UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	W04B5.2	W04B5.2	0	chrIII 2,425,901	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR005386 (EDG-8 sphingosine 1-phosphate receptor)
2	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
3	pqn-62	T03G11.1	n/a	chrX 5,200,980	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
4	C47C12.2	C47C12.2	n/a	chrX 7,754,107
5	F41C6.4	F41C6.4	n/a	chrX 6,874,202
6	srt-61	T27C10.1	n/a	chrI 10,905,441	C. elegans SRT-61 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
7	srw-55	T05G11.6	n/a	chrV 15,939,538	C. elegans SRW-55 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300)
8	F10A3.7	F10A3.7	n/a	chrV 16,156,140	contains similarity to Pfam domain PF01461 (7TM chemoreceptor)
9	cids-1	C02F5.4	n/a	chrIII 8,245,008	C. elegans CIDS-1 protein; contains similarity to Pfam domain PF04818 Protein of unknown function, DUF618 contains similarity to Interpro domains IPR006569 (Regulation of nuclear pre-mRNA protein), IPR006903 (Protein of unknown function DUF618), IPR008942 (ENTH/VHS)
10	D1044.4	D1044.4	n/a	chrIII 5,521,831
11	ZC376.6	ZC376.6	n/a	chrV 14,188,934	contains similarity to Interpro domain IPR001028 (Glycoprotein phospholipase D)
12	srb-3	C27D6.8	n/a	chrII 5,166,058	C. elegans SRB-3 protein; contains similarity to Pfam domains PF02117 (C.elegans Sra family integral membrane protein) , PF02175 (C.elegans integral membrane protein Srb) contains similarity to Interpro domains IPR002184 (Serpentine beta receptor), IPR000344 (Nematode chemoreceptor, Sra)
13	srg-22	Y25C1A.10	n/a	chrII 3,092,472	C. elegans SRG-22 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
14	F20D1.7	F20D1.7	n/a	chrX 14,989,294	contains similarity to Pfam domain PF00560 Leucine Rich Repeat contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR013783 (Immunoglobulin-like fold), IPR003591 (Leucine-rich repeat, typical subtype), IPR007110 (Immunoglobulin-like)
15	tax-2	F36F2.5	n/a	chrI 9,023,241	tax-2 is orthologous to the human gene ROD PHOTORECEPTOR CNG-CHANNEL BETA SUBUNIT (CNGB1; OMIM:600724), which when mutated leads to disease.
16	twk-12	F29F11.4	n/a	chrV 10,669,197	twk-12 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains; as loss of TWK-12 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of TWK-12 in C. elegans development and/or behavior is not yet known; TWK-12 may, however, function redundantly with other TWK channels; the TWK-12 expression pattern has not been determined.
17	ZC266.1	ZC266.1	n/a	chrV 4,700,209
18	str-18	T23D5.6	n/a	chrV 15,741,213	C. elegans STR-18 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
19	T27A10.5	T27A10.5	n/a	chrX 3,573,294
20	T17A3.10	T17A3.10	n/a	chrIII 155,573	contains similarity to Interpro domain IPR007110 (Immunoglobulin-like)
21	clec-227	F08H9.5	n/a	chrV 14,473,432	C. elegans CLEC-227 protein; contains similarity to Pfam domains PF00431 (CUB domain) (2), PF00059 (Lectin C-type domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
22	srg-16	F15A4.4	n/a	chrII 12,468,465	C. elegans SRG-16 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
23	ZK856.11	ZK856.11	n/a	chrV 10,204,273	contains similarity to Pfam domain PF01176 Translation initiation factor 1A / IF-1 contains similarity to Interpro domains IPR016027 (Nucleic acid-binding, OB-fold-like), IPR012340 (Nucleic acid-binding, OB-fold), IPR006196 (S1, IF1 type), IPR001253 (Eukaryotic initiation factor 1A (eIF-1A))
24	str-55	F26D2.7	n/a	chrV 16,416,377	C. elegans STR-55 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
25	C02B8.5	C02B8.5	n/a	chrX 8,123,026	C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR; CG2114) of D. melanogaster; it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12).
