UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	sri-54	T10D4.8	2e-178	chrII 3,136,737	C. elegans SRI-54 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR001411 (Tetracycline resistance protein, TetB)
2	ZK1055.5	ZK1055.5	n/a	chrV 6,582,618	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
3	R03A10.5	R03A10.5	n/a	chrX 15,448,432	contains similarity to Pfam domains PF01105 (emp24/gp25L/p24 family/GOLD) , PF00650 (CRAL/TRIO domain) contains similarity to Interpro domains IPR001251 (Cellular retinaldehyde-binding/triple function, C-terminal), IPR000348 (emp24/gp25L/p24)
4	D2045.7	D2045.7	n/a	chrIII 10,480,900	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
5	C54H2.4	C54H2.4	n/a	chrX 5,768,086
6	bli-3	F56C11.1	n/a	chrI 150,659	bli-3 encodes a large homolog of dual oxidase ('Ce-Duox1'), with an N-terminal peroxidase domain, two central calmodulin-binding EF hands, and a C-terminal superoxide-generating NADPH-oxidase domain; BLI-3 is required for dityrosine cross-linking of collagen, and thus for cuticular integrity; BLI-3 is thought to use cytosolic NADPH to generate reactive oxygen, which then drives the peroxidase ectodomain to cross-link free tyrosine in collagen; BLI-3 is expressed exclusively in hypodermal cells at low levels, with peaks of expression corresponding to collagen/cuticle biosynthesis.
7	C40A11.5	C40A11.5	n/a	chrII 2,134,686	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
8	F18E3.10	F18E3.10	n/a	chrV 7,424,056	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	F46B3.16	F46B3.16	n/a	chrV 20,630,275
10	T07D3.2	T07D3.2	n/a	chrII 902,779	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
11	gnrr-7	F13D2.3	n/a	chrX 11,186,568	C. elegans GNRR-7 protein; contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
12	fbxb-118	W06A11.3	n/a	chrII 4,063,201	C. elegans FBXB-118 protein ;
13	R12C12.4	R12C12.4	n/a	chrII 6,039,457
14	T26C11.4	T26C11.4	n/a	chrX 1,843,047	contains similarity to Dictyostelium discoideum Similar to Homo sapiens (Human). Dentin sialophosphoprotein [Contains:sDentin phosphoprotein (Dentin phosphophoryn) (DPP); Dentinssialoprotein (DSP)].; TR:Q869X8
15	C25E10.7	C25E10.7	n/a	chrV 9,050,528	C25E10.7 encodes a putative secreted TIL-domain protease inhibitor paralogous to SWM-1, ISL-1, and the products of 11 other C. elegans genes; C25E10.7 and its relatives are collectively similar to other TIL-domain protease inhibitors from nematodes, insects, and vertebrates; C25E10.7 has no obvious function in mass RNAi assays.
16	nhr-53	K06B4.11	n/a	chrV 15,701,459	C. elegans NHR-53 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
17	C08B6.10	C08B6.10	n/a	chrV 10,126,265	contains similarity to Interpro domains IPR006030 (Molluscan rhodopsin C-terminal tail), IPR000694 (Proline-rich region)
18	F31F7.3	F31F7.3	n/a	chrV 6,269,506
19	srh-178	ZK228.8	0.00002	chrV 18,479,364	C. elegans SRH-178 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
20	rrf-3	F10B5.7	n/a	chrII 8,165,532	rrf-3 encodes an RNA-directed RNA polymerase (RdRP) homolog that inhibits somatic RNAi, and thus promotes activity of repeated genes (e.g., multicopy transgenic arrays); the effect of RRF-3 on RNAi is opposite to that of RRF-1 (which stimulates somatic RNAi), which might arise from competition by RRF-3 with RRF-1 or EGO-1 in RNAi formation; rrf-3(allele) or rrf-3(allele2) mutants are hypersensitive to somatic RNAi, and conversely suppress the activity of an integrated rol6 (su1006) transgene.
