UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T10B9.9	T10B9.9	4e-65	chrII 9,775,421	contains similarity to Avian adenovirus gal1 Orf2 protein.; TR:Q64786
2	srab-6	C36C5.10	n/a	chrV 3,151,224	C. elegans SRAB-6 protein ;
3	C50F2.1	C50F2.1	n/a	chrI 3,893,803	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
4	str-264	C06B8.4	n/a	chrV 15,491,810	C. elegans STR-264 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
5	srh-296	Y94A7B.4	n/a	chrV 17,811,540	C. elegans SRH-296 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
6	F28C6.5	F28C6.5	n/a	chrII 8,599,990	contains similarity to Mus musculus Activity-dependent neuroprotector (Activity-dependent neuroprotectivesprotein).; SW:ADNP_MOUSE
7	grl-13	F32D1.4	n/a	chrV 4,363,652	grl-13 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity region, and a C-terminal Ground-like (Grl) domain; GRL-13 is expressed in larval arcade cells; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
8	scl-20	ZK384.2	n/a	chrV 18,733,634	C. elegans SCL-20 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
9	T07D3.2	T07D3.2	n/a	chrII 902,779	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
10	D1065.3	D1065.3	n/a	chrV 4,060,947	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
11	Y26D4A.5	Y26D4A.5	n/a	chrI 13,076,809	contains similarity to Staphylococcus aureus Hypothetical protein SAV2385 (Hypothetical protein MW2305).; TR:Q99RP4
12	C04C3.6	C04C3.6	n/a	chrIV 3,421,207	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
13	K05G3.2	K05G3.2	n/a	chrX 16,497,319
14	str-109	F10A3.5	n/a	chrV 16,161,427	C. elegans STR-109 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
15	C18H7.1	C18H7.1	n/a	chrIV 618,237	contains similarity to Pfam domain PF00092 von Willebrand factor type A domain contains similarity to Interpro domain IPR002035 (von Willebrand factor, type A)
16	F53A9.5	F53A9.5	n/a	chrX 8,699,785	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
17	C10A4.5	C10A4.5	n/a	chrX 7,394,900
18	K03E5.1	K03E5.1	n/a	chrI 3,431,349	contains similarity to Pfam domain PF00431 CUB domain contains similarity to Interpro domains IPR002172 (Low density lipoprotein-receptor, class A, cysteine-rich), IPR000859 (CUB)
19	F28G4.5	F28G4.5	n/a	chrV 16,290,444	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
20	W04A4.4	W04A4.4	n/a	chrI 13,676,809	contains similarity to Pfam domain PF00648 Calpain family cysteine protease contains similarity to Interpro domain IPR001300 (Peptidase C2, calpain)
21	hyl-2	K02G10.6	n/a	chrX 4,698,095	hyl-2 encodes a predicted transmembrane protein that is related to Saccharomyces cerevisiae LAG1 (longevity assurance gene), a protein preferentially expressed in young yeasts; by homology, HYL-2 is predicted to have several possible functions, including regulation of lipid, particularly ceramide, biosynthesis, regulation of lipid transport, and regulation of protein translocation in the endoplasmic reticulum ; however, as loss of hyl-2 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of hyl-2 in C. elegans development and/or behavior is not yet known.
