UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	pptr-1	W08G11.4	0	chrV 16,362,503	C. elegans PPTR-1 protein; contains similarity to Pfam domain PF01603 Protein phosphatase 2A regulatory B subunit (B56 family) contains similarity to Interpro domains IPR002554 (Protein phosphatase 2A, regulatory B subunit, B56), IPR016024 (Armadillo-type fold)
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	spe-4	ZK524.1	n/a	chrI 7,455,774	spe-4 encodes a transmembrane protein that is a divergent member of the presenilin family of proteins that have been implicated in early-onset Alzheimer's disease (OMIM:104300); spe-4 activity is required for proper formation and function of the fibrous body-membranous organelles that are asymmetrically localized to spermatids during spermatogeneis; spe-4 is also required for proper partitioning of tubulin as spermatids bud from the residual body; spe-4 localizes to the fibrous body-membranous organelles of developing spermatocytes and also to the spermatozoon cell body.
4	F13H8.9	F13H8.9	n/a	chrII 6,280,371	contains similarity to Pfam domain PF00266 Aminotransferase class-V contains similarity to Interpro domains IPR016454 (Cysteine desulphurase, NifS), IPR015422 (Pyridoxal phosphate-dependent transferase, major region, subdomain 2), IPR015424 (Pyridoxal phosphate-dependent transferase, major region), IPR000192 (Aminotransferase, class V/Cysteine desulphurase), IPR015421 (Pyridoxal phosphate-dependent transferase, major region, subdomain 1)
5	tsp-18	F59G1.2	n/a	chrII 5,905,416	C. elegans TSP-18 protein; contains similarity to Interpro domain IPR008952 (Tetraspanin)
6	W03G9.5	W03G9.5	n/a	chrI 4,969,127	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
7	D1065.3	D1065.3	n/a	chrV 4,060,947	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
8	T07D3.2	T07D3.2	n/a	chrII 902,779	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
9	R107.2	R107.2	n/a	chrIII 9,044,850	contains similarity to Pfam domain PF01256 Carbohydrate kinase contains similarity to Interpro domain IPR000631 (Carbohydrate kinase)
10	D2045.7	D2045.7	n/a	chrIII 10,480,900	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
11	F21F3.3	F21F3.3	n/a	chrI 4,902,556	contains similarity to Pfam domain PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family contains similarity to Interpro domains IPR007269 (Isoprenylcysteine carboxyl methyltransferase), IPR001958 (Tetracycline resistance protein, TetA)
12	W10D9.2	W10D9.2	n/a	chrII 451,150	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
13	F58D12.3	F58D12.3	n/a	chrV 14,062,015	contains similarity to Interpro domain IPR009091 (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II)
14	srab-6	C36C5.10	n/a	chrV 3,151,224	C. elegans SRAB-6 protein ;
15	srx-62	K09D9.10	n/a	chrV 3,995,344	C. elegans SRX-62 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
16	E01G4.1	E01G4.1	n/a	chrII 13,445,298	contains similarity to Interpro domain IPR000195 (RabGAP/TBC)
17	T10B9.9	T10B9.9	n/a	chrII 9,775,421	contains similarity to Avian adenovirus gal1 Orf2 protein.; TR:Q64786
18	C18D11.1	C18D11.1	n/a	chrIII 11,818,072	contains similarity to Sporobolus stapfianus Hypothetical protein.; TR:O04820
19	C33A11.2	C33A11.2	n/a	chrX 15,367,917	contains similarity to Drosophila melanogaster Flybase gene name is CG4025-PA;; FLYBASE:CG4025
20	Y62H9A.10	Y62H9A.10	n/a	chrX 11,901,221	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
21	ceh-27	F46F3.1	n/a	chrV 11,663,161	ceh-27 encodes a homeodomain protein of the NK-2 class that contains Drosophila scarecrow and human NKX-2 (OMIM:606727); CEH-27 activity is essential for embryogenesis and appears to be required for maintaining hypodermal integrity during movement as embryos lacking CEH-27 burst at a breach in the ventral hypodermis upon commencement of muscle contractions; CEH-27 expression is first detected in the ~100-cell embryo in what appear to be MS-derived cells while in later embryos expression is seen in a number of cells in the anterior head region.
