH-33 activity may be required for gonad development; a ceh-33::gfp reporter shows very weak pharyngeal expression in late embryos and early larvae.
21	srw-108	R11G11.5	n/a	chrV 528,386	C. elegans SRW-108 protein ;
22	K08F4.5	K08F4.5	n/a	chrIV 10,135,380	contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_96, whole genome shotgun sequence.; TR:A0EH68
23	twk-4	ZK1067.5	n/a	chrII 9,192,128	C. elegans TWK-4 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR013099 (Ion transport 2), IPR003092 (Potassium channel, two pore-domain, TASK)
24	D2063.2	D2063.2	n/a	chrV 4,330,780	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
25	col-164	T21D9.1	n/a	chrX 2,094,123	C. elegans COL-164 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat), IPR013286 (Annexin, type VII)
26	fbxb-65	C43D7.2	n/a	chrV 19,330,120	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
27	str-52	C45H4.12	n/a	chrV 2,145,082	C. elegans STR-52 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
28	clec-259	M162.1	n/a	chrV 19,786,034	C. elegans CLEC-259 protein; contains similarity to Pfam domain PF00337 Galactoside-binding lectin contains similarity to Interpro domains IPR001079 (Galectin, galactose-binding lectin), IPR013320 (Concanavalin A-like lectin/glucanase, subgroup), IPR007233 (Sybindin-like protein), IPR008985 (Concanavalin A-like lectin/glucanase)
29	srz-14	K05D4.3	n/a	chrV 16,184,163	C. elegans SRZ-14 protein ;
30	C25E10.7	C25E10.7	n/a	chrV 9,050,528	C25E10.7 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; C25E10.7 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; C25E10.7 has no obvious function in mass RNAi assays.
31	C01G6.7	C01G6.7	n/a	chrII 9,292,949	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
32	B0041.5	B0041.5	n/a	chrI 4,649,524	contains similarity to Interpro domain IPR010916 (TonB box, conserved site)
33	srh-44	B0334.7	n/a	chrII 11,516,530	C. elegans SRH-44 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
34	taf-12	Y56A3A.4	n/a	chrIII 11,865,724	taf-12 encodes a homolog of transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) with a glutamine/asparagine-rich N-terminal domain and a a TFIID-like C-terminal domain.
35	ceh-31	C33D12.1	n/a	chrX 3,069,626	ceh-31 encodes a protein containing a homeobox domain.
36	C49A1.10	C49A1.10	n/a	chrI 14,243,227	contains similarity to Mus musculus Proteinase activated receptor 3 precursor (PAR-3) (Thrombin receptor-slike 2) (Coagulation factor II receptor-like 2).; SW:PAR3_MOUSE
37	glb-31	Y57G7A.9	n/a	chrII 1,300,864	glb-31 encodes a globin with no obvious function in mass RNAi assays.
38	srb-6	R05H5.6	n/a	chrII 10,195,792	C. elegans SRB-6 protein; contains similarity to Pfam domains PF02117 (C.elegans Sra family integral membrane protein) , PF02175 (C.elegans integral membrane protein Srb) contains similarity to Interpro domains IPR002184 (Serpentine beta receptor), IPR000344 (Nematode chemoreceptor, Sra)
39	clec-218	W02D7.2	n/a	chrV 8,309,344	C. elegans CLEC-218 protein; contains similarity to Pfam domains PF00092 (von Willebrand factor type A domain) , PF00059 (Lectin C-type domain) contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002035 (von Willebrand factor, type A)
40	cyp-33D1	K05D4.4	n/a	chrV 16,174,796	C. elegans CYP-33D1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR008071 (Cytochrome P450, E-class, group I, CYP2J-like), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
41	ubq-2	ZK1010.1	n/a	chrIII 12,978,145	ubq-2 encodes a bifunctional protein that contains two domains; an N-terminal ubiquitin peptide, and a C-terminal large ribosomal subunit protein L40 peptide.
42	cyp-34A2	T10H4.11	n/a	chrV 15,290,031	C. elegans CYP-34A2 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
43	F19C7.4	F19C7.4	n/a	chrIV 4,604,373	contains similarity to Pfam domain PF05577 Serine carboxypeptidase S28 contains similarity to Interpro domain IPR008758 (Peptidase S28)
44	T05A8.5	T05A8.5	n/a	chrII 2,733,284	contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
45	F15A8.4	F15A8.4	n/a	chrX 4,408,576
46	ZK1307.4	ZK1307.4	n/a	chrII 9,651,306	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
47	C33B4.2	C33B4.2	n/a	chrII 11,371,111	contains similarity to Aristolochia gigantea RPB140 (EC 2.7.7.6) (DNA-directed RNA polymerase beta chain)s(Fragment).; TR:O48912
48	C34C6.2	C34C6.2	n/a	chrII 8,681,696	contains similarity to Homo sapiens KIAA1219; ENSEMBL:ENSP00000302059
49	srh-169	C49G7.2	n/a	chrV 4,048,582	C. elegans SRH-169 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
50	B0336.3	B0336.3	n/a	chrIII 5,713,118	contains similarity to Pfam domain PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar) contains similarity to Interpro domains IPR000571 (Zinc finger, CCCH-type), IPR000694 (Proline-rich region), IPR000504 (RNA recognition motif, RNP-1), IPR012677 (Nucleotide-binding, alpha-beta plait), IPR001984 (Peptidase S16, Lon protease)