UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	col-117	T28C6.4	1e-33	chrIV 8,823,550	C. elegans COL-117 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
2	col-10	B0222.8	n/a	chrV 9,164,776	col-10 encodes a collagen protein; expressed exclusively in hypodermal cells
3	col-144	B0222.6	n/a	chrV 9,160,126	C. elegans COL-144 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
4	ram-2	F38A3.2	0.00002	chrII 11,016,138	ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants.
5	col-125	C29F4.1	2e-32	chrIV 11,225,985	C. elegans COL-125 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
6	fipr-20	H14A12.6	n/a	chrIII 7,462,256	C. elegans FIPR-20 protein ;
7	F55G11.8	F55G11.8	n/a	chrIV 12,963,684	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domain IPR003366 (CUB-like region)
8	F48G7.8	F48G7.8	n/a	chrV 627,379	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
9	col-180	C44C10.1	0.0000006	chrX 11,711,753	C. elegans COL-180 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
10	T06E4.9	T06E4.9	n/a	chrV 9,620,523	contains similarity to Interpro domain IPR000694 (Proline-rich region)
11	F35A5.1	F35A5.1	n/a	chrX 3,811,921	The F35A5.1 gene encodes a homolog of human FMR2, which when mutated leads to fragile site mental retardation, type 2 (OMIM:309548).
12	C25D7.5	C25D7.5	n/a	chrV 15,054,998	contains similarity to Pfam domain PF00753 (Metallo-beta-lactamase superfamily)
13	C52A10.1	C52A10.1	n/a	chrV 5,232,169	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
14	pqn-5	C03A7.4	n/a	chrV 5,159,245	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
15	F07D3.3	F07D3.3	n/a	chrV 9,461,634	contains similarity to Listeria monocytogenes Shikimate 5-dehydrogenase (EC 1.1.1.25).; SW:AROE_LISMO
16	F32B5.1	F32B5.1	n/a	chrI 2,701,252	contains similarity to Pfam domains PF02807 (ATP:guanido phosphotransferase, N-terminal domain) , PF00217 (ATP:guanido phosphotransferase, C-terminal catalytic domain) contains similarity to Interpro domains IPR000749 (ATP:guanido phosphotransferase), IPR014746 (Glutamine synthetase/guanido kinase, catalytic region)
17	csp-3	Y47H9C.6	n/a	chrI 11,888,911	csp-3 encodes a protein that is homologous to the C-terminal domain of caspase-like cysteine proteases; unlike other caspases, CSP-3 does not contain a middle or N-terminal domain, and thus may either function in concert with the middle domains of other caspases or may play a regulatory (dominant negative) role in caspase activation; as loss of csp-3 activity via large-scale RNAi does not result in any obvious abnormalities, the precise role of CSP-3 in C. elegans development and/or behavior is not yet known.
18	col-126	F54D1.2	n/a	chrIV 11,263,837	C. elegans COL-126 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR000681 (Adrenergic receptor, beta 3), IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
19	Y75B8A.4	Y75B8A.4	n/a	chrIII 12,110,492	contains similarity to Pfam domains PF07726 (ATPase family associated with various cellular activities (AAA)) , PF00004 (ATPase family associated with various cellular activities (AAA)) , PF05362 (Lon protease (S16) C-terminal proteolytic domain) , PF07728 (ATPase family associated with various cellular activities (AAA)) contains similarity to Interpro domains IPR003959 (AAA ATPase, core), IPR000767 (Disease resistance protein), IPR011704 (ATPase associated with various cellular activities, AAA-5), IPR011703 (ATPase associated with various cellular activities, AAA-3), IPR004815 (Peptidase S16, ATP-dependent protease La), IPR008269 (Peptidase S16, lon C-terminal), IPR003111 (Peptidase S16, lon N-terminal), IPR003593 (AAA+ ATPase, core), IPR001984 (Peptidase S16, Lon protease)
20	T06E4.10	T06E4.10	n/a	chrV 9,618,599	T06E4.10 encodes an uncharacterized protein that is proline- and alanine-rich and contains a predicted signal sequence; as loss of T06E4.10 results in no obvious defects, the precise role of its gene product in C. elegans development and/or behavior is not yet known.
