UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T12A2.3	T12A2.3	4e-94	chrIII 6,241,137
2	nhr-2	C32F10.6	n/a	chrI 5,819,797	nhr-2 encodes a member of the nuclear hormone receptor family that is required for embryonic viability and morphogenesis; expressed during embryogenesis.
3	T22C8.4	T22C8.4	n/a	chrII 8,623,075	contains similarity to Interpro domains IPR003656 (Zinc finger, BED-type predicted), IPR007087 (Zinc finger, C2H2-type)
4	F14H3.5	F14H3.5	n/a	chrV 16,056,489	contains similarity to Saccharomyces cerevisiae may be involved in connecting nuclear microtubules to the spindle pole body; SGD:YDR356W
5	F55G7.2	F55G7.2	n/a	chrX 11,930,695	contains similarity to Pfam domain PF08123 Histone methylation protein DOT1 contains similarity to Interpro domain IPR013110 (Histone methylation DOT1)
6	ZK816.4	ZK816.4	n/a	chrX 3,349,628
7	ZK177.1	ZK177.1	n/a	chrII 5,527,848
8	C56C10.10	C56C10.10	n/a	chrII 6,593,325	contains similarity to Pfam domains PF07719 (Tetratricopeptide repeat) , PF00515 (Tetratricopeptide repeat) contains similarity to Interpro domains IPR011990 (Tetratricopeptide-like helical), IPR001440 (Tetratricopeptide TPR-1), IPR013105 (Tetratricopeptide TPR2), IPR013026 (Tetratricopeptide region)
9	T04D3.5	T04D3.5	n/a	chrI 13,330,023
10	sdz-10	F08D12.9	n/a	chrII 2,771,674	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
11	T24C4.2	T24C4.2	n/a	chrIII 868,674
12	F42E11.3	F42E11.3	n/a	chrX 11,375,032	contains similarity to Streptococcus mutans Conserved hypothetical protein, possible membrane protein.; TR:Q8DV46
13	B0304.2	B0304.2	n/a	chrII 4,524,073
14	T02G6.5	T02G6.5	n/a	chrI 11,818,227	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
15	cut-6	M142.2	n/a	chrIII 10,913,915	C. elegans CUT-6 protein; contains similarity to Pfam domains PF00100 (Zona pellucida-like domain) , PF00092 (von Willebrand factor type A domain) contains similarity to Interpro domains IPR001507 (Endoglin/CD105 antigen), IPR002035 (von Willebrand factor, type A)
16	F13E6.3	F13E6.3	n/a	chrX 10,681,621	contains similarity to Interpro domains IPR001965 (Zinc finger, PHD-type), IPR011011 (Zinc finger, FYVE/PHD-type)
17	F19B10.2	F19B10.2	n/a	chrII 3,676,170
18	twk-44	Y71H9A.1	n/a	chrX 11,625,639	C. elegans TWK-44 protein; contains similarity to Pfam domain PF07885 Ion channel contains similarity to Interpro domains IPR003280 (Potassium channel, two pore-domain), IPR011001 (Saposin-like), IPR008139 (Saposin B), IPR013099 (Ion transport 2)
19	hot-6	C13G3.2	n/a	chrV 11,021,972	C. elegans HOT-6 protein ;
20	T09E11.10	T09E11.10	n/a	chrI 12,346,532	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
21	F48C1.5	F48C1.5	n/a	chrI 5,317,876
22	nhr-263	F10G2.9	n/a	chrV 7,341,043	C. elegans NHR-263 protein; contains similarity to Pfam domain PF00104 Ligand-binding domain of nuclear hormone receptor contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
23	F41C6.3	F41C6.3	n/a	chrX 6,870,780
24	Y43F11A.4	Y43F11A.4	n/a	chrII 12,120,633	contains similarity to Bos taurus Phosphatidylinositol 3-kinase regulatory gamma subunit (PI3-kinasesp85-gamma subunit) (PtdIns-3-kinase p85-gamma) (p55PIK).; SW:P55G_BOVIN
25	C13F10.2	C13F10.2	n/a	chrV 7,221,750	contains similarity to Drosophila melanogaster Flybase gene name is CG10681-PA;; FLYBASE:CG10681
26	D1007.4	D1007.4	n/a	chrI 4,580,304	contains similarity to Homo sapiens Gem-associated protein 6; ENSEMBL:ENSP00000281950
27	R07C3.6	R07C3.6	n/a	chrII 924,524
28	fbxb-111	F08D12.11	n/a	chrII 2,774,479	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
29	F31B9.3	F31B9.3	n/a	chrX 15,924,034	contains similarity to Homo sapiens Similar to polymerase (RNA) III; ENSEMBL:ENSP00000334758
30	C47F8.7	C47F8.7	n/a	chrI 12,326,720
31	T22C1.5	T22C1.5	n/a	chrI 7,941,375	contains similarity to Saccharomyces cerevisiae Iswi One Complex; SGD:YMR044W
32	sra-25	T26E3.9	n/a	chrI 12,687,150	C. elegans SRA-25 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR000344 (Nematode chemoreceptor, Sra)
33	K04G2.10	K04G2.10	n/a	chrI 8,059,153	contains similarity to Homo sapiens Meiosis-specific nuclear structural protein 1; ENSEMBL:ENSP00000260453
34	B0281.4	B0281.4	n/a	chrII 2,298,366	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
35	ZC53.1	ZC53.1	n/a	chrX 1,912,323
36	cks-1	C09G4.3	n/a	chrIV 8,514,308	A homolog of Cks/Suc1, a highly conserved member of the eukaryotic cell cycle machinery that affects both meiosis and mitosis and has a role in the inactivation of the M-phase promoting factor (MPF) during early embryogenesis.
