UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T24A6.7	T24A6.7	1.9999999999999998e-122	chrV 3,525,734	contains similarity to Pfam domain PF08719 Domain of unknown function (DUF1768) contains similarity to Interpro domain IPR012816 (Conserved hypothetical protein CHP02464)
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	K02D3.1	K02D3.1	n/a	chrX 13,707,203	contains similarity to Clostridium acetobutylicum Transcriptional regulator, AcrR family.; TR:Q97IH3
4	K11H12.3	K11H12.3	n/a	chrIV 672,557	contains similarity to Pfam domain PF03409 Protein of unknown function (DUF274) contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274)
5	R07G3.8	R07G3.8	n/a	chrII 7,619,307	contains similarity to Pfam domain PF07159 Protein of unknown function (DUF1394) contains similarity to Interpro domain IPR009828 (Protein of unknown function DUF1394)
6	pbs-6	C02F5.9	n/a	chrIII 8,243,577	The pbs-6 gene encodes a homolog of mammalian PSMB1.
7	snb-1	T10H9.4	n/a	chrV 6,656,014	The snb-1 gene encodes synaptobrevin, a synaptic vesicle protein orthologous to human vesicle-associated membrane protein 1 (VAMP1 OMIM:185880) and 2 (VAMP2 OMIM:185881), and is required for viability and synaptic transmission; SNB-1 is likely to play a role in vesicle docking and/or fusion and is expressed in neurons where it colocalizes with synaptic vesicle proteins RAB-3 and synaptotagmin.
8	C01B10.7	C01B10.7	n/a	chrIV 6,638,773	contains similarity to Interpro domain IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase)
9	C01C4.2	C01C4.2	n/a	chrX 3,717,428
10	B0198.2	B0198.2	n/a	chrX 12,030,645	contains similarity to Dictyostelium discoideum Non-receptor tyrosine kinase spore lysis A (EC 2.7.1.112) (Tyrosine-sprotein kinase 1).; SW:KYK1_DICDI
11	ins-35	K02E2.4	n/a	chrV 20,371,307	ins-35 encodes one of several insulin-related peptides.
12	K04A8.2	K04A8.2	n/a	chrV 6,563,097	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
13	F42G8.5	F42G8.5	n/a	chrIV 8,137,753
14	srx-45	K01B6.2	n/a	chrIII 9,305,269	C. elegans SRX-45 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
15	ZK757.2	ZK757.2	n/a	chrIII 9,875,718	contains similarity to Pfam domain PF00782 Dual specificity phosphatase, catalytic domain contains similarity to Interpro domains IPR000387 (Protein-tyrosine phosphatase), IPR000340 (Protein-tyrosine phosphatase, dual specificity)
16	str-161	T08B6.3	n/a	chrIV 4,903,231	C. elegans STR-161 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
17	W01C9.2	W01C9.2	n/a	chrII 8,537,366	contains similarity to Chlamydia pneumoniae Probable serine/threonine-protein kinase 1 (EC 2.7.1.37).; SW:PKN1_CHLPN
18	K11H3.5	K11H3.5	n/a	chrIII 9,844,623	contains similarity to Homo sapiens Splice isoform 1 of P49321 Nuclear autoantigenic sperm protein; ENSEMBL:ENSP00000320980
19	ZK678.3	ZK678.3	n/a	chrX 15,748,766	contains similarity to Pfam domain PF00134 Cyclin, N-terminal domain contains similarity to Interpro domains IPR006670 (Cyclin), IPR011028 (Cyclin-like), IPR013763 (Cyclin-related), IPR006671 (Cyclin, N-terminal)
20	C15C8.1	C15C8.1	n/a	chrV 12,735,091	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR003073 (Orphan nuclear receptor, NURR type)
21	F59F5.5	F59F5.5	n/a	chrX 10,547,442	contains similarity to Actinobacillus pleuropneumoniae KDO transferase.; TR:Q9AIE5
22	T01C4.1	T01C4.1	n/a	chrV 7,126,255	contains similarity to Pfam domains PF01476 (LysM domain) (4), PF05938 (Plant self-incompatibility protein S1) , PF00704 (Glycosyl hydrolases family 18) contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR010264 (Plant self-incompatibility S1), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR001579 (Glycoside hydrolase, chitinase active site), IPR002482 (Peptidoglycan-binding LysM), IPR001002 (Chitin-binding, type 1)
23	srd-48	F17A2.9	n/a	chrX 12,336,853	C. elegans SRD-48 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	srz-96	Y68A4A.6	n/a	chrV 17,200,545	C. elegans SRZ-96 protein; contains similarity to Interpro domain IPR000418 (Ets)
25	gcy-36	C46E1.2	n/a	chrX 15,482,280	gcy-36 encodes a predicted soluble guanylate cyclase that genetically interacts with npr-1 with respect to feeding behavior; expressed in AQR, PQR, and URX3.
26	dhs-16	C10F3.2	n/a	chrV 5,984,592	dhs-16 encodes a short-chain dehydrogenase predicted to be mitochondrial.
