UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	Y54E2A.12	Y54E2A.12	0	chrII 14,799,590	contains similarity to Interpro domain IPR000195 (RabGAP/TBC)
2	bag-1	F57B10.11	n/a	chrI 6,564,081	A homolog of the human BAG-family of co-chaperone proteins, negatively regulates Hsp70 and affects cell stress and cell growth.
3	T01B11.1	T01B11.1	n/a	chrIV 8,448,108	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
4	T19B4.5	T19B4.5	n/a	chrI 5,675,326
5	C11E4.7	C11E4.7	n/a	chrX 9,617,962
6	srbc-67	T24A6.10	n/a	chrV 3,539,627	C. elegans SRBC-67 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
7	W01G7.4	W01G7.4	n/a	chrII 14,061,584	contains similarity to Danio rerio Protein SLC7A6OS (Solute carrier family 7 member 6 opposite strandstranscript homolog).; SW:Q5U3I2
8	F28C6.1	F28C6.1	n/a	chrII 8,591,963	F28C6.1 encodes an AP-2-like transcription factor that is ~60% identical to that of F28C6.2 which lies immediately adjacent to F28C6.1 on chromosome II; loss of F28C6.1 activity via large-scale RNAi experiments results in embryonic and larval lethality.
9	thoc-2	C16A3.8	n/a	chrIII 6,370,914	C. elegans THOC-2 protein ; contains similarity to Homo sapiens THO complex 2 isoform 1; ENSEMBL:ENSP00000347959
10	coh-3	F08H9.1	n/a	chrV 14,458,664	coh-3 encodes a member of the Rad21/Rec8-like family of cohesion proteins that is expressed in the germline; an effect on embryonic viability has been reported based on some RNAi screens, but has not been demonstrated in others.
11	C04C3.4	C04C3.4	n/a	chrIV 3,394,502
12	Y48A6C.3	Y48A6C.3	n/a	chrIII 11,118,099	contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical), IPR015880 (Zinc finger, C2H2-like), IPR013026 (Tetratricopeptide region), IPR007087 (Zinc finger, C2H2-type)
13	rab-10	T23H2.5	n/a	chrI 6,457,920	rab-10 encodes a Rab-like GTPase that is a member of the Ras superfamily of small GTPases; rab-10 activity is required, upstream of rme-1, for basolateral endocytic recycling in the intestine, but not in oocytes or coelomocytes; a RAB-10::GFP fusion protein is widely expressed and in the intestine, localizes to endosomes and the Golgi.
14	F15H10.7	F15H10.7	n/a	chrV 10,404,755	contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domains IPR004245 (Protein of unknown function DUF229), IPR017850 (Alkaline-phosphatase-like, core domain)
15	F55A3.3	F55A3.3	n/a	chrI 10,791,127	contains similarity to Pfam domains PF08512 (Histone chaperone Rttp106-like) , PF08644 (FACT complex subunit (SPT16/CDC68)) , PF00557 (metallopeptidase family M24) contains similarity to Interpro domains IPR013719 (Region of unknown function DUF1747, eukaryote), IPR000994 (Peptidase M24, catalytic core), IPR013953 (FACT complex subunit Spt16p/Cdc68p)
16	K09F6.5	K09F6.5	n/a	chrII 2,272,724	contains similarity to Interpro domain IPR000358 (Ribonucleotide reductase)
17	R05D11.6	R05D11.6	n/a	chrI 8,597,435	contains similarity to Clostridium perfringens Hypothetical protein CPE2542.; TR:Q8XHE3
18	K07C5.2	K07C5.2	n/a	chrV 10,340,201	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
19	T12A2.6	T12A2.6	n/a	chrIII 6,243,060
20	H28G03.4	H28G03.4	n/a	chrX 5,223,420	contains similarity to Interpro domain IPR009057 (Homeodomain-like)
21	str-230	T16A9.2	n/a	chrV 14,209,976	C. elegans STR-230 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
22	F52C9.7	F52C9.7	n/a	chrIII 5,309,798	contains similarity to Interpro domain IPR002226 (Catalase)
23	cin-4	ZK1127.7	n/a	chrII 7,039,709	C. elegans CIN-4 protein
24	F32B4.1	F32B4.1	n/a	chrI 11,511,408	contains similarity to Pfam domain PF07801 Protein of unknown function (DUF1647) contains similarity to Interpro domain IPR012444 (Protein of unknown function DUF1647)
25	F21H12.1	F21H12.1	n/a	chrII 6,098,704	contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
26	ugt-32	F47C10.6	n/a	chrV 3,842,918	C. elegans UGT-32 protein; contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
27	mat-3	F10C5.1	n/a	chrIII 478,879	mat-3 encodes a tetratricopeptide repeat (TPR)-containing protein that is the C. elegans ortholog of CDC23/APC8, a conserved regulatory subunit of the anaphase-promoting complex; mat-3 activity is required for progression through metaphase of oocyte meiosis I, germline proliferation, and vulval development.