26	srd-51	F15A2.3	n/a	chrX 13,483,631	C. elegans SRD-51 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000276 (GPCR, rhodopsin-like)
27	srh-3	K04F1.5	n/a	chrV 1,683,835	C. elegans SRH-3 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001024 (Lipoxygenase, LH2)
28	fbxb-108	F08D12.6	n/a	chrII 2,766,099	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
29	srx-7	C14C6.1	n/a	chrV 561,828	C. elegans SRX-7 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR002651 (Protein of unknown function DUF32), IPR000276 (GPCR, rhodopsin-like)
30	F52E1.3	F52E1.3	n/a	chrV 8,395,551
31	srw-87	F57G8.4	n/a	chrV 16,337,424	C. elegans SRW-87 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
32	lgc-9	C04C3.2	n/a	chrIV 3,417,455	C. elegans LGC-9 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
33	F57B1.1	F57B1.1	n/a	chrV 13,194,570	contains similarity to Pfam domain PF04789 Protein of unknown function (DUF621) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR006874 (Protein of unknown function DUF621)
34	T26E4.1	T26E4.1	n/a	chrV 15,780,361	contains similarity to Pfam domain PF01030 (Receptor L domain)
35	C14E2.5	C14E2.5	n/a	chrX 1,824,473
36	ZK721.3	ZK721.3	n/a	chrX 8,785,606
37	C13A2.2	C13A2.2	n/a	chrV 7,286,774	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
38	srbc-26	F40D4.7	n/a	chrV 17,172,551	C. elegans SRBC-26 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
39	ZK353.5	ZK353.5	n/a	chrIII 8,394,543
40	clec-143	ZK673.9	n/a	chrII 10,469,224	C. elegans CLEC-143 protein; contains similarity to Pfam domain PF00092 von Willebrand factor type A domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR000158 (Cell division protein FtsZ, N-terminal), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin), IPR002035 (von Willebrand factor, type A)
41	D1044.5	D1044.5	n/a	chrIII 5,524,267
42	T27E7.5	T27E7.5	n/a	chrIV 14,537,655	contains similarity to Bacillus stearothermophilus D-alanyl-D-alanine carboxypeptidase precursor (EC 3.4.16.4) (DD-speptidase) (DD-carboxypeptidase) (CPase) (PBP5).; SW:DACA_BACST
43	K04F1.10	K04F1.10	n/a	chrV 1,663,542	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR000494 (EGF receptor, L domain)
44	B0416.3	B0416.3	n/a	chrX 9,292,441
45	xnp-1	B0041.7	n/a	chrI 4,668,742	xnp-1 encodes an ATP-dependent DNA helicase of the SNF2 family that is orthologous to human XNP/ATR-X, which is associated with a number of X-linked mental retardation syndromes; in C. elegans, xnp-1 activity is required at high temperatures for embryogenesis, somatic gonad development, fertility, and vulval morphogenesis; in addition, animals doubly mutant for xnp-1 and lin-35/Rb, hpl-2/HP1, or nucleosome remodelling and histone deacetylase (NuRD) complex members such as lin-53 and let-418, display larval arrest with growth cessation but continued cell proliferation; xnp-1 is also required, with lin-35/Rb and hpl-2/HP1, for proper regulation of transgene expression; xnp-1 mRNA, detectable in embryos and the germline by in situ hybridization, is expressed at highest levels in embryos with decreasing levels seen in successive larval stages; xnp-1 transcriptional reporter fusions exhibit strong expression beginning at mid-embryogenesis but fading by embryonic morphogenesis; at hatching, expression is observed in all dividing cells including the P lineage, and at later larval stages expression is observed in the vulval precursor cells.
46	gcy-17	W03F11.2	n/a	chrI 2,228,250	gcy-17 encodes a predicted guanylate cyclase.
47	C46C2.3	C46C2.3	n/a	chrIV 9,226,726	contains similarity to Tropheryma whipplei DNA repair protein RecN.; TR:Q83NU4
48	F54B11.8	F54B11.8	n/a	chrX 13,602,980	contains similarity to Silene gallica Reverse transcriptase (Fragment).; TR:Q8W3T3
49	F16G10.14	F16G10.14	n/a	chrII 2,398,093	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
50	ZC132.8	ZC132.8	n/a	chrV 4,316,012