UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T02H6.7	T02H6.7	6.999999999999999e-104	chrII 683,000	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
2	F02C9.4	F02C9.4	n/a	chrV 3,137,852	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
3	C48B6.4	C48B6.4	n/a	chrI 6,890,348	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
4	ZK84.2	ZK84.2	n/a	chrII 6,015,055
5	F47B3.2	F47B3.2	n/a	chrI 3,970,840	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
6	ZC412.5	ZC412.5	n/a	chrV 14,874,791
7	ZK84.5	ZK84.5	n/a	chrII 6,016,343
8	C09B9.4	C09B9.4	n/a	chrIV 5,032,484	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
9	C17C3.11	C17C3.11	n/a	chrII 5,538,392	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
10	ech-3	F43H9.1	n/a	chrV 8,022,781	C. elegans ECH-3 protein; contains similarity to Pfam domain PF00378 Enoyl-CoA hydratase/isomerase family contains similarity to Interpro domain IPR001753 (Crotonase, core)
11	R07C3.4	R07C3.4	n/a	chrII 934,987	contains similarity to Pfam domain PF00501 AMP-binding enzyme contains similarity to Interpro domain IPR000873 (AMP-dependent synthetase and ligase)
12	C09F9.1	C09F9.1	n/a	chrII 14,698,971	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
13	T22C1.9	T22C1.9	n/a	chrI 7,959,350	contains similarity to Saccharomyces cerevisiae Nuclear Assembly Factor; SGD:YNL124W
14	B0513.6	B0513.6	n/a	chrIV 13,855,821	contains similarity to Pfam domain PF04435 Domain of unknown function (DUF545) contains similarity to Interpro domain IPR006570 (SPK)
15	K02F6.2	K02F6.2	n/a	chrII 2,552,853	contains similarity to Interpro domains IPR002110 (Ankyrin), IPR001357 (BRCT)
16	kel-10	T16H12.6	n/a	chrIII 10,099,930	C. elegans KEL-10 protein; contains similarity to Pfam domains PF01344 (Kelch motif) (5), PF00651 (BTB/POZ domain) , PF07646 (Kelch motif) (2)contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000210 (BTB/POZ-like), IPR006652 (Kelch repeat type 1), IPR011333 (BTB/POZ fold), IPR011498 (Kelch repeat type 2), IPR015916 (Galactose oxidase, beta-propeller), IPR013069 (BTB/POZ), IPR013089 (Kelch related), IPR006651 (Kelch), IPR015915 (Kelch-type beta propeller)
17	tba-6	F32H2.9	n/a	chrI 8,996,289	C. elegans TBA-6 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin/FtsZ family, C-terminal domain) contains similarity to Interpro domains IPR002454 (Gamma tubulin), IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR000158 (Cell division protein FtsZ, N-terminal), IPR008280 (Tubulin/FtsZ, C-terminal)
18	C52E4.7	C52E4.7	n/a	chrV 11,995,047	C52E4.7 encodes a member of the histidine phosphatase superfamily orthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); C52E4.7 is also paralogous to C. elegans F09C12.8, F53B6.7, F55A11.11, and T07F12.1; while no explicit prediction has been made for C52E4.7's activity, it might be catalytically inactive; as loss of C52E4.7 activity results in no obvious defects, the precise role of C52E4.7 in C. elegans development and/or behavior is not yet known.
