UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T20D4.17	T20D4.17	8.000000000000001e-71	chrV 3,395,750	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domain IPR002542 (Protein of unknown function DUF19)
2	daf-11	B0240.3	n/a	chrV 11,721,848	The daf-11 gene encodes a guanylate cyclase that affects dauer formation, chemotaxis, and axon formation; it is genetically upstream of daf-12 with respect to dauer larvae formation and is expressed in a subset of amphid neurons.
3	srab-1	C04F5.4	n/a	chrV 5,101,092	C. elegans SRAB-1 protein; contains similarity to Pfam domain PF02175 C.elegans integral membrane protein Srb contains similarity to Interpro domain IPR002184 (Serpentine beta receptor)
4	srz-31	H12I19.2	n/a	chrIV 14,138,796	C. elegans SRZ-31 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
5	sra-6	AH6.10	n/a	chrII 9,549,075	sra-6 encodes a seven-transmembrane chemosensory receptor; an sra-6::GFP fusion reporter is expressed in the ASH (strongly) and ASI (weakly) amphid sensory neurons, the PVQ interneurons, and in the SPD and SPV male spicule neurons; sra-6 expression in the ASH neurons is positively regulated by KIN-29, a serine/threonine kinase, acting through the HDA-4 class II histone deacetylase and the MEF-2 MADS domain transcription factor; in addition, maintenance of sra-6::gfp expression in the ASH and ASI requires activity of the DAF-7/TGF-beta signaling pathway.
6	srw-44	F14F8.6	n/a	chrV 16,681,440	C. elegans SRW-44 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300), IPR000276 (GPCR, rhodopsin-like)
7	sos-1	T28F12.3	n/a	chrV 4,533,472	The sos-1 gene, also known as let-341, encodes an ortholog of Son of sevenless, a guanine nucleotide exchange factor that affects viability, sex myoblast migration, vulval induction, and oogenesis; it acts genetically downstream of let-23 and upstream of let-60 with respect to vulval development.
8	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
9	srw-109	ZK488.9	n/a	chrV 607,863	C. elegans SRW-109 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR008075 (Lipocalin-1 receptor)
10	col-78	W07A12.5	n/a	chrII 9,153,340	C. elegans COL-78 protein; contains similarity to Pfam domain PF01391 Collagen triple helix repeat (20 copies) contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
11	C54F6.6	C54F6.6	n/a	chrV 7,525,196
12	C07A9.10	C07A9.10	n/a	chrIII 9,685,849	contains similarity to Pfam domain: PF00442 (Ubiquitin carboxyl-terminal hydrolases family 2), Score=28.0, E-value=1e-05, N=1
13	srh-139	F57E7.3	n/a	chrV 16,484,653	C. elegans SRH-139 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
14	egl-38	C04G2.7	n/a	chrIV 10,108,695	The egl-38 gene encodes a Pax5 homolog.
15	glb-8	C26C6.7	n/a	chrI 7,510,602	glb-8 encodes a globin with no obvious function in mass RNAi assays; glb-8 expression is induced by anoxia in a HIF-1 dependent manner, although it is also paradoxically upregulated in a hif-1 mutant background; glb-8 expression is downregulated in a daf-2(e1370) mutant background under normoxic conditions; glb-8 expression is lower in L3 larvae than in young adults or dauers.
16	C52A11.3	C52A11.3	n/a	chrII 10,737,705	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
17	abf-3	F54B8.5	n/a	chrV 15,817,602	abf-3 encodes a homolog of the antibacterial factor ASABF from Ascaris suum; ABF-3 may play a role in innate immunity, though at present the only evidence for its having an antimicrobial humoral function is its sequence similarity.
18	F02D10.2	F02D10.2	n/a	chrX 13,463,605	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I256
19	F58E2.3	F58E2.3	n/a	chrIV 3,468,626	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
20	C30G4.2	C30G4.2	n/a	chrX 17,044,626	contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold)
21	spp-12	T22G5.7	n/a	chrV 13,890,091	C. elegans SPP-12 protein; contains similarity to Interpro domains IPR011001 (Saposin-like), IPR008139 (Saposin B)
22	srh-219	C06B8.6	n/a	chrV 15,496,906	C. elegans SRH-219 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
23	srb-15	C48B6.5	n/a	chrI 6,899,186	C. elegans SRB-15 protein; contains similarity to Pfam domains PF02117 (C.elegans Sra family integral membrane protein) , PF02175 (C.elegans integral membrane protein Srb) contains similarity to Interpro domains IPR002184 (Serpentine beta receptor), IPR000344 (Nematode chemoreceptor, Sra)
24	srx-34	T01C4.4	n/a	chrV 7,119,646	C. elegans SRX-34 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
25	srz-95	Y102A5C.33	n/a	chrV 16,992,941	C. elegans SRZ-95 protein ;
26	exc-9	F20D12.5	n/a	chrIV 7,940,302	exc-9 encodes a LIM domain-containing protein; exc-9 activity is required for proper development and morphogenesis of the excretory cell canal.
