UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	T02B5.1	T02B5.1	0	chrV 14,164,973	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domains IPR002168 (Lipase, GDXG, active site), IPR002018 (Carboxylesterase, type B)
2	R13H4.3	R13H4.3	n/a	chrV 11,834,560	contains similarity to Pfam domain PF00328 Histidine acid phosphatase contains similarity to Interpro domain IPR000560 (Histidine acid phosphatase)
3	C50B6.7	C50B6.7	n/a	chrV 13,323,656	contains similarity to Pfam domains PF02806 (Alpha amylase, C-terminal all-beta domain) , PF00128 (Alpha amylase, catalytic domain) contains similarity to Interpro domains IPR006046 (Glycoside hydrolase family 13), IPR017853 (Glycoside hydrolase, catalytic core), IPR006048 (Alpha-amylase, C-terminal all beta), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR006047 (Glycosyl hydrolase, family 13, catalytic region), IPR006589 (Glycosyl hydrolase, family 13, subfamily, catalytic region), IPR013780 (Glycosyl hydrolase, family 13, all-beta)
4	C40H1.2	C40H1.2	n/a	chrIII 9,318,561	contains similarity to Eikenella corrodens Cpn60 (Fragment).; TR:Q8KP64
5	T02G5.7	T02G5.7	n/a	chrII 7,076,340	The T02G5.7 gene encodes a homolog of the human gene ACAT1, which when mutated leads to alpha-methylacetoaceticaciduria (OMIM:203750).
6	lys-6	F58B3.3	n/a	chrIV 11,627,398	C. elegans LYS-6 protein; contains similarity to Pfam domain PF01183 Glycosyl hydrolases family 25 contains similarity to Interpro domains IPR017853 (Glycoside hydrolase, catalytic core), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR002053 (Glycoside hydrolase, family 25)
7	hmit-1.1	Y51A2D.4	n/a	chrV 18,520,286	hmit-1.1 encodes one of three C. elegans proton (H+)-dependent myo-inositol transporters; loss of hmit-1.1 activity via large-scale RNAi result in no obvious abnormalities but by homology, HMIT-1.1 is predicted to function as a plasma membrane protein required for the regulated uptake of myo-inositol and thus potentially for regulation of cell signaling and intracellular osmolarity.
8	F55G11.10	F55G11.10	n/a	chrIV 12,949,482	contains similarity to Tritrichomonas foetus Superoxide dismutase 1 (Iron superoxide dismutase) (EC 1.15.1.1)s(Superoxide dismutase [Mn/Fe]).; TR:Q95051
9	K06B9.2	K06B9.2	n/a	chrIV 4,192,443	K06B9.2 encodes a putative UDP-N-acetylglucosamine pyrophosphorylase, paralogous to C36A4.4 and orthologous to human UAP1 (OMIM:602862) and UAP1L1; K06B9.2 is thought to catalyse the fourth step of the hexosamine pathway to UDP-N-acetylglucosamine or UDP-N-acetylgalactosamine; K06B9.2 transcripts are enriched during oogenesis; K06B9.2(RNAi) animals have an osmotically-sensitive embryonic lethal phenotype, presumably because of defects in chitin and eggshell synthesis.
10	R10E8.6	R10E8.6	n/a	chrV 18,262,782	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
11	zig-6	T03G11.8	n/a	chrX 5,187,948	zig-6 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; loss of zig-6 activity in large-scale RNAi screens results in a Clear phenotype; a zig-6::gfp reporter fusion is expressed in anterior and posterior body wall muscle.