21	T20B3.1	T20B3.1	n/a	chrV 16,818,064	contains similarity to Pfam domain PF00755 Choline/Carnitine o-acyltransferase contains similarity to Interpro domain IPR000542 (Acyltransferase ChoActase/COT/CPT)
22	ZK84.1	ZK84.1	n/a	chrII 6,021,961	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR003980 (Histamine H3 receptor)
23	C45B2.2	C45B2.2	n/a	chrX 6,084,923
24	F40D4.13	F40D4.13	n/a	chrV 17,156,612	contains similarity to Homo sapiens Splice isoform 1 of P45378 Troponin T, fast skeletal muscle isoforms; SW:P45378
25	F55G11.6	F55G11.6	n/a	chrIV 12,958,781	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domain IPR003366 (CUB-like region)
26	nspb-7	C01G12.2	n/a	chrII 14,578,358	C. elegans NSPB-7 protein ;
27	col-130	F08G5.4	n/a	chrIV 12,427,979	C. elegans COL-130 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
28	dod-17	K10D11.1	n/a	chrIV 12,977,287	C. elegans DOD-17 protein; contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domain IPR003366 (CUB-like region)
29	ZC247.1	ZC247.1	n/a	chrI 10,271,766	contains similarity to Drosophila melanogaster Flybase gene name is CG32377-PA;; FLYBASE:CG32377
30	col-176	ZC373.7	n/a	chrX 10,078,040	C. elegans COL-176 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
31	C55A6.4	C55A6.4	n/a	chrV 11,517,187	contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR002424 (Insect alcohol dehydrogenase family), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)
32	K08D8.5	K08D8.5	n/a	chrIV 12,911,360	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domains IPR000859 (CUB), IPR003366 (CUB-like region)
33	C49C3.4	C49C3.4	n/a	chrIV 17,324,683	contains similarity to Interpro domains IPR000742 (EGF-like, type 3), IPR006210 (EGF), IPR002049 (EGF-like, laminin), IPR013032 (EGF-like region, conserved site)
34	nlp-4	F59C6.6	n/a	chrI 10,516,896	nlp-4 encodes three predicted neuropeptide-like proteins; nlp-4 has no none homologs in other nematode species, and its expression pattern has not been determined; in addition, as loss of nlp-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of nlp-4-encoded peptides in development and/or behavior is not yet known.
35	alh-3	F36H1.6	n/a	chrIV 11,024,207	alh-3 encodes an aldehyde dehydrogenase predicted to be mitochondrial.
36	itx-1	W03D8.6	n/a	chrI 2,809,305	itx-1 encodes one of two Caspr orthologues found in the C. elegans genome; Caspr proteins belong to the Neurexin superfamily and are involved in mediating cell-cell contacts and in the formation of specialized membrane-domains in polarized epithelial and nerve cells; RNA interference of itx-1 suggests that itx-1 is involved in the correct positioning and maintenance of apical junctions and in maintaining epithelial integrity in the gut; gfp-reporter studies indicate that ITX-1 is expressed in intestinal cell epithelia and in the socket cells of the inner and outer labial sensilla; immunofluorescence studies indicate that ITX-1 localizes to the baso-lateral membranes of intestinal epithelia.
37	T20D4.6	T20D4.6	n/a	chrV 3,411,676	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR014752 (Arrestin, C-terminal), IPR011021 (Arrestin-like, N-terminal)
38	F58H1.6	F58H1.6	n/a	chrV 11,943,743	contains similarity to Interpro domains IPR000742 (EGF-like, type 3), IPR013032 (EGF-like region, conserved site)
39	fbxa-90	Y102A5C.19	n/a	chrV 16,967,704	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
40	col-79	C09G5.3	n/a	chrII 10,703,993	C. elegans COL-79 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
41	F21C10.7	F21C10.7	n/a	chrV 9,117,429	contains similarity to Pfam domains PF07686 (Immunoglobulin V-set domain) (2), PF00047 (Immunoglobulin domain) (3), PF07679 (Immunoglobulin I-set domain) (6)contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR002017 (Spectrin repeat), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR013106 (Immunoglobulin V-set), IPR007110 (Immunoglobulin-like), IPR003599 (Immunoglobulin subtype), IPR013151 (Immunoglobulin)
42	ZK180.2	ZK180.2	n/a	chrIV 4,504,345	contains similarity to Pfam domain PF01094 Receptor family ligand binding region contains similarity to Interpro domains IPR002455 (GPCR, family 3, gamma-aminobutyric acid receptor, type B), IPR001828 (Extracellular ligand-binding receptor), IPR000923 (Blue (type 1) copper domain)
43	Y48A6B.10	Y48A6B.10	n/a	chrIII 11,041,221	contains similarity to Interpro domain IPR000694 (Proline-rich region)
44	F55C5.2	F55C5.2	n/a	chrV 12,264,926	contains similarity to Pfam domain PF03009 Glycerophosphoryl diester phosphodiesterase family contains similarity to Interpro domain IPR004129 (Glycerophosphoryl diester phosphodiesterase)
45	F47F6.3	F47F6.3	n/a	chrII 1,264,985	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
46	F27E5.3	F27E5.3	n/a	chrII 10,142,746	contains similarity to Homo sapiens Isoform 1 of Cell division cycle 2-related protein kinase 7; ENSEMBL:ENSP00000300647
47	Y17D7B.4	Y17D7B.4	n/a	chrV 18,776,427
48	spe-26	R10H10.2	n/a	chrIV 10,390,752	spe-26 encodes a Kelch motif-containing protein similar to the Drosophila proteins kelch and diablo and the Limulus (horseshoe crab) actin-bundling protein scruin; SPE-26 activity is required for several processes including embryogenesis, spermatogenesis, thermotolerance, and regulation of lifespan; SPE-26 mRNA is detected in spermatogonial cells and spermatocytes, but not in spermatids.
49	F21A3.3	F21A3.3	n/a	chrV 15,518,665	F21A3.3 encodes a putatively secreted protein, with an N-terminal EGF-liked domain and a DUF1794 domain, that is homologous to human THAP4/CGI-36; F21A3.3 is a paralog of MAB-7, C15F1.1, C28H8.5, C52G5.2, T28H10.2, and a domain in Y46G5A.29.
50	twk-42	W06D12.2	n/a	chrV 17,728,557	C. elegans TWK-42 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2)