27	C49A9.7	C49A9.7	n/a	chrIV 6,203,875	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR001681 (Neurokinin receptor), IPR005395 (Neuropeptide FF receptor), IPR005384 (Duffy antigen/chemokine receptor), IPR000611 (Neuropeptide Y receptor), IPR000276 (GPCR, rhodopsin-like)
28	fbxa-81	T24C2.4	n/a	chrX 14,541,293	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
29	sre-13	C38C6.4	n/a	chrII 14,635,649	C. elegans SRE-13 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
30	F11D11.6	F11D11.6	n/a	chrV 18,752,774	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
31	sri-46	K07E8.11	n/a	chrII 670,321	C. elegans SRI-46 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
32	srg-36	K04C1.6	n/a	chrX 14,230,194	C. elegans SRG-36 protein; contains similarity to Interpro domains IPR000539 (Frizzled protein), IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
33	B0198.3	B0198.3	n/a	chrX 12,045,895	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
34	E04D5.4	E04D5.4	n/a	chrII 10,441,286	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
35	ZK353.5	ZK353.5	n/a	chrIII 8,394,543
36	Y26E6A.2	Y26E6A.2	n/a	chrX 13,911,881	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
37	kqt-3	Y54G9A.3	n/a	chrII 13,704,530	kqt-3 encodes one of three C. elegans KCNQ-like potassium channel subunits and, with respect to humans, is most similar to the KCNQ1 channel protein which when mutated leads to inherited long QT syndrome (OMIM:607542); although loss of KQT-3 activity via large-scale RNAi screens results in no obvious abnormalities, KQT-3 likely functions to regulate cellular excitability as expression of KQT-3 in Xenopus oocytes can produce K+ channel currents that functionally resemble vertebrate M-currents; activity of these KQT-3 channels can be suppressed by coexpression with the human M1 muscarinic receptor and treatment with diacylglycerol analogs, although KQT-3 is less sensitive to each of these treatments than KQT-1; a KQT-3::GFP fusion protein is expressed in the anterior- and posterior-most intestinal cells, the anterior and posterior mechanosensory neurons ALM and PLM, amphid and phasmid neurons, and in some additional head neurons.
38	M01F1.7	M01F1.7	n/a	chrIII 3,525,420	M01F1.7 encodes a phosphatidylinositol transfer protein, with a C-terminal DDHD domain, that is orthologous to RETINAL DEGENERATION B (RDGB) in D. melanogaster, as well as other orthologs in mammals (NIR1-3); M01F1.7 is expressed in the egg membrane, the germline, the spermatheca and three pairs of head neurons; while M01F1.7 would be expected to mediate PIP(2) signalling in either neuronal function or cytokinesis, it has not yet had a published mutant phenotype, and has no obvious function in mass RNAi assays.
39	M163.5	M163.5	n/a	chrX 14,475,017	contains similarity to Interpro domain IPR008995 ()
40	F54D5.11	F54D5.11	n/a	chrII 11,541,574	contains similarity to Pfam domain PF02186 TFIIE beta subunit core domain contains similarity to Interpro domains IPR011991 (Winged helix repressor DNA-binding), IPR016656 (Transcription initiation factor IIE, beta subunit), IPR003166 (Transcription factor TFIIE beta subunit, core)
41	ckr-1	T23B3.4	n/a	chrI 6,688,888	T23B3.4 encodes a seven transmembrane receptor that is most closely related to the mammalian cholecystokinin receptors; loss of T23B3.4 activity via RNAi, either singly or in combination with another cholecystokinin receptor-encoding gene, Y39A3B.5, has no effect on fat metabolism, however large-scale RNAi screens have reported that T23B3.4(RNAi) results in embryonic lethality and reduced brood sizes; a T23B3.4::GFP reporter is expressed in a subset of nerve ring neurons.
42	C41C4.1	C41C4.1	n/a	chrII 8,106,208	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
43	glb-9	C28F5.2	n/a	chrII 7,510,599	glb-9 encodes a globin with no obvious function in mass RNAi assays.
44	Y75B8A.11	Y75B8A.11	n/a	chrIII 12,188,150	contains similarity to Lymnaea stagnalis Neuropeptide Y precursor.; TR:Q9U0S9
45	F15A8.1	F15A8.1	n/a	chrX 4,441,526
46	fbxa-3	T08E11.7	n/a	chrII 1,819,483	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
47	B0024.3	B0024.3	n/a	chrV 10,288,395	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
48	F23D12.1	F23D12.1	n/a	chrX 14,425,936	contains similarity to Clostridium perfringens Hypothetical protein CPE1252.; TR:Q8XKZ0
49	T19C3.6	T19C3.6	n/a	chrIII 629,578
50	glb-2	C06E4.7	n/a	chrIV 7,262,720	glb-2 encodes a globin; glb-2 transcription is higher in L3 and dauers than in young adults; glb-2 has no obvious function in mass RNAi assays.