UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	W05B2.4	W05B2.4	0	chrIII 10,975,818	contains similarity to Pfam domain PF08393 Dynein heavy chain, N-terminal region 2 contains similarity to Interpro domains IPR011010 (DNA breaking-rejoining enzyme, catalytic core), IPR013602 (Dynein heavy chain, N-terminal region 2)
2	K07E1.1	K07E1.1	n/a	chrII 4,551,523	contains similarity to Pfam domain PF03079 ARD/ARD' family contains similarity to Interpro domains IPR011051 (Cupin, RmlC-type), IPR004313 (Acireductone dioxygenase, ARD), IPR014710 (RmlC-like jelly roll fold)
3	srg-24	Y25C1A.12	n/a	chrII 3,099,519	C. elegans SRG-24 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
4	nhr-273	T12C9.1	n/a	chrII 4,436,140	C. elegans NHR-273 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
5	F58A4.2	F58A4.2	n/a	chrIII 9,600,293	contains similarity to Musca domestica Hexamerin (Fragment).; TR:Q9U6B2
6	scl-27	ZK6.3	n/a	chrV 400,930	C. elegans SCL-27 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR001283 (Allergen V5/Tpx-1 related)
7	C50F4.8	C50F4.8	n/a	chrV 9,518,171
8	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
9	nhr-108	F35E8.12	n/a	chrV 15,923,731	nhr-108 encodes a nuclear receptor that is most highly conserved amongst nematode species.
10	ZK218.1	ZK218.1	n/a	chrV 17,092,954	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
11	ugt-32	F47C10.6	n/a	chrV 3,842,918	C. elegans UGT-32 protein; contains similarity to Pfam domain PF00201 UDP-glucoronosyl and UDP-glucosyl transferase contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
12	F40F8.3	F40F8.3	n/a	chrII 11,129,630	contains similarity to Homo sapiens 17 kDa protein; ENSEMBL:ENSP00000373249
13	rnp-8	R119.7	n/a	chrI 366,516	C. elegans RNP-8 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA recognition motif, RNP-1)
14	srz-54	Y102A5C.25	n/a	chrV 16,981,243	C. elegans SRZ-54 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
15	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
16	T04A11.1	T04A11.1	n/a	chrIV 12,476,146	contains similarity to Pfam domain PF02567 Phenazine biosynthesis-like protein contains similarity to Interpro domain IPR003719 (Phenazine biosynthesis PhzC/PhzF protein)
17	nas-20	T11F9.3	n/a	chrV 11,471,595	nas-20 encodes an astacin-like metalloprotease.
18	T12D8.5	T12D8.5	n/a	chrIII 13,626,155	contains similarity to Treponema pallidum Nuclease sbcCD subunit C.; SW:SBCC_TREPA
19	F19D8.2	F19D8.2	n/a	chrX 13,835,397	contains similarity to Homo sapiens Splice isoform 1 of Q9UMN6 Myeloid/lymphoid or mixed-lineage leukemia protein 4; ENSEMBL:ENSP00000222270
20	clec-60	ZK666.6	n/a	chrII 10,480,905	clec-60 encodes a C-type lectin protein with no obvious non-nematode orthologs required for normal resistance to infection with Microbacterium nematophilum; clec-60 transcription is induced 6.6-fold by infection with M. nematophilum, making it one of the most strongly infection-responsive genes (second only to tts-1), while not being induced by other pathogens; CLEC-60 is expressed throughout the larval intestine, continuing adult expression primarily in the posterior intestinal cells int8 and int9; CLEC-60 contains an N-terminal von Willebrand factor type A domain and a C-terminal C-type lectin domain; CLEC-60 has no obvious function in mass RNAi assays, and is dispensable for viability.
21	F33E11.2	F33E11.2	n/a	chrV 298,304	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR003980 (Histamine H3 receptor)
22	F53A9.8	F53A9.8	n/a	chrX 8,718,676	contains similarity to Plasmodium chabaudi Pc-fam-3 protein putative (Fragment).; TR:Q4XGP3
23	sms-2	F53H8.4	n/a	chrX 946,855	C. elegans SMS-2 protein ; contains similarity to Aedes aegypti Spingomyelin synthetase.; TR:Q17C34
24	K08F4.3	K08F4.3	n/a	chrIV 10,129,732	contains similarity to Pfam domain PF05753 Translocon-associated protein beta (TRAPB) contains similarity to Interpro domain IPR008856 (Translocon-associated beta)
25	C18D4.4	C18D4.4	n/a	chrV 17,530,973	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
26	inx-9	ZK792.3	n/a	chrIV 11,677,349	inx-9 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions; although the precise role of INX-9 in C. elegans development and/or behavior is not yet known, INX-9 may play a role in gonad or germline development, as INX-9 expression is detected solely in the sheath cells of the somatic gonad and particularly, the sheath cells in contact with proximal oocytes.
