UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	clec-239	Y102A5C.16	7e-98	chrV 16,957,229	C. elegans CLEC-239 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
2	kel-10	T16H12.6	n/a	chrIII 10,099,930	C. elegans KEL-10 protein; contains similarity to Pfam domains PF01344 (Kelch motif) (5), PF00651 (BTB/POZ domain) , PF07646 (Kelch motif) (2)contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000210 (BTB/POZ-like), IPR006652 (Kelch repeat type 1), IPR011333 (BTB/POZ fold), IPR011498 (Kelch repeat type 2), IPR015916 (Galactose oxidase, beta-propeller), IPR013069 (BTB/POZ), IPR013089 (Kelch related), IPR006651 (Kelch), IPR015915 (Kelch-type beta propeller)
3	K02A11.2	K02A11.2	n/a	chrI 9,745,095	contains similarity to Saccharomyces cerevisiae Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis; SGD:YGR159C
4	ZK945.7	ZK945.7	n/a	chrII 10,107,878	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IAV6
5	scrm-5	K08D10.8	n/a	chrIV 4,163,488	scrm-5 encodes a putative phospholipid scramblase homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1); scrm-5(RNAi) animals have no obvious phenotype.
6	Y39E4A.1	Y39E4A.1	n/a	chrIII 12,951,765	contains similarity to Mus musculus Nuclear protein ZAP3.; SW:ZAP3_MOUSE
7	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
8	F26F4.8	F26F4.8	n/a	chrIII 4,904,678	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
9	M70.4	M70.4	n/a	chrIV 2,258,333	M70.4 is orthologous to human O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE (FLJ20277; OMIM:606822), which when mutated leads to muscle-eye-brain disease.
10	scrm-8	K08D10.7	n/a	chrIV 4,165,432	scrm-8 encodes a putative phospholipid scramblase required for normally short lifespan; SCRM-8 is homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1).
11	ZK1053.4	ZK1053.4	n/a	chrI 13,243,185	contains similarity to Schizosaccharomyces pombe Nucleoporin nup124 (Nuclear pore protein nup124).; SW:N124_SCHPO
12	C09F9.1	C09F9.1	n/a	chrII 14,698,971	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
13	ZK1290.7	ZK1290.7	n/a	chrII 7,524,953	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
14	atg-2	M03A8.2	n/a	chrX 6,813,114	atg-2 encodes a large (2,275-residue) protein orthologous to the autophagic budding yeast protein Atg2p, and to human ATG2A and ATG2B; ATG-2 is expressed in larval and adult pharynx, intestine, body wall muscles, and neurons, as well as adult reproductive system; ATG-2 has no obvious phenotype in mass RNAi assays.
15	trf-1	F45G2.6	n/a	chrIII 13,431,808	The trf-1 gene encodes a protein with a meprin-associated Traf homology (MATH) domain that may be involved in apoptosis.
16	K02F6.1	K02F6.1	n/a	chrII 2,555,138	contains similarity to Pfam domain PF00098 Zinc knuckle contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR013084 (Zinc finger, CCHC retroviral-type), IPR001969 (Peptidase aspartic, active site), IPR001878 (Zinc finger, CCHC-type)
17	T05A8.1	T05A8.1	n/a	chrII 2,709,077
18	C44F1.2	C44F1.2	n/a	chrIII 3,769,375	contains similarity to Pfam domains PF01342 (SAND domain) , PF02178 (AT hook motif) contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR010919 (SAND-like), IPR000770 (SAND)
19	C01G5.3	C01G5.3	n/a	chrIV 6,537,601	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000352916
20	clec-109	F17B5.3	0.000000000000002	chrI 13,197,634	C. elegans CLEC-109 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
21	nhr-10	B0280.8	n/a	chrIII 7,113,797	nhr-10 encodes a predicted nuclear hormone receptor diverged from nuclear hormone receptors in other phyla; its mRNA is expressed throughout development with possibly lower expression from the L4 larval to adult stages, and the protein is expressed in neuronal processes.