27	srg-17	F15A4.7	n/a	chrII 12,474,385	C. elegans SRG-17 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
28	B0554.5	B0554.5	n/a	chrV 425,501	contains similarity to Pfam domain PF05978 Eukaryotic protein of unknown function (DUF895) contains similarity to Interpro domains IPR010291 (Protein of unknown function DUF895, eukaryotic), IPR016196 (MFS general substrate transporter)
29	M03E7.4	M03E7.4	n/a	chrV 5,611,266	M03E7.4 encodes a protein, predicted to be secreted, with one chitin-binding peritrophin-A and three low-density lipoprotein receptor domain class A domains; M03E7.4 has no obvious function in mass RNAi assays.
30	W08F4.5	W08F4.5	n/a	chrII 567,279
31	twk-35	F31D4.7	n/a	chrV 20,859,750	C. elegans TWK-35 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR013099 (Ion transport 2)
32	Y11D7A.10	Y11D7A.10	n/a	chrIV 9,259,330	contains similarity to Coniophora arida ATP synthase subunit 6 (EC 3.6.3.14) (ATP synthase A chain)s(Fragment).; TR:Q9XLN6
33	ZK643.7	ZK643.7	n/a	chrIII 8,925,977
34	F09F3.5	F09F3.5	n/a	chrV 13,851,828	contains similarity to Pfam domain PF03098 Animal haem peroxidase contains similarity to Interpro domains IPR010255 (Haem peroxidase), IPR002007 (Haem peroxidase, animal)
35	srd-47	F17A2.11	n/a	chrX 12,334,389	C. elegans SRD-47 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
36	clec-2	B0454.7	n/a	chrII 3,021,991	C. elegans CLEC-2 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00059 (Lectin C-type domain) (2)contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
37	fipr-21	F41E7.5	n/a	chrX 10,304,659	C. elegans FIPR-21 protein ; contains similarity to Drosophila melanogaster Flybase gene name is CG8157-PA;; FLYBASE:CG8157
38	F35E8.9	F35E8.9	n/a	chrV 15,916,920	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
39	F15H10.5	F15H10.5	n/a	chrV 10,418,359	contains similarity to Borrelia burgdorferi Hypothetical protein BB0170.; TR:O51192
40	D1022.5	D1022.5	n/a	chrII 7,458,058
41	ceh-28	K03A11.3	n/a	chrX 13,075,231	A homeobox protein of the NK-2 family; it is expressed in a single pharyngeal neuron, M4.
42	F35C12.1	F35C12.1	n/a	chrI 9,805,249	contains similarity to Ralstonia solanacearum PopB.; TR:Q84IE7
43	Y18D10A.4	Y18D10A.4	n/a	chrI 12,816,155	contains similarity to Thecacera pennigera Cytochrome oxidase subunit I (EC 1.9.3.1) (Cytochrome c oxidasespolypeptide I) (Fragment).; TR:Q9T6F2
44	ZK892.6	ZK892.6	n/a	chrII 9,979,541	contains similarity to Vibrio parahaemolyticus Hypothetical protein.; TR:Q87PB2
45	nhr-288	Y51A2B.3	n/a	chrV 18,381,620	C. elegans NHR-288 protein; contains similarity to Pfam domain PF00104 Ligand-binding domain of nuclear hormone receptor contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
46	srx-66	K07C6.9	n/a	chrV 3,920,192	C. elegans SRX-66 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
47	R09D1.5	R09D1.5	n/a	chrII 9,448,892	contains similarity to Pfam domain PF00704 Glycosyl hydrolases family 18 contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core), IPR001223 (Glycoside hydrolase, family 18, catalytic domain), IPR013781 (Glycoside hydrolase, subgroup, catalytic core)
48	lips-8	F31F6.7	n/a	chrX 14,899,559	C. elegans LIPS-8 protein; contains similarity to Pfam domain PF01674 Lipase (class 2) contains similarity to Interpro domain IPR002918 (Lipase, class 2)
49	C07C7.1	C07C7.1	n/a	chrIV 9,184,575	contains similarity to Mycoplasma pulmonis Hypothetical protein MYPU_0790.; TR:Q98RD0
50	srx-54	Y102A5C.22	n/a	chrV 16,975,937	C. elegans SRX-54 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32), IPR000276 (GPCR, rhodopsin-like)