28	R05D3.2	R05D3.2	n/a	chrIII 8,373,629	R05D3.2 is orthologous to the human gene UNKNOWN (PROTEIN FOR MGC:16889) (C7orf2; OMIM:605522), which when mutated leads to disease.
29	pqn-45	F56F3.1	n/a	chrIII 4,473,243	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
30	gei-6	C05C8.4	n/a	chrV 7,228,595	C. elegans GEI-6 protein; contains similarity to Interpro domain IPR000694 (Proline-rich region)
31	F52C12.3	F52C12.3	n/a	chrIV 1,950,714
32	odr-7	T18D3.2	n/a	chrX 12,460,277	odr-7 encodes an olfactory-specific member of the nuclear receptor superfamily that affects chemotaxis to some volatile odorants and the cell fate of the AWA olfactory neurons; ODR-7 is expressed in the AWA neurons; in specifying the identity of the AWA neurons, ODR-7 appears to lie upstream of odr-10, which encodes a seven transmembrane domain olfactory receptor that is required for the response to diacetyl, an odorant detected by the AWA neurons.
33	F26A3.7	F26A3.7	n/a	chrI 7,675,432	contains similarity to Gallus gallus Putative uncharacterized protein.; TR:Q5ZIQ9
34	str-165	F55B12.6	n/a	chrV 13,832,194	C. elegans STR-165 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001358 (Neuropeptide Y2 receptor)
35	srsx-37	M01B2.7	n/a	chrV 15,258,341	C. elegans SRSX-37 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
36	F56A3.1	F56A3.1	n/a	chrI 5,192,666
37	ced-5	C02F4.1	n/a	chrIV 10,488,503	The ced-5 gene a homolog of the human protein DOCK180 that is required for the cell engulfment stage of programmed cell death.
38	F56D1.1	F56D1.1	n/a	chrII 5,479,410	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)
39	nhr-231	Y17D7B.1	n/a	chrV 18,792,886	C. elegans NHR-231 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
40	ugt-3	ZC455.3	n/a	chrV 12,799,239	C. elegans UGT-3 protein; contains similarity to Pfam domains PF04101 (Glycosyltransferase family 28 C-terminal domain) , PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase) contains similarity to Interpro domains IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR007235 (Glycosyl transferase, family 28, C-terminal)
41	Y66A7A.3	Y66A7A.3	n/a	chrIII 11,480,163	contains similarity to Interpro domain IPR009058 ()
42	F43H9.3	F43H9.3	n/a	chrV 8,024,072	contains similarity to Homo sapiens PAP associated domain containing 4; ENSEMBL:ENSP00000296783
43	T28F2.1	T28F2.1	n/a	chrI 3,640,560	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
44	pes-7	F09C3.1	n/a	chrI 14,267,298	pes-7 encodes an IQGAP ortholog; IQGAP proteins bind actin and CLIP-170, effect activities of the Rho family GTPases Rac1 and Cdc42, and function in cytokinesis; PES-7 is required for completing meiosis and mitosis, and for germline formation and maintenance; IQGAP's alpha-actinin domain is related distantly to alpha-actinin domains in calponin, transgelin (SM22 alpha), and the proto-oncogene Vav; a pes-7 reporter is first expressed in the ventral nerve cord of the elongating embryo and in later stages of development is also expressed in all major ganglia, the vulva, and in the spermathecal valves; in the ventral nerve cord, pes-7 expression is detected in nuclei as well as in cell bodies and neural processes.
45	ZC196.9	ZC196.9	n/a	chrV 8,724,688	contains similarity to Pfam domain PF04789 Protein of unknown function (DUF621) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR006874 (Protein of unknown function DUF621)
46	F25B4.4	F25B4.4	n/a	chrV 5,685,274
47	K02E7.3	K02E7.3	n/a	chrII 1,077,813	contains similarity to Pfam domain PF06869 Protein of unknown function (DUF1258) contains similarity to Interpro domain IPR009667 (Protein of unknown function DUF1258)
48	C49C3.7	C49C3.7	n/a	chrIV 17,333,023	contains similarity to Homo sapiens Isoform Short of CAP-Gly domain-containing linker protein 1; ENSEMBL:ENSP00000355314
49	ZC404.11	ZC404.11	n/a	chrV 6,803,107	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
50	dct-12	Y57A10C.7	n/a	chrII 12,431,464	C. elegans DCT-12 protein ;