UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	W06F12.3	W06F12.3	2e-176	chrIII 13,735,661	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	C15H11.1	C15H11.1	n/a	chrV 14,394,129	contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor, N-terminal), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
4	kin-26	T06C10.6	0.001	chrIV 7,876,748	C. elegans KIN-26 protein; contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
5	T02H6.4	T02H6.4	n/a	chrII 690,572	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
6	tba-6	F32H2.9	n/a	chrI 8,996,289	C. elegans TBA-6 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin/FtsZ family, C-terminal domain) contains similarity to Interpro domains IPR002454 (Gamma tubulin), IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR000158 (Cell division protein FtsZ, N-terminal), IPR008280 (Tubulin/FtsZ, C-terminal)
7	F38A5.8	F38A5.8	n/a	chrIV 6,600,170
8	lips-2	C04B4.3	n/a	chrX 12,286,461	C. elegans LIPS-2 protein; contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)
9	H32C10.3	H32C10.3	n/a	chrIV 5,918,692	contains similarity to Pfam domains PF00023 (Ankyrin repeat) (5), PF01529 (DHHC zinc finger domain) contains similarity to Interpro domains IPR001594 (Zinc finger, DHHC-type), IPR002110 (Ankyrin)
10	srv-12	T04B2.4	n/a	chrIV 10,052,440	C. elegans SRV-12 protein ;
11	C17C3.11	C17C3.11	0.006	chrII 5,538,392	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
12	K03H1.9	K03H1.9	n/a	chrIII 9,941,014	contains similarity to Homo sapiens DAN15 protein; TR:Q99491
13	C08E8.3	C08E8.3	n/a	chrV 18,351,418	contains similarity to Clostridium perfringens Probable Ser-type protease.; TR:Q8XHC4
14	Y57G11C.14	Y57G11C.14	n/a	chrIV 14,800,135	contains similarity to Saccharomyces cerevisiae Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p; SGD:YLR467W
15	M28.9	M28.9	n/a	chrII 10,641,581	contains similarity to Homo sapiens hypothetical protein; VG:OTTHUMP00000024599
16	C24D10.1	C24D10.1	n/a	chrIV 5,167,373	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
17	C48B6.4	C48B6.4	n/a	chrI 6,890,348	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
18	rmd-5	T23B3.3	n/a	chrI 6,711,598	C. elegans RMD-5 protein ; contains similarity to Xenopus laevis Protein FAM82C.; SW:Q5EAU9
19	try-7	ZC581.6	n/a	chrI 6,642,054	C. elegans TRY-7 protein; contains similarity to Pfam domains PF00089 (Trypsin) , PF03761 (Domain of unknown function (DUF316)) contains similarity to Interpro domains IPR001314 (Peptidase S1A, chymotrypsin), IPR001254 (Peptidase S1 and S6, chymotrypsin/Hap), IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
20	Y116A8A.7	Y116A8A.7	n/a	chrIV 16,830,442	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
21	scrm-8	K08D10.7	n/a	chrIV 4,165,432	scrm-8 encodes a putative phospholipid scramblase required for normally short lifespan; SCRM-8 is homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1).
22	Y43F8C.9	Y43F8C.9	n/a	chrV 19,646,679	contains similarity to Dictyostelium discoideum Myb-like protein.; SW:P34127
23	C04G2.2	C04G2.2	4.0000000000000004e-39	chrIV 10,091,506	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
24	D2062.6	D2062.6	n/a	chrII 2,619,582	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
25	C18H7.7	C18H7.7	n/a	chrIV 596,081
26	F47B3.4	F47B3.4	n/a	chrI 3,961,620	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR006077 (Vinculin/alpha-catenin), IPR003267 (Small proline-rich), IPR004296 (Protein of unknown function DUF236), IPR000694 (Proline-rich region), IPR001399 (VP6 blue-tongue virus inner capsid protein), IPR000079 (High mobility group protein HMG14 and HMG17)
27	H32C10.1	H32C10.1	n/a	chrIV 5,935,928	contains similarity to Interpro domains IPR006353 (HAD-superfamily hydrolase, subfamily IIA, CECR5), IPR006357 (HAD-superfamily hydrolase, subfamily IIA)
28	srsx-37	M01B2.7	n/a	chrV 15,258,341	C. elegans SRSX-37 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
29	T08H10.1	T08H10.1	n/a	chrV 4,484,972	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
30	W01D2.3	W01D2.3	n/a	chrII 14,802,515	contains similarity to Haemophilus influenzae Electron transport complex protein rnfD.; SW:RNFD_HAEIN
31	F41G3.5	F41G3.5	1e-27	chrII 6,748,034	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
32	Y40H4A.2	Y40H4A.2	n/a	chrV 14,584,349	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
33	trf-1	F45G2.6	n/a	chrIII 13,431,808	The trf-1 gene encodes a protein with a meprin-associated Traf homology (MATH) domain that may be involved in apoptosis.
34	F28A10.9	F28A10.9	n/a	chrII 834,544	contains similarity to Pfam domain PF06828 Fukutin-related contains similarity to Interpro domain IPR009644 (Fukutin-related)
35	ech-3	F43H9.1	n/a	chrV 8,022,781	C. elegans ECH-3 protein; contains similarity to Pfam domain PF00378 Enoyl-CoA hydratase/isomerase family contains similarity to Interpro domain IPR001753 (Crotonase, core)
36	scrm-6	F46A8.10	n/a	chrI 11,254,608	scrm-6 encodes a putative phospholipid scramblase homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1); scrm-6(RNAi) animals have no obvious phenotype.
37	C09B9.4	C09B9.4	3e-22	chrIV 5,032,484	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
38	D2062.7	D2062.7	n/a	chrII 2,617,140
39	M110.7	M110.7	n/a	chrII 8,235,210	contains similarity to Pfam domain PF01237 Oxysterol-binding protein contains similarity to Interpro domain IPR000648 (Oxysterol-binding protein)
40	C18E9.8	C18E9.8	n/a	chrII 8,986,939	C18E9.8 is orthologous to the human gene JOINED TO JAZF1 (JJAZ1; OMIM:606245), which when mutated leads to disease.
41	clec-261	ZC15.6	n/a	chrV 20,287,601	C. elegans CLEC-261 protein; contains similarity to Interpro domains IPR000817 (Prion protein), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
42	C08G5.2	C08G5.2	n/a	chrII 740,228
43	F26A1.4	F26A1.4	3e-17	chrIII 4,818,558	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core)
44	C46E10.1	C46E10.1	n/a	chrII 3,725,048	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domain IPR005514 (Protein of unknown function DUF316)
45	B0511.11	B0511.11	n/a	chrI 10,649,379
46	B0513.6	B0513.6	n/a	chrIV 13,855,821	contains similarity to Pfam domain PF04435 Domain of unknown function (DUF545) contains similarity to Interpro domain IPR006570 (SPK)
47	fbxa-202	T28C12.3	n/a	chrV 6,328,019	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
48	R07C3.4	R07C3.4	n/a	chrII 934,987	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
49	C32D5.4	C32D5.4	n/a	chrII 6,322,171
50	C27B7.6	C27B7.6	n/a	chrIV 8,904,670	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)