22	K09E2.2	K09E2.2	n/a	chrX 8,677,297
23	set-8	F02D10.7	n/a	chrX 13,447,398	set-8 encodes a protein with an N-terminal RING-type zinc finger, and a C-terminal SET domain; SET-8 has no non-nematode orthologs, but is paralogous to MES-4; SET-8 is required for a normally low spontaneous somatic mutation rate; otherwise, neither set-8(tm2113) nor set-8(RNAi) have any obvious phenotypes.
24	srbc-82	C31A11.4	n/a	chrV 16,301,000	C. elegans SRBC-82 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
25	C01B4.6	C01B4.6	n/a	chrV 2,501,738	contains similarity to Pfam domain PF01263 Aldose 1-epimerase contains similarity to Interpro domains IPR008183 (Aldose 1-epimerase), IPR015443 (Aldose-1-epimerase), IPR011013 (Glycoside hydrolase-type carbohydrate-binding), IPR014718 (Glycoside hydrolase-type carbohydrate-binding, subgroup)
26	F11A5.4	F11A5.4	n/a	chrV 16,195,957	contains similarity to Pfam domains PF00071 (Ras family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR002041 (Ran GTPase), IPR003577 (Ras small GTPase, Ras type), IPR013684 (Miro-like), IPR003578 (Ras small GTPase, Rho type), IPR005225 (Small GTP-binding protein), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR006688 (ADP-ribosylation factor), IPR013753 (Ras)
27	T02H6.5	T02H6.5	n/a	chrII 687,130	contains similarity to Pfam domains PF07735 (F-box associated) , PF00646 (F-box domain) contains similarity to Interpro domains IPR001810 (Cyclin-like F-box), IPR012885 (F-box associated type 2)
28	T11F1.3	T11F1.3	n/a	chrII 2,955,703
29	H25P06.4	H25P06.4	n/a	chrI 11,307,702	contains similarity to Pfam domain PF05699 hAT family dimerisation domain contains similarity to Interpro domains IPR001300 (Peptidase C2, calpain), IPR008906 (HAT dimerisation)
30	F28C6.5	F28C6.5	n/a	chrII 8,599,990	contains similarity to Mus musculus Activity-dependent neuroprotector (Activity-dependent neuroprotectivesprotein).; SW:ADNP_MOUSE
31	C24G7.1	C24G7.1	n/a	chrI 4,110,897	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
32	sri-47	F22E5.4	n/a	chrII 2,657,583	C. elegans SRI-47 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
33	B0034.2	B0034.2	n/a	chrII 5,944,245
34	T24C2.3	T24C2.3	n/a	chrX 14,544,021	contains similarity to Arabidopsis thaliana F25I16.10 protein.; TR:Q9FZ78
35	Y116A8A.4	Y116A8A.4	n/a	chrIV 16,823,640	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
36	str-14	T08G3.2	n/a	chrV 16,454,252	C. elegans STR-14 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
37	C36B7.2	C36B7.2	n/a	chrX 7,106,598	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
38	mfb-1	DY3.6	n/a	chrI 8,782,569	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
39	C50F2.1	C50F2.1	n/a	chrI 3,893,803	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
40	Y37D8A.22	Y37D8A.22	n/a	chrIII 12,937,773	contains similarity to Danio rerio Transmembrane protein 49.; SW:Q6NYY9
41	scl-20	ZK384.2	n/a	chrV 18,733,634	C. elegans SCL-20 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
42	F44D12.10	F44D12.10	n/a	chrIV 10,036,818	contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR007087 (Zinc finger, C2H2-type)
43	R10F2.6	R10F2.6	n/a	chrIII 2,940,362	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
44	C31B8.2	C31B8.2	n/a	chrV 2,917,112	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
45	C36B7.3	C36B7.3	n/a	chrX 7,101,897
46	K09E3.5	K09E3.5	n/a	chrX 17,109,938	contains similarity to Pfam domain PF03353 DUF278 contains similarity to Interpro domain IPR005020 (Protein of unknown function DUF278)
47	ZK1055.5	ZK1055.5	n/a	chrV 6,582,618	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
48	sri-39	F33H12.2	n/a	chrII 2,588,572	C. elegans SRI-39 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
49	Y48A6B.1	Y48A6B.1	n/a	chrIII 10,993,565	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
50	C17C3.9	C17C3.9	n/a	chrII 5,531,799