UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	fbxa-218	Y49E10.17	0	chrIII 12,438,684	C. elegans FBXA-218 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
2	T19D2.1	T19D2.1	n/a	chrX 3,935,349	contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain) (4), PF01421 (Reprolysin (M12B) family zinc metalloprotease) contains similarity to Interpro domains IPR008085 (Thrombospondin, subtype 1), IPR000884 (Thrombospondin, type I), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR013273 (Peptidase M12B, ADAM-TS), IPR001590 (Peptidase M12B, ADAM/reprolysin)
3	K03H9.3	K03H9.3	n/a	chrII 6,423,912
4	F20B4.3	F20B4.3	n/a	chrX 17,706,033
5	C01H6.2	C01H6.2	n/a	chrI 7,206,143	contains similarity to Pfam domain PF00023 Ankyrin repeat contains similarity to Interpro domain IPR002110 (Ankyrin)
6	C49G7.7	C49G7.7	n/a	chrV 4,036,291
7	ubc-17	B0403.2	n/a	chrX 7,052,951	C. elegans UBC-17 protein; contains similarity to Pfam domain PF00179 Ubiquitin-conjugating enzyme contains similarity to Interpro domains IPR016135 (Ubiquitin-conjugating enzyme/RWD-like), IPR000608 (Ubiquitin-conjugating enzyme, E2)
8	str-30	T27C4.3	n/a	chrV 3,725,910	C. elegans STR-30 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	T22D1.1	T22D1.1	n/a	chrIV 6,924,455	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR001711 (Phospholipase C, phosphatidylinositol-specific, Y domain), IPR008166 (Protein of unknown function DUF23)
10	T03F7.5	T03F7.5	n/a	chrV 11,297,691	contains similarity to Staphylococcus aureus YdbT-like protein.; TR:Q8GPI5
11	F40F12.4	F40F12.4	n/a	chrIII 9,895,687	contains similarity to Interpro domain IPR000998 (MAM)
12	twk-30	F36A2.4	n/a	chrI 8,810,320	C. elegans TWK-30 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain) (2), PF07885 (Ion channel) (2)contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR008957 (Fibronectin, type III-like fold), IPR003961 (Fibronectin, type III), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR003962 (Fibronectin, type III subdomain), IPR013099 (Ion transport 2)
13	sre-1	B0495.1	n/a	chrII 7,710,540	sre-1 encodes a putative seven transmembrane chemoreceptor; an SRE-1::GFP reporter is expressed in the ADL and ASJ amphid sensory neurons.
14	ZK1053.2	ZK1053.2	n/a	chrI 13,233,396	contains similarity to Saccharomyces cerevisiae anchorage subunit of a-agglutinin; SGD:YNR044W
15	B0280.11	B0280.11	n/a	chrIII 7,137,323	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
16	aha-1	C25A1.11	n/a	chrI 10,195,452	aha-1 encodes an ortholog of human aryl-hydrocarbon receptor nuclear translocator; interacts with AHR-1 and HIF-1 in vitro, requires HIF-1 for proper localization, and is expressed ubiquitously.
17	C55C3.1	C55C3.1	n/a	chrIV 5,711,705	contains similarity to Pfam domains PF02886 (LBP / BPI / CETP family, C-terminal domain) , PF01273 (LBP / BPI / CETP family, N-terminal domain) contains similarity to Interpro domain IPR001124 (Lipid-binding serum glycoprotein)
18	ubq-2	ZK1010.1	n/a	chrIII 12,978,145	ubq-2 encodes a bifunctional protein that contains two domains; an N-terminal ubiquitin peptide, and a C-terminal large ribosomal subunit protein L40 peptide.
19	lin-52	ZK632.13	n/a	chrIII 9,824,348	lin-52 encodes a novel protein that is most closely related to the Drosophila melanogaster CG15929 protein and the human protein XP_040376; lin-52 is a class B synthetic multivulva (synMuv) gene that appears to function with lin-35/Rb to negatively regulate vulval development; in addition, lin-52 is also required for germline and larval development.
