UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	srw-53	T05G11.7	0	chrV 15,944,112	C. elegans SRW-53 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR010726 (Protein of unknown function DUF1300)
2	srh-222	F47C12.10	n/a	chrIV 3,980,509	C. elegans SRH-222 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
3	C01H6.9	C01H6.9	n/a	chrI 7,231,276	C01H6.9 encodes a homolog of haploid germ cell-specific nuclear protein kinase (haspin) that specifically binds GOA-1 in yeast two-hybrid assays; C01H6.9 is expressed in PHB sensory neurons and PVT interneurons in the tail, several unidentified neurons in the head (with projections to the nose and nerve ring), and intestinal cells, with mainly nuclear localization; C01H6.9 has no obvious function or phenotype in RNAi assays, either alone or with inactivation of a close paralog (F22H10.5).
4	F44E5.2	F44E5.2	n/a	chrII 11,770,321	contains similarity to Pfam domain PF00560 Leucine Rich Repeat
5	Y39E4B.7	Y39E4B.7	n/a	chrIII 13,113,204	contains similarity to Pfam domain PF01529 (DHHC zinc finger domain)
6	C45G9.2	C45G9.2	n/a	chrIII 5,069,704	contains similarity to Pfam domain PF01207 Dihydrouridine synthase (Dus) contains similarity to Interpro domains IPR013785 (Aldolase-type TIM barrel), IPR003733 (Thiamine monophosphate synthase), IPR001269 (Dihydrouridine synthase, DuS)
7	F40E3.3	F40E3.3	n/a	chrI 2,638,982
8	Y52B11A.9	Y52B11A.9	n/a	chrI 11,036,452	contains similarity to Interpro domains IPR003604 (Zinc finger, U1-type), IPR005824 (KOW), IPR002358 (Ribosomal protein L6, conserved site-1), IPR007087 (Zinc finger, C2H2-type)
9	Y51A2A.5	Y51A2A.5	n/a	chrV 18,299,724	contains similarity to Saccharomyces cerevisiae transcription factor tau (TFIIIC) subunit 95; SGD:YBR123C
10	T02G6.6	T02G6.6	n/a	chrI 11,821,054	contains similarity to Pfam domain PF07735 F-box associated contains similarity to Interpro domain IPR012885 (F-box associated type 2)
11	nhr-271	T03E6.3	n/a	chrV 16,579,462	C. elegans NHR-271 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
12	gst-44	F13A7.10	n/a	chrV 16,391,643	gst-44 encodes a putative omega-class glutathione transferase (GST; EC 2.5.1.18) which, like its paralog GSTO-1, might have thiol oxidoreductase and dehydroascorbate reductase activity; GST-44 is expressed in excretory cell cytoplasm; other GST-44 paralogs include C02D5.3 and K10F12.4; GST-44 has no obvious function in mass RNAi assays.
13	srgp-1	F12F6.5	n/a	chrIV 11,574,575	C. elegans SRGP-1 protein; contains similarity to Pfam domains PF00620 (RhoGAP domain) , PF00611 (Fes/CIP4 homology domain) contains similarity to Interpro domains IPR001060 (Cdc15/Fes/CIP4), IPR008936 (Rho GTPase activation protein), IPR000198 (RhoGAP)
14	F47E1.1	F47E1.1	n/a	chrX 9,075,645
15	M03E7.2	M03E7.2	n/a	chrV 5,617,970	contains similarity to Plasmodium berghei 58 kDa phosphoprotein (Heat shock-related protein) (HRP).; SW:Q08168
16	F02E11.4	F02E11.4	n/a	chrII 3,276,774	contains similarity to Interpro domain IPR002625 (Smr protein/MutS2 C-terminal)
17	F47B10.9	F47B10.9	n/a	chrX 10,913,178	contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR013089 (Kelch related)
18	F28A10.7	F28A10.7	n/a	chrII 845,493	contains similarity to Interpro domain IPR013090 (Phospholipase A2, active site)
19	M04B2.2	M04B2.2	n/a	chrIV 11,529,284	contains similarity to Pfam domains PF01170 (Putative RNA methylase family UPF0020) , PF02926 (THUMP domain) contains similarity to Interpro domains IPR004114 (THUMP), IPR001091 (Site-specific DNA-methyltransferase (cytosine-N4-specific)), IPR000241 (Putative RNA methylase)
20	C02H6.1	C02H6.1	n/a	chrV 7,389,111	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
21	F47E1.3	F47E1.3	n/a	chrX 9,049,405	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007086 (Zinc finger, C2H2-subtype), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR007087 (Zinc finger, C2H2-type)
22	F36H12.17	F36H12.17	n/a	chrIV 5,277,187
23	str-190	C18B10.7	n/a	chrV 7,477,853	C. elegans STR-190 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	gcy-9	ZK455.2	n/a	chrX 11,335,257	gcy-9 encodes a membrane guanylyl cyclase; gcy-9 expression is reportedly weak and variable in non-neuronal tissues.