19	K08C9.1	K08C9.1	n/a	chrI 11,485,648
20	ent-3	K02E11.1	n/a	chrV 14,234,164	C. elegans ENT-3 protein; contains similarity to Pfam domain PF01733 Nucleoside transporter contains similarity to Interpro domain IPR002259 (Delayed-early response protein/equilibrative nucleoside transporter)
21	C04G2.2	C04G2.2	n/a	chrIV 10,091,506	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
22	C15H11.1	C15H11.1	n/a	chrV 14,394,129	contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor, N-terminal), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
23	C37A2.3	C37A2.3	n/a	chrI 6,785,976	contains similarity to Pfam domains PF08028 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02770 (Acyl-CoA dehydrogenase, middle domain) , PF00441 (Acyl-CoA dehydrogenase, C-terminal domain) , PF02771 (Acyl-CoA dehydrogenase, N-terminal domain) contains similarity to Interpro domains IPR013107 (Acyl-CoA dehydrogenase, type 2, C-terminal), IPR006090 (Acyl-CoA oxidase/dehydrogenase, type 1), IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA dehydrogenase/oxidase, central region), IPR006089 (Acyl-CoA dehydrogenase, conserved site), IPR013764 (Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal), IPR009100 (Acyl-CoA dehydrogenase/oxidase, middle and N-terminal), IPR009075 (Acyl-CoA dehydrogenase/oxidase C-terminal), IPR006092 (Acyl-CoA dehydrogenase, N-terminal)
24	F58F12.3	F58F12.3	n/a	chrII 6,390,234
25	ZC581.2	ZC581.2	n/a	chrI 6,656,611	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
26	B0334.10	B0334.10	n/a	chrII 11,518,945	contains similarity to Vaccinia virus TB17L.; TR:Q9JF36
27	D2062.6	D2062.6	n/a	chrII 2,619,582	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
28	K09G1.2	K09G1.2	n/a	chrV 9,590,914	contains similarity to Carnobacterium piscicola Putative ABC transporter PisT.; TR:Q93QC9
29	W06D4.3	W06D4.3	n/a	chrI 9,059,663	contains similarity to Pfam domain PF03114 BAR domain contains similarity to Interpro domain IPR004148 (BAR)
30	F55D12.6	F55D12.6	n/a	chrI 7,902,571	contains similarity to Interpro domains IPR000104 (Antifreeze protein, type I), IPR001865 (Ribosomal protein S2), IPR001859 (Ribosomal protein P2), IPR001778 (Pollen allergen Poa pIX/Phl pVI, C-terminal)
31	C28C12.1	C28C12.1	n/a	chrIV 8,502,192	contains similarity to Interpro domain IPR002217 (Lipoprotein LPP20)
32	C32D5.4	C32D5.4	n/a	chrII 6,322,171
33	Y43F8A.2	Y43F8A.2	n/a	chrV 19,373,855	contains similarity to Homo sapiens Cytokine receptor common beta chain precursor; ENSEMBL:ENSP00000262825
34	C05D2.3	C05D2.3	n/a	chrIII 5,616,047	C05D2.3 generally resembles aromatic-L-amino-acid/L-histidine decarboxylases; however, its predicted protein sequence lacks six residues critical for AADC function; C05D2.3 is dispensable in mass RNAi assays.
35	snf-2	F55H12.1	n/a	chrI 8,873,592	C. elegans SNF-2 protein; contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domain IPR000175 (Sodium:neurotransmitter symporter)
36	F38A5.8	F38A5.8	n/a	chrIV 6,600,170
37	Y45F10B.3	Y45F10B.3	n/a	chrIV 13,593,732	contains similarity to Saccharomyces cerevisiae N-terminal domain appears to be involved in cellular responsiveness to RAS.; SGD:YNL138W
38	T08B6.4	T08B6.4	n/a	chrIV 4,907,072	contains similarity to Interpro domain IPR000694 (Proline-rich region)
39	F26F2.1	F26F2.1	n/a	chrV 20,555,875	contains similarity to Drosophila melanogaster Flybase gene name is CG2839-PA;; FLYBASE:CG2839
40	C24A11.1	C24A11.1	n/a	chrI 5,402,352
41	C08F8.4	C08F8.4	n/a	chrIV 11,158,277	contains similarity to Pfam domain PF03062 MBOAT family contains similarity to Interpro domain IPR004299 (Membrane bound O-acyl transferase, MBOAT)
42	C27B7.6	C27B7.6	n/a	chrIV 8,904,670	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
43	C18E9.8	C18E9.8	n/a	chrII 8,986,939	C18E9.8 is orthologous to the human gene JOINED TO JAZF1 (JJAZ1; OMIM:606245), which when mutated leads to disease.
44	F26D2.10	F26D2.10	n/a	chrV 16,427,124	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
45	F41G3.5	F41G3.5	n/a	chrII 6,748,034	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
46	rnh-1.1	ZK1290.6	n/a	chrII 7,526,915	C. elegans RNH-1.1 protein; contains similarity to Pfam domain PF00075 RNase H contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold), IPR002156 (Ribonuclease H)
47	R102.7	R102.7	n/a	chrIV 10,703,834
48	B0511.11	B0511.11	n/a	chrI 10,649,379
49	F10E9.2	F10E9.2	n/a	chrIII 8,313,421	contains similarity to Interpro domain IPR001841 (Zinc finger, RING-type)
50	W06F12.3	W06F12.3	n/a	chrIII 13,735,661	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)