UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T26E4.2	T26E4.2	6e-72	chrV 15,781,680	contains similarity to Salmonella typhimurium Sialidase (EC 3.2.1.18) (Fragment).; TR:Q9R5J8
2	tag-4	ZK337.4	n/a	chrI 14,984,784	tag-4 encodes a novel protein with low similarity to human putative splicing factor YT521
3	srbc-26	F40D4.7	n/a	chrV 17,172,551	C. elegans SRBC-26 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
4	srd-55	K02A2.2	n/a	chrII 7,409,558	C. elegans SRD-55 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
5	sri-37	D2062.2	n/a	chrII 2,630,401	C. elegans SRI-37 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
6	sra-7	AH6.11	n/a	chrII 9,545,368	C. elegans SRA-7 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
7	srt-14	ZC142.2	n/a	chrV 4,255,024	C. elegans SRT-14 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
8	flp-27	C25H3.5	n/a	chrII 5,681,799	C. elegans FLP-27 protein ;
9	ZK353.5	ZK353.5	n/a	chrIII 8,394,543
10	F59H6.6	F59H6.6	n/a	chrII 2,011,980	contains similarity to Interpro domain IPR009057 (Homeodomain-like)
11	sri-9	Y102A5C.29	n/a	chrV 17,002,496	C. elegans SRI-9 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000565 (DNA topoisomerase, type IIA, subunit B)
12	T22E7.2	T22E7.2	n/a	chrI 5,767,620	contains similarity to Pfam domain PF01529 DHHC zinc finger domain contains similarity to Interpro domains IPR001594 (Zinc finger, DHHC-type), IPR007087 (Zinc finger, C2H2-type)
13	F53F1.6	F53F1.6	n/a	chrV 13,416,842	contains similarity to Aeropyrum pernix Elongation factor 1-beta (EF-1-beta) (aEF-1beta).; SW:EF1B_AERPE
14	C45E5.3	C45E5.3	n/a	chrIV 5,740,334	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR001574 (Ribosome-inactivating protein)
15	sri-46	K07E8.11	n/a	chrII 670,321	C. elegans SRI-46 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
16	T23D5.3	T23D5.3	n/a	chrV 15,733,239	contains similarity to Pfam domain PF03436 Domain of unknown function (DUF281) contains similarity to Interpro domains IPR000104 (Antifreeze protein, type I), IPR001859 (Ribosomal protein P2), IPR005098 (Protein of unknown function DUF281)
17	srx-120	F49C5.2	n/a	chrII 12,532,032	C. elegans SRX-120 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
18	C02E7.8	C02E7.8	n/a	chrV 4,920,552
19	srg-64	ZK678.6	n/a	chrX 15,738,657	C. elegans SRG-64 protein; contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
20	C49A9.7	C49A9.7	n/a	chrIV 6,203,875	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR001681 (Neurokinin receptor), IPR005395 (Neuropeptide FF receptor), IPR005384 (Duffy antigen/chemokine receptor), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
21	W09B6.5	W09B6.5	n/a	chrII 1,140,824
22	sri-69	Y102A5C.32	n/a	chrV 17,007,786	C. elegans SRI-69 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
23	C24A8.5	C24A8.5	n/a	chrX 4,328,634
24	Y51B9A.6	Y51B9A.6	n/a	chrII 9,401,875	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
25	srw-76	W06G6.6	n/a	chrV 16,637,565	C. elegans SRW-76 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
26	sre-30	F57G9.2	n/a	chrII 12,405,637	C. elegans SRE-30 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
27	C40H5.7	C40H5.7	n/a	chrX 11,746,531	contains similarity to Pfam domain PF00008 EGF-like domain contains similarity to Interpro domains IPR001438 (EGF-like, type 2), IPR000742 (EGF-like, type 3), IPR006209 (EGF-like), IPR006210 (EGF), IPR013032 (EGF-like region, conserved site)
28	ceh-14	F46C8.5	n/a	chrX 7,530,621	ceh-14 encodes a LIM homeodomain protein orthologous to Drosophila Lim3 and the vertebrate Lhx3 and Lhx4 proteins; ceh-14 is required for specification of the AFD thermosensory neurons and for normal thermotactic behavior; a ceh-14::GFP reporter fusion is expressed in head and tail neurons, including the AFD thermosensory neurons, during late embryonic, larval, and adult stages. Animals triply mutant for the LIM homeobox genes ceh-14, lin-11, and ttx-3 which are required for function of the AFD, AIZ, and AIY neurons, respectively, exhibit a basic cryophilic thermotaxis response suggesting that, in C. elegans, there is more than one pathway for integration of thermosensory input.