12	cyp-35A3	K09D9.2	n/a	chrV 4,023,531	C. elegans CYP-35A3 protein; contains similarity to Pfam domain PF00067 Cytochrome P450 contains similarity to Interpro domains IPR001128 (Cytochrome P450), IPR002401 (Cytochrome P450, E-class, group I), IPR002403 (Cytochrome P450, E-class, group IV), IPR002397 (Cytochrome P450, B-class)
13	rnh-1.3	C04F12.9	n/a	chrI 9,710,453	C. elegans RNH-1.3 protein; contains similarity to Pfam domain PF00075 RNase H contains similarity to Interpro domains IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold), IPR002156 (Ribonuclease H)
14	pgl-2	B0523.3	n/a	chrIII 8,672,707	pgl-2 encodes a novel protein of 532 amino acids that, in C. elegans, is one of three PGL protein family members; PGL-2 associates with P granules during postembryonic development; PGL-2 interacts with PGL-1, an additional P granule component, in yeast two-hybrid assays, but neither protein is required for proper localization of the other.
15	B0495.2	B0495.2	n/a	chrII 7,700,550	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR008351 (JNK MAP kinase), IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core)
16	F59D6.3	F59D6.3	n/a	chrV 3,026,073	contains similarity to Pfam domain PF00026 Eukaryotic aspartyl protease contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR001461 (Peptidase A1)
17	clec-54	F08H9.8	n/a	chrV 14,477,911	C. elegans CLEC-54 protein; contains similarity to Pfam domains PF00431 (CUB domain) (2), PF00059 (Lectin C-type domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
18	cut-4	E04D5.3	n/a	chrII 10,437,905	C. elegans CUT-4 protein; contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR001507 (Endoglin/CD105 antigen)
19	col-104	F58F6.1	n/a	chrIV 1,354,497	C. elegans COL-104 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR001150 (Formate C-acetyltransferase glycine radical), IPR008160 (Collagen triple helix repeat)
20	D1086.6	D1086.6	n/a	chrV 14,080,757	contains similarity to Xenopus laevis Integumentary mucin C.1 (FIM-C.1) (Fragment).; SW:Q05049
21	lys-5	F58B3.2	n/a	chrIV 11,624,888	C. elegans LYS-5 protein; contains similarity to Pfam domain PF01183 Glycosyl hydrolases family 25 contains similarity to Interpro domains IPR017853 (Glycoside hydrolase, catalytic core), IPR013781 (Glycoside hydrolase, subgroup, catalytic core), IPR002053 (Glycoside hydrolase, family 25)
22	fbxa-151	ZC47.7	n/a	chrIII 1,266,254	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
23	F10E7.3	F10E7.3	n/a	chrII 7,124,926
24	C06E8.5	C06E8.5	n/a	chrIII 7,003,767	contains similarity to Pfam domain PF02886 LBP / BPI / CETP family, C-terminal domain contains similarity to Interpro domain IPR001124 (Lipid-binding serum glycoprotein)
25	R11A8.1	R11A8.1	n/a	chrIV 10,356,114	contains similarity to Homo sapiens Hypothetical protein; ENSEMBL:ENSP00000299601
26	ZC204.12	ZC204.12	n/a	chrII 1,656,785	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
27	F25H5.6	F25H5.6	n/a	chrI 9,159,313	contains similarity to Pfam domain PF08561 Mitochondrial ribosomal protein L37 contains similarity to Interpro domain IPR013870 (Ribosomal protein L37, mitochondrial)
28	elo-5	F41H10.7	n/a	chrIV 5,375,925	The elo-5 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase; ELO-5 is required for normally rapid growth and for normal fatty acid composition.