37	skr-16	C42D4.6	n/a	chrIV 7,169,011	The skr-16 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-16(RNAi) animals are at least superficially normal.
38	B0334.4	B0334.4	n/a	chrII 11,496,096	contains similarity to Pfam domain PF04707 PRELI-like family contains similarity to Interpro domain IPR006797 (MSF1)
39	C18A3.1	C18A3.1	n/a	chrII 5,720,938	contains similarity to Pfam domain PF05063 MT-A70 contains similarity to Interpro domains IPR007757 (MT-A70), IPR002052 (N-6 adenine-specific DNA methylase, conserved site)
40	fbxb-25	F58E1.2	n/a	chrII 1,684,456	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
41	T01G5.7	T01G5.7	n/a	chrV 15,112,773	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
42	F34D10.3	F34D10.3	n/a	chrIII 3,734,527	contains similarity to Interpro domain IPR004061 (Sphingosine 1-phosphate receptor)
43	ZK643.2	ZK643.2	n/a	chrIII 8,957,012	contains similarity to Pfam domain PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region contains similarity to Interpro domains IPR016192 (APOBEC/CMP deaminase, zinc-binding), IPR002125 (CMP/dCMP deaminase, zinc-binding), IPR016473 (dCMP deaminase), IPR016193 (Cytidine deaminase-like), IPR015517 (Cytidine deaminase)
44	F44A6.3	F44A6.3	n/a	chrX 10,213,400	contains similarity to Human parainfluenza 1 virus RNA polymerase alpha subunit (EC 2.7.7.48) (Nucleocapsidsphosphoprotein).; SW:RRPP_PI1HB
45	C33F10.2	C33F10.2	n/a	chrII 4,830,501	contains similarity to Pfam domains PF00069 (Protein kinase domain) , PF00566 (TBC domain) contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR002290 (Serine/threonine protein kinase), IPR000195 (RabGAP/TBC), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
46	mdt-10	T09A5.6	n/a	chrII 7,854,378	C. elegans MDT-10 protein ; contains similarity to Homo sapiens Mediator of RNA polymerase II transcription subunit 10; ENSEMBL:ENSP00000255764
47	B0416.4	B0416.4	n/a	chrX 9,279,335	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR001841 (Zinc finger, RING-type), IPR000956 (Stathmin), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
48	meg-2	K02B9.2	n/a	chrX 13,924,518	meg-2 encodes a novel protein that localizes exclusively to P granules; originally identified by microarray analyses of germline-enriched transcripts, loss of meg-2 activity by itself results in no obvious abnormalities, but loss of meg-2 activity in meg-1 mutant animals indicates that meg-1 and meg-2 likely have redundant functions in germline development; meg-2 may also function redundantly with mes-1; meg-2 expression in the proximal germline is positively regulated by MPK-1, the C. elegans MAP kinase ortholog; a GFP::MEG-2 fusion protein localizes exclusively to P granules in the embryonic germ cell lineage.
49	bath-10	Y49F6C.4	n/a	chrII 3,375,923	C. elegans BATH-10 protein; contains similarity to Pfam domains PF00651 (BTB/POZ domain) , PF00917 (MATH domain) contains similarity to Interpro domains IPR002083 (MATH), IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
50	F35H10.5	F35H10.5	n/a	chrIV 8,300,920