21	cdc-25.2	F16B4.8	n/a	chrV 1,581,313	cdc-25.2 encodes a putative homolog of Cdc25 phosphatase protein family that affects germline proliferation.
22	T07A5.3	T07A5.3	n/a	chrIII 10,301,759	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
23	K04F1.13	K04F1.13	n/a	chrV 1,652,895	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
24	clec-183	T20D3.1	n/a	chrIV 9,328,354	C. elegans CLEC-183 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
25	H25P06.4	H25P06.4	n/a	chrI 11,307,702	contains similarity to Pfam domain PF05699 hAT family dimerisation domain contains similarity to Interpro domains IPR001300 (Peptidase C2, calpain), IPR008906 (HAT dimerisation)
26	E01B7.1	E01B7.1	n/a	chrV 17,926,717	contains similarity to Interpro domains IPR001763 (Rhodanese-like), IPR000694 (Proline-rich region)
27	C36B7.2	C36B7.2	n/a	chrX 7,106,598	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
28	T10E9.5	T10E9.5	n/a	chrI 6,522,462
29	T24A6.16	T24A6.16	n/a	chrV 3,562,186	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
30	C26B2.5	C26B2.5	n/a	chrIV 8,040,889
31	C31B8.2	C31B8.2	n/a	chrV 2,917,112	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
32	str-181	R11D1.6	n/a	chrV 12,717,648	C. elegans STR-181 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
33	K05G3.2	K05G3.2	n/a	chrX 16,497,319
34	C23H5.1	C23H5.1	n/a	chrIV 2,132,010	contains similarity to Pfam domains PF08242 (Methyltransferase domain) , PF08241 (Methyltransferase domain) contains similarity to Interpro domains IPR013217 (Methyltransferase type 12), IPR013216 (Methyltransferase type 11)
35	srw-14	C41G6.8	n/a	chrV 15,226,687	C. elegans SRW-14 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000975 (Interleukin-1)
36	cyp-33B1	C25E10.2	n/a	chrV 9,042,479	C. elegans CYP-33B1 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I)
37	Y37E11B.9	Y37E11B.9	n/a	chrIV 3,602,566
38	C17D12.7	C17D12.7	n/a	chrI 11,607,946	contains similarity to Saccharomyces cerevisiae Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern; SGD:YGL174W
39	Y54E2A.2	Y54E2A.2	n/a	chrII 14,750,101	contains similarity to Interpro domain IPR003593 (AAA+ ATPase, core)
40	C50A2.4	C50A2.4	n/a	chrIV 1,160,591	contains similarity to Pfam domain PF00178 Ets-domain contains similarity to Interpro domains IPR000418 (Ets), IPR011991 (Winged helix repressor DNA-binding)
41	set-8	F02D10.7	n/a	chrX 13,447,398	set-8 encodes a protein with an N-terminal RING-type zinc finger, and a C-terminal SET domain; SET-8 has no non-nematode orthologs, but is paralogous to MES-4; SET-8 is required for a normally low spontaneous somatic mutation rate; otherwise, neither set-8(tm2113) nor set-8(RNAi) have any obvious phenotypes.
42	str-52	C45H4.12	n/a	chrV 2,145,082	C. elegans STR-52 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
43	AH9.1	AH9.1	n/a	chrX 2,245,299	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
44	F58E2.5	F58E2.5	n/a	chrIV 3,445,718	contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR001283 (Allergen V5/Tpx-1 related)
45	C31B8.9	C31B8.9	n/a	chrV 2,912,083	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
46	ZC404.1	ZC404.1	n/a	chrV 6,794,516
47	math-5	C16C4.10	n/a	chrII 1,882,210	C. elegans MATH-5 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
48	C47E8.3	C47E8.3	n/a	chrV 14,681,957	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
49	W03B1.5	W03B1.5	n/a	chrIV 4,350,140	contains similarity to Interpro domain IPR000694 (Proline-rich region)
50	Y75B8A.6	Y75B8A.6	n/a	chrIII 12,127,086	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).