22	grl-2	T16G1.8	n/a	chrV 12,945,836	grl-2 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain; GRL-2 is expressed in neurons, amphid socket cells, and other cells; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
23	rmd-5	T23B3.3	n/a	chrI 6,711,598	C. elegans RMD-5 protein ; contains similarity to Xenopus laevis Protein FAM82C.; SW:Q5EAU9
24	C17H12.5	C17H12.5	n/a	chrIV 6,816,742	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
25	str-86	F59E11.14	n/a	chrV 8,983,013	C. elegans STR-86 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
26	F25B3.2	F25B3.2	n/a	chrV 9,578,510	contains similarity to Lactococcus lactis Oligopeptide transport system permease protein oppC.; SW:OPPC_LACLA
27	C48E7.8	C48E7.8	n/a	chrI 6,267,364	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
28	Y43F8C.9	Y43F8C.9	n/a	chrV 19,646,679	contains similarity to Dictyostelium discoideum Myb-like protein.; SW:P34127
29	tbx-35	ZK177.10	n/a	chrII 5,524,762	C. elegans TBX-35 protein; contains similarity to Pfam domain PF00907 T-box contains similarity to Interpro domains IPR008967 (p53-like transcription factor, DNA-binding), IPR001699 (Transcription factor, T-box)
30	F07E5.4	F07E5.4	n/a	chrII 2,050,852
31	tag-344	B0511.4	n/a	chrI 10,644,917	C. elegans TAG-344 protein; contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core)
32	snf-2	F55H12.1	n/a	chrI 8,873,592	C. elegans SNF-2 protein; contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domain IPR000175 (Sodium:neurotransmitter symporter)
33	F26F2.4	F26F2.4	n/a	chrV 20,565,244	contains similarity to Homo sapiens Laminin alpha-4 chain precursor; ENSEMBL:ENSP00000230538
34	scl-23	B0545.3	n/a	chrIV 88,065	C. elegans SCL-23 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related), IPR014044 (SCP-like extracellular)
35	sra-38	T21H8.3	n/a	chrX 13,898,963	C. elegans SRA-38 protein; contains similarity to Pfam domains PF02117 (C.elegans Sra family integral membrane protein) , PF03125 (C. elegans Sre G protein-coupled chemoreceptor) , PF02175 (C.elegans integral membrane protein Srb) contains similarity to Interpro domains IPR002184 (Serpentine beta receptor), IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR000344 (Nematode chemoreceptor, Sra)
36	F55C12.2	F55C12.2	n/a	chrII 5,877,311
37	Y51A2D.18	Y51A2D.18	n/a	chrV 18,484,174	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR001991 (Sodium:dicarboxylate symporter), IPR011701 (Major facilitator superfamily MFS-1), IPR005829 (Sugar transporter, conserved site), IPR005828 (General substrate transporter), IPR003663 (Sugar transporter), IPR016196 (MFS general substrate transporter)
38	T27A3.5	T27A3.5	n/a	chrI 6,101,032	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
39	F39E9.4	F39E9.4	n/a	chrII 3,284,898	F39E9.4 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F39E9.4 has no clear orthologs in other organisms.
40	T05C1.2	T05C1.2	n/a	chrII 4,482,363
41	Y48E1C.3	Y48E1C.3	n/a	chrII 13,439,410	contains similarity to Pfam domain PF00566 TBC domain contains similarity to Interpro domain IPR000195 (RabGAP/TBC)
42	F02H6.6	F02H6.6	n/a	chrIV 14,230,085	contains similarity to Interpro domain IPR000884 (Thrombospondin, type I)
43	F35B3.7	F35B3.7	n/a	chrX 17,038,997	contains similarity to Homo sapiens Leucine zipper putative tumor suppressor 2; ENSEMBL:ENSP00000359240
44	W05B5.1	W05B5.1	n/a	chrI 13,043,893	contains similarity to Saccharomyces cerevisiae Homolog of human WASP, proline-rich protein; SGD:YOR181W
45	F46B6.10	F46B6.10	n/a	chrV 9,801,717	contains similarity to Homo sapiens Hypothetical protein; TR:Q96QJ8
46	F47B3.4	F47B3.4	n/a	chrI 3,961,620	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR006077 (Vinculin/alpha-catenin), IPR003267 (Small proline-rich), IPR004296 (Protein of unknown function DUF236), IPR000694 (Proline-rich region), IPR001399 (VP6 blue-tongue virus inner capsid protein), IPR000079 (High mobility group protein HMG14 and HMG17)
47	Y32B12A.4	Y32B12A.4	n/a	chrV 16,494,950	contains similarity to Pfam domain PF06678 Protein of unknown function (DUF1179) contains similarity to Interpro domain IPR009564 (Protein of unknown function DUF1179)
48	ZK1098.6	ZK1098.6	n/a	chrIII 9,527,820	ZK1098.6 encodes a coiled-coil protein that is individually dispensable for viability and gross morphology in RNAi assays, but is cotranscribed with ZK1098.1 and thus might act in concert with it.
49	sri-66	F28B1.6	n/a	chrV 17,060,972	C. elegans SRI-66 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
50	C48B6.4	C48B6.4	n/a	chrI 6,890,348	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)