29	C46C2.3	C46C2.3	n/a	chrIV 9,226,726	contains similarity to Tropheryma whipplei DNA repair protein RecN.; TR:Q83NU4
30	Y75B8A.32	Y75B8A.32	n/a	chrIII 12,356,632	contains similarity to Danio rerio PERQ amino acid-rich with GYF domain-containing protein 2s(Trinucleotide repeat-containing gene 15 protein).; SW:Q4KME6
31	C35D6.3	C35D6.3	n/a	chrIV 16,347,259	contains similarity to Interpro domain IPR003100 (Argonaute and Dicer protein, PAZ)
32	C17H1.5	C17H1.5	n/a	chrI 13,115,023	contains similarity to Mus musculus Inner centromere protein.; SW:Q9WU62
33	C55B6.4	C55B6.4	n/a	chrX 7,187,869
34	F45F2.7	F45F2.7	n/a	chrV 8,523,135	contains similarity to Pfam domain PF03189 Protein of unknown function, DUF270 contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR004878 (Protein of unknown function DUF270), IPR016196 (MFS general substrate transporter)
35	T11F9.13	T11F9.13	n/a	chrV 11,482,664	contains similarity to Thermotoga maritima ATP-dependent CLP protease, ATPase subunit.; TR:Q9WY41
36	srv-19	H04M03.6	n/a	chrIV 5,873,058	C. elegans SRV-19 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
37	T24D5.4	T24D5.4	n/a	chrX 12,597,224	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
38	nhr-233	Y32B12B.6	n/a	chrV 16,570,335	C. elegans NHR-233 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
39	tba-5	F16D3.1	n/a	chrI 8,355,612	tba-5 encodes one of nine C. elegans alpha tubulins; by homology, TBA-5 is predicted to be a component of microtubules; as loss of tba-5 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, TBA-5 likely functions redundantly with other alpha tubulins as a basic component of cellular architecture that may play additional roles in processes such as cell division, cell movement, and intracellular transport.
40	K09H9.1	K09H9.1	n/a	chrI 3,154,202	contains similarity to Pfam domain PF06542 Protein of unknown function (DUF1114) contains similarity to Interpro domain IPR009497 (Protein of unknown function DUF1114)
41	Y37A1B.8	Y37A1B.8	n/a	chrIV 14,022,381	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
42	str-83	B0213.7	n/a	chrV 3,978,022	C. elegans STR-83 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR000344 (Nematode chemoreceptor, Sra), IPR003002 (7TM chemoreceptor, subfamily 1)
43	F10A3.12	F10A3.12	n/a	chrV 16,164,918	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
44	Y17G7B.13	Y17G7B.13	n/a	chrII 12,045,368	contains similarity to Pfam domain PF06090 Domain of unknown function (DUF941) contains similarity to Interpro domain IPR009286 (Protein of unknown function DUF941)
45	ifta-1	C54G7.4	n/a	chrX 5,549,123	C. elegans IFTA-1 protein; contains similarity to Pfam domain PF00400 WD domain, G-beta repeat contains similarity to Interpro domains IPR011046 (WD40 repeat-like), IPR017233 (WD repeat protein 35), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like), IPR011011 (Zinc finger, FYVE/PHD-type)
46	srx-119	F49C5.1	n/a	chrII 12,528,893	C. elegans SRX-119 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
47	C54G6.3	C54G6.3	n/a	chrI 996,578
48	C30E1.8	C30E1.8	n/a	chrX 16,917,982	contains similarity to Pfam domain PF03409 Protein of unknown function (DUF274) contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274)
49	R04B5.7	R04B5.7	n/a	chrV 10,089,830	contains similarity to Rattus norvegicus Protein tyrosine phosphatase TD14.; TR:O88902
50	Y70C5C.3	Y70C5C.3	n/a	chrV 16,714,293	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)