27	C16C8.11	C16C8.11	n/a	chrII 3,454,183	contains similarity to Pfam domain PF00240 Ubiquitin family contains similarity to Interpro domain IPR000626 (Ubiquitin)
28	F14F9.4	F14F9.4	n/a	chrV 5,134,905	contains similarity to Interpro domain IPR002867 (Zinc finger, C6HC-type)
29	W03D2.6	W03D2.6	n/a	chrIV 4,057,478
30	W02D9.5	W02D9.5	n/a	chrI 12,561,291	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
31	col-119	C53B4.5	n/a	chrIV 8,979,295	C. elegans COL-119 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
32	F57C2.3	F57C2.3	n/a	chrII 14,524,512	contains similarity to Homo sapiens Hypothetical protein; ENSEMBL:ENSP00000265391
33	Y18D10A.23	Y18D10A.23	n/a	chrI 12,868,302	contains similarity to Pfam domain PF01490 Transmembrane amino acid transporter protein contains similarity to Interpro domains IPR002091 (Aromatic amino acid permease), IPR013057 (Amino acid transporter, transmembrane), IPR006634 (TRAM, LAG1 and CLN8 homology)
34	col-40	T13B5.4	n/a	chrII 1,105,772	col-40 encodes a cuticle collagen protein that belongs to the col-6 cuticle collagen family; col-40 transcript is present in L1 larvae and at the L2d-dauer molt.
35	clec-148	F40G9.10	n/a	chrIII 175,220	C. elegans CLEC-148 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR002352 (Eosinophil major basic protein), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
36	syp-2	C24G6.1	n/a	chrV 5,537,191	C. elegans SYP-2 protein ;
37	F47C12.1	F47C12.1	n/a	chrIV 4,001,937	contains similarity to Pfam domains PF00008 (EGF-like domain) (4), PF00754 (F5/8 type C domain) , PF07645 (Calcium binding EGF domain) (2), PF07699 (GCC2 and GCC3) (3), PF00431 (CUB domain) , PF07974 (EGF-like domain) , PF02494 (HYR domain) (2), PF00084 (Sushi domain (SCR repeat)) (6)contains similarity to Interpro domains IPR001438 (EGF-like, type 2), IPR000742 (EGF-like, type 3), IPR003410 (Hyalin), IPR000436 (Sushi/SCR/CCP), IPR006209 (EGF-like), IPR000152 (Aspartic acid and asparagine hydroxylation site), IPR006210 (EGF), IPR002049 (EGF-like, laminin), IPR008979 (Galactose-binding like), IPR000859 (CUB), IPR011641 (GCC2 and GCC3), IPR001881 (EGF-like calcium-binding), IPR016060 (Complement control module), IPR009030 (Growth factor, receptor), IPR013032 (EGF-like region, conserved site), IPR000421 (Coagulation factor 5/8 type, C-terminal), IPR013111 (EGF, extracellular), IPR013091 (EGF calcium-binding)
38	tag-68	F37D6.6	n/a	chrI 10,503,512	C. elegans TAG-68 protein; contains similarity to Pfam domains PF03166 (MH2 domain) , PF03165 (MH1 domain) contains similarity to Interpro domains IPR013019 (MAD homology, MH1), IPR008984 (SMAD/FHA domain), IPR001132 (SMAD domain, Dwarfin-type), IPR017855 (SMAD domain-like), IPR013790 (Dwarfin), IPR003619 (MAD homology 1, Dwarfin-type)
39	K07A1.1	K07A1.1	n/a	chrI 9,583,089	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IBJ6
40	F52E1.5	F52E1.5	n/a	chrV 8,381,526	contains similarity to Danio rerio Coiled-coil domain-containing protein 80 precursor.; SW:Q90X49
41	C16A11.6	C16A11.6	n/a	chrII 4,237,141
42	col-51	T28F2.8	n/a	chrI 3,654,613	col-51 encodes a cuticle collagen.
43	VC27A7L.1	VC27A7L.1	n/a	chrV 12,165,914	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
44	F45E4.5	F45E4.5	n/a	chrIV 7,628,626
45	lov-1	ZK945.9	n/a	chrII 10,115,543	lov-1 encodes an ortholog of human PKD1 (OMIM:601313; mutated in autosomal dominant polycystic kidney disease) that is expressed in the ciliated sensory endings of three types of male-specific neurons and that is required for two aspects of male mating behavior: response to hermaphrodite contact and vulva location; LOV-1 acts with PKD-2; EGL-44 and EGL-46 regulate cell-specific expression of lov-1 and pkd-2 to specify the behavioral function of the HOB neuron; in vitro, LOV-1 interacts, via its conserved PLAT domain, with the N-terminus of ATP-2, the beta subunit of ATP synthase that also localizes to cilia, suggesting that ATP synthase may play a role in C. elegans polycystin signaling.
46	M02B7.1	M02B7.1	n/a	chrIV 3,806,054
47	K08H2.7	K08H2.7	n/a	chrX 13,247,766	contains similarity to Synechocystis sp Probable glycogen synthase 2 (EC 2.4.1.21) (Starch [bacterialsglycogen] synthase 2).; SW:GLG2_SYNY3
48	C46A5.5	C46A5.5	n/a	chrIV 7,758,797
49	Y40H7A.10	Y40H7A.10	n/a	chrIV 15,212,835	contains similarity to Pfam domains PF08246 (Cathepsin propeptide inhibitor domain (I29)) , PF00112 (Papain family cysteine protease) contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000169 (Peptidase, cysteine peptidase active site), IPR013201 (Proteinase inhibitor I29, cathepsin propeptide), IPR000668 (Peptidase C1A, papain C-terminal)
50	srj-14	C03G6.3	n/a	chrV 7,371,464	C. elegans SRJ-14 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)