25	sri-65	F13A7.8	n/a	chrV 16,387,488	C. elegans SRI-65 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR000883 (Cytochrome c oxidase, subunit I)
26	srh-233	Y113G7A.1	n/a	chrV 20,046,361	C. elegans SRH-233 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
27	F41C6.2	F41C6.2	n/a	chrX 6,870,966
28	ceh-5	C16C2.1	n/a	chrI 9,727,604	ceh-5 encodes a homeodomain protein, similar to the human VENTRAL ANTERIOR HOMEO BOX 2 gene (VAX2; OMIM:604295); CEH-5 is dispensable for viability and gross morphology.
29	M18.6	M18.6	n/a	chrIV 12,122,042	contains similarity to Interpro domain IPR003111 (Peptidase S16, lon N-terminal)
30	taf-11.3	F43D9.5	n/a	chrIII 10,504,535	The taf-11.3 gene encodes an ortholog of human TATA-binding protein associated factor TAF11 (TAFII28, OMIM:600772) that is a component of the TFIID general transcription factor that recognizes the transcription start site; TAF-11.3 is required for proper post-embryonic development.
31	T21H3.5	T21H3.5	n/a	chrV 1,159,760
32	C44E4.5	C44E4.5	n/a	chrI 4,607,929	contains similarity to Pfam domain PF04969 CS domain contains similarity to Interpro domains IPR008978 (HSP20-like chaperone), IPR017447 (CS), IPR007052 (CS domain)
33	C14A4.11	C14A4.11	n/a	chrII 10,606,420	contains similarity to Pfam domain PF06840 Protein of unknown function (DUF1241) contains similarity to Interpro domain IPR009652 (Protein of unknown function DUF1241)
34	srx-137	F09F3.13	n/a	chrV 13,863,436	C. elegans SRX-137 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR002651 (Protein of unknown function DUF32), IPR002229 (Blood group Rhesus C/E and D polypeptide), IPR000276 (GPCR, rhodopsin-like)
35	R17.3	R17.3	n/a	chrIII 10,836,977	R17.3 encodes an ortholog of human retinal pigment epithelium (RPE)-spondin (RPESP).
36	Y17D7B.5	Y17D7B.5	n/a	chrV 18,775,675	contains similarity to Interpro domain IPR006583 (CW)
37	E04F6.10	E04F6.10	n/a	chrII 7,215,446
38	F37B12.3	F37B12.3	n/a	chrII 9,040,539	contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
39	ZK402.1	ZK402.1	n/a	chrX 1,405,182
40	str-134	C05E4.6	n/a	chrV 744,563	C. elegans STR-134 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
41	F19G12.3	F19G12.3	n/a	chrX 1,425,941	contains similarity to Pfam domain PF02170 PAZ domain contains similarity to Interpro domain IPR003100 (Argonaute and Dicer protein, PAZ)
42	K08D9.2	K08D9.2	n/a	chrV 3,228,961	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
43	sptf-3	Y40B1A.4	n/a	chrI 13,362,400	C. elegans SPTF-3 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007086 (Zinc finger, C2H2-subtype), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR003656 (Zinc finger, BED-type predicted), IPR007087 (Zinc finger, C2H2-type)
44	F36D4.1	F36D4.1	n/a	chrV 9,418,520
45	VF39H2L.1	VF39H2L.1	n/a	chrI 8,645,323	contains similarity to Pfam domain PF05739 SNARE domain contains similarity to Interpro domains IPR010989 (t-SNARE), IPR000727 (Target SNARE coiled-coil region)
46	srj-26	ZK262.10	n/a	chrV 18,422,252	C. elegans SRJ-26 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
47	C34B2.9	C34B2.9	n/a	chrI 10,701,670	contains similarity to Interpro domain IPR001904 (Paxillin)
48	F48E8.6	F48E8.6	n/a	chrIII 5,444,858	contains similarity to Pfam domain PF00773 RNB domain contains similarity to Interpro domain IPR001900 (Ribonuclease II and R)
49	srw-94	H06H21.1	2e-22	chrIV 4,815,890	C. elegans SRW-94 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
50	F14D2.5	F14D2.5	n/a	chrII 3,340,796