29	F55F3.4	F55F3.4	n/a	chrX 13,787,328	contains similarity to Interpro domain IPR016112 (Major coat protein hexon/vp54/p3, dsDNA virus)
30	math-22	C46F9.1	n/a	chrII 1,905,746	C. elegans MATH-22 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
31	H41C03.3	H41C03.3	n/a	chrII 5,848,949	contains similarity to Pfam domain PF02485 Core-2/I-Branching enzyme contains similarity to Interpro domain IPR003406 (Glycosyl transferase, family 14)
32	R03G8.6	R03G8.6	n/a	chrX 13,097,423	contains similarity to Pfam domain PF01433 Peptidase family M1 contains similarity to Interpro domains IPR014782 (Peptidase M1, membrane alanine aminopeptidase, N-terminal), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR001930 (Peptidase M1, membrane alanine aminopeptidase)
33	R07E4.3	R07E4.3	n/a	chrX 5,953,576	contains similarity to Pfam domain PF02939 UcrQ family contains similarity to Interpro domain IPR004205 (UcrQ)
34	col-146	T06E4.6	n/a	chrV 9,630,449	C. elegans COL-146 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008160 (Collagen triple helix repeat)
35	nspb-4	F38A5.10	n/a	chrIV 6,598,366	C. elegans NSPB-4 protein; contains similarity to Pfam domain PF07312 Protein of unknown function (DUF1459) contains similarity to Interpro domain IPR009924 (Protein of unknown function DUF1459)
36	dct-11	W06B11.3	n/a	chrX 5,838,856	C. elegans DCT-11 protein ;
37	K09F6.3	K09F6.3	n/a	chrII 2,258,704	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
38	F23F1.2	F23F1.2	n/a	chrII 34,690	contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand)
39	H25K10.5	H25K10.5	n/a	chrIV 16,231,750	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domains IPR001940 (Peptidase S1C, HrtA/DegP2/Q/S), IPR000494 (EGF receptor, L domain)
40	C47E8.4	C47E8.4	n/a	chrV 14,684,638	contains similarity to Pfam domain PF04921 XAP5 protein contains similarity to Interpro domains IPR007005 (XAP5 protein), IPR000533 (Tropomyosin)
41	C44C8.4	C44C8.4	n/a	chrIV 891,926	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
42	F07C6.2	F07C6.2	n/a	chrIV 12,791,374	contains similarity to Amblyomma hebraeum 9.8 kDa basic protein.; TR:Q9GPM1
43	ZK836.2	ZK836.2	n/a	chrV 12,199,854	contains similarity to Pfam domains PF02779 (Transketolase, pyrimidine binding domain) , PF00676 (Dehydrogenase E1 component) contains similarity to Interpro domains IPR011603 (2-oxoglutarate dehydrogenase, E1 component), IPR005475 (Transketolase, central region), IPR001017 (Dehydrogenase, E1 component)
44	F56G4.1	F56G4.1	n/a	chrI 11,343,556	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
45	C34C12.7	C34C12.7	n/a	chrIII 3,485,435
46	K04C2.5	K04C2.5	n/a	chrIII 6,891,261
47	K02C4.3	K02C4.3	n/a	chrII 8,083,916	contains similarity to Pfam domain PF00443 Ubiquitin carboxyl-terminal hydrolase contains similarity to Interpro domain IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
48	C44C8.1	C44C8.1	n/a	chrIV 904,383	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
49	zim-3	T07G12.11	n/a	chrIV 10,559,796	zmp-3 encodes a protein with two C-terminal noncanonical C2H2 zinc-fingers whose paralogs include HIM-8, ZIM-1/-2, and C02F5.12; ZIM-3 is specifically required for homolog pairing, synapsis, and segregation of chromosomes I and IV during meiosis; zim-3(tm2303) oocytes ending prophase have ~4 bivalents and ~4 univalents, the latter of which are consistently chromosomes I and IV; ZIM-3 associates with the right end of chromosome I and the left end of chromosome IV, which may indicate an association with their pairing centers; while the C-terminal region of ZIM-3 most closely resembles those of its orthologs in other Caenorhabditis species, its N-terminal region instead most closely resembles those of its paralogs in C. elegans, indicating coevolving, species-specific functions; ZIM-3 foci, like HIM-8 foci, associate with the nuclear envelope during meiotic prophase; zim-3 mutants also have some defective segregation of the X chromosome (yielding a Him phenotype), but this may be an indirect effect of autosomal asynapsis.
50	C16A11.3	C16A11.3	n/a	chrII 4,231,931	contains similarity to Pfam domains PF04435 (Domain of unknown function (DUF545)) , PF00069 (Protein kinase domain) , PF00628 (PHD-finger) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR006570 (SPK), IPR002290 (Serine/threonine protein kinase), IPR001965 (Zinc finger, PHD-type), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011011 (Zinc finger, FYVE/PHD-type)