22	Y75B8A.6	Y75B8A.6	n/a	chrIII 12,127,086	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
23	str-14	T08G3.2	n/a	chrV 16,454,252	C. elegans STR-14 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	F11A5.4	F11A5.4	n/a	chrV 16,195,957	contains similarity to Pfam domains PF00071 (Ras family) , PF08477 (Miro-like protein) contains similarity to Interpro domains IPR002041 (Ran GTPase), IPR003577 (Ras small GTPase, Ras type), IPR013684 (Miro-like), IPR003578 (Ras small GTPase, Rho type), IPR005225 (Small GTP-binding protein), IPR001806 (Ras GTPase), IPR003579 (Ras small GTPase, Rab type), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit), IPR006688 (ADP-ribosylation factor), IPR013753 (Ras)
25	sri-39	F33H12.2	n/a	chrII 2,588,572	C. elegans SRI-39 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
26	F58D12.3	F58D12.3	n/a	chrV 14,062,015	contains similarity to Interpro domain IPR009091 (Regulator of chromosome condensation/beta-lactamase-inhibitor protein II)
27	C46H11.3	C46H11.3	n/a	chrI 5,041,773	contains similarity to Pfam domain PF04699 ARP2/3 complex 16 kDa subunit (p16-Arc) contains similarity to Interpro domains IPR006789 (ARP2/3 complex 16 kDa subunit (p16-Arc)), IPR002052 (N-6 adenine-specific DNA methylase, conserved site)
28	C36B7.2	C36B7.2	n/a	chrX 7,106,598	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
29	str-181	R11D1.6	n/a	chrV 12,717,648	C. elegans STR-181 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	sre-38	F15A4.1	n/a	chrII 12,458,457	C. elegans SRE-38 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
31	srx-122	F35F10.8	n/a	chrV 3,296,984	C. elegans SRX-122 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
32	set-8	F02D10.7	n/a	chrX 13,447,398	set-8 encodes a protein with an N-terminal RING-type zinc finger, and a C-terminal SET domain; SET-8 has no non-nematode orthologs, but is paralogous to MES-4; SET-8 is required for a normally low spontaneous somatic mutation rate; otherwise, neither set-8(tm2113) nor set-8(RNAi) have any obvious phenotypes.
33	sfxn-1.1	AH6.2	n/a	chrII 9,518,171	C. elegans SFXN-1.1 protein; contains similarity to Pfam domain PF03820 Tricarboxylate carrier contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)
34	C05C10.1	C05C10.1	n/a	chrII 9,918,735	contains similarity to Pfam domain PF00328 Histidine acid phosphatase contains similarity to Interpro domain IPR000560 (Histidine acid phosphatase)
35	srz-70	C09G12.6	n/a	chrIV 3,478,198	C. elegans SRZ-70 protein ;
36	T20H12.1	T20H12.1	n/a	chrII 3,950,365
37	T24C2.3	T24C2.3	n/a	chrX 14,544,021	contains similarity to Arabidopsis thaliana F25I16.10 protein.; TR:Q9FZ78
38	F59B2.11	F59B2.11	n/a	chrIII 9,014,893	contains similarity to Homo sapiens hypothetical protein; VG:OTTHUMP00000025312
39	srw-143	H27D07.3	n/a	chrV 2,940,553	C. elegans SRW-143 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
40	ZK1055.5	ZK1055.5	n/a	chrV 6,582,618	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
41	F54G2.2	F54G2.2	n/a	chrX 2,636,226	contains similarity to Pfam domain PF00098 Zinc knuckle contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR001969 (Peptidase aspartic, active site), IPR001878 (Zinc finger, CCHC-type)
42	srw-84	Y43F8A.4	n/a	chrV 19,382,978	C. elegans SRW-84 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
43	C17C3.9	C17C3.9	n/a	chrII 5,531,799
44	C34D1.1	C34D1.1	n/a	chrV 13,224,279	contains similarity to Pfam domain PF00751 (DM DNA binding domain)
45	srx-23	F31F4.2	n/a	chrV 683,114	C. elegans SRX-23 protein ;
46	K10B4.4	K10B4.4	n/a	chrII 124,170	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002286 (P2 purinoceptor), IPR005390 (Neuromedin U receptor), IPR000276 (GPCR, rhodopsin-like)
47	W10D9.2	W10D9.2	n/a	chrII 451,150	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
48	C31B8.9	C31B8.9	n/a	chrV 2,912,083	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
49	nhr-75	C49D10.6	n/a	chrII 3,867,513	C. elegans NHR-75 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
50	srbc-41	F16B4.10	n/a	chrV 1,613,815	C. elegans SRBC-41 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR002651 (Protein of unknown function DUF32), IPR000832 (GPCR, family 2, secretin-like)