UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	srh-24	R10D12.11	0	chrV 13,959,859	C. elegans SRH-24 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	srh-212	T22F3.6	4.999999999999999e-19	chrV 3,596,155	C. elegans SRH-212 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR001463 (Sodium:alanine symporter), IPR003002 (7TM chemoreceptor, subfamily 1)
4	C54C8.3	C54C8.3	n/a	chrI 12,447,783	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
5	C08A9.3	C08A9.3	n/a	chrX 17,089,713	contains similarity to Homo sapiens SIDT1 protein; ENSEMBL:ENSP00000377416
6	K03H1.8	K03H1.8	n/a	chrIII 9,945,970	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
7	T26H2.5	T26H2.5	n/a	chrV 19,231,365	contains similarity to Pfam domain PF00569 Zinc finger, ZZ type contains similarity to Interpro domain IPR000433 (Zinc finger, ZZ-type)
8	R06A10.1	R06A10.1	n/a	chrI 1,087,211	contains similarity to Interpro domain IPR016196 (MFS general substrate transporter)
9	F28F9.2	F28F9.2	n/a	chrIV 3,840,668
10	sra-3	AH6.7	n/a	chrII 9,539,969	C. elegans SRA-3 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
11	nhr-195	F59E11.10	n/a	chrV 8,971,529	C. elegans NHR-195 protein; contains similarity to Pfam domain PF00105 Zinc finger, C4 type (two domains) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
12	T08G3.7	T08G3.7	n/a	chrV 16,464,369	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
13	fbxa-7	T20H9.1	n/a	chrIII 2,250,698	C. elegans FBXA-7 protein; contains similarity to Pfam domains PF01827 (FTH domain) , PF00646 (F-box domain) contains similarity to Interpro domains IPR002900 (Protein of unknown function DUF38, Caenorhabditis species), IPR001810 (Cyclin-like F-box)
14	C25A1.15	C25A1.15	n/a	chrI 10,197,447	contains similarity to Human herpesvirus 6 Hypothetical protein.; TR:Q89893
15	F55G11.1	F55G11.1	n/a	chrIV 12,945,773	contains similarity to Magnetospirillum magnetotacticum MagA protein.; TR:Q8GRF6
16	C03B1.4	C03B1.4	n/a	chrX 6,365,064
17	cpb-1	C40H1.1	n/a	chrIII 9,323,513	cpb-1 encodes a cytoplasmic polyadenylation element binding (CPEB) protein homolog involved in two steps of spermatogenesis; two CPEB proteins have distinct functions in spermatogenesis, with FOG-1 specifying sperm cell fate, and CPB-1 conversely executing that decision, being required for progression through meiosis; cpb-1(RNAi) spermatocytes fail to undergo meiotic cell divisions; CPB-1 protein is present in the germ line just prior to overt spermatogenesis, but once sperm differentiation begins, CPB-1 disappears; CPB-1 physically interacts with EBF, which, like CPEB, regulates genes by binding the 3' UTRs of mRNAs; while CPB-1 is required for spermatogenesis, it is dispensable for oogenesis; this is in