20	T22D1.11	T22D1.11	n/a	chrIV 6,927,277	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
21	fbxb-65	C43D7.2	n/a	chrV 19,330,120	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
22	C35D10.12	C35D10.12	n/a	chrIII 4,873,622	contains similarity to Pfam domains PF08242 (Methyltransferase domain) , PF08241 (Methyltransferase domain) contains similarity to Interpro domains IPR011644 (Haem NO binding), IPR013217 (Methyltransferase type 12), IPR013216 (Methyltransferase type 11)
23	C06A5.10	C06A5.10	n/a	chrI 5,982,746
24	F01G12.6	F01G12.6	n/a	chrX 16,401,117	contains similarity to Drosophila melanogaster Flybase gene name is CG11727-PA;; FLYBASE:CG11727
25	T22D1.12	T22D1.12	n/a	chrIV 6,930,087	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
26	F59B2.5	F59B2.5	n/a	chrIII 9,001,107	contains similarity to Pfam domain PF01399 PCI domain contains similarity to Interpro domains IPR013143 (PCI/PINT associated module), IPR011991 (Winged helix repressor DNA-binding), IPR000717 (Proteasome component region PCI)
27	D1007.15	D1007.15	n/a	chrI 4,560,680	contains similarity to Mus musculus Uncharacterized protein KIAA0195.; SW:Q7TSH8
28	F59A3.7	F59A3.7	n/a	chrI 5,517,931
29	T06E4.5	T06E4.5	n/a	chrV 9,631,723	contains similarity to Interpro domains IPR001046 (Natural resistance-associated macrophage protein), IPR001266 (Ribosomal protein S19e)
30	Y56A3A.6	Y56A3A.6	n/a	chrIII 11,874,979	contains similarity to Interpro domains IPR003072 (Orphan nuclear receptor, NOR1 type), IPR000694 (Proline-rich region), IPR002951 (Atrophin)
31	C06C3.8	C06C3.8	n/a	chrII 9,388,665	contains similarity to Pfam domain PF03353 DUF278 contains similarity to Interpro domains IPR005020 (Protein of unknown function DUF278), IPR001984 (Peptidase S16, Lon protease), IPR006578 (MADF)
32	T20H4.2	T20H4.2	n/a	chrIII 7,242,074	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
33	Y45F10A.3	Y45F10A.3	n/a	chrIV 13,511,278	contains similarity to Mus musculus Probable arylformamidase (EC 3.5.1.9) (Kynurenine formamidase) (KF).; SW:Q8K4H1
34	C14A11.5	C14A11.5	n/a	chrX 2,806,295
35	ZK354.6	ZK354.6	n/a	chrIV 5,296,718	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
36	cyp-33E2	F42A9.5	n/a	chrIV 8,613,501	C. elegans CYP-33E2 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
37	T28D6.7	T28D6.7	n/a	chrIII 11,345,403	contains similarity to Pfam domain PF01852 START domain contains similarity to Interpro domain IPR002913 (Lipid-binding START)
38	sra-22	F28C12.7	n/a	chrI 12,702,151	C. elegans SRA-22 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR001463 (Sodium:alanine symporter), IPR000344 (Nematode chemoreceptor, Sra)
39	E03H4.12	E03H4.12	n/a	chrI 12,436,494	contains similarity to Pfam domain PF03360 Glycosyltransferase family 43 contains similarity to Interpro domain IPR005027 (Glycosyl transferase, family 43)
40	F55H12.2	F55H12.2	n/a	chrI 8,868,112	contains similarity to Interpro domain IPR000242 (Tyrosine specific protein phosphatase)
41	ZK892.4	ZK892.4	n/a	chrII 10,007,287	ZK892.4 is orthologous to the human gene ALPHA-METHYLACYL-CoA RACEMASE (AMACR; OMIM:604489), which when mutated leads to AMACR deficiency.
42	srh-213	T22F3.5	n/a	chrV 3,593,857	C. elegans SRH-213 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
43	F57G4.9	F57G4.9	n/a	chrV 17,644,291	contains similarity to Xenopus laevis Putative uncharacterized protein.; TR:Q08AY0
44	nxf-1	C15H11.3	n/a	chrV 14,414,076	nxf-1 encodes a homolog of human TAP protein, a member of the NXF family of shuttling transport receptors for nuclear export of mRNA; binds RNA directly and its function has been shown to be conserved with the NXF family.
45	cdr-3	C54D10.2	n/a	chrV 12,416,844	C. elegans CDR-3 protein; contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR010987 (Glutathione S-transferase, C-terminal-like)
46	F41F3.1	F41F3.1	n/a	chrV 4,655,174
47	B0041.5	B0041.5	n/a	chrI 4,649,524	contains similarity to Interpro domain IPR010916 (TonB box, conserved site)
48	B0454.6	B0454.6	n/a	chrII 3,034,446	contains similarity to Pfam domain PF00324 Amino acid permease contains similarity to Interpro domains IPR004841 (Amino acid permease-associated region), IPR002293 (Amino acid/polyamine transporter I)
49	ZK1320.5	ZK1320.5	n/a	chrII 9,664,562	contains similarity to Interpro domain IPR008107 (Mycoplasma P48 major surface lipoprotein)
50	fbxb-107	F29A7.2	n/a	chrII 2,760,240	C. elegans FBXB-107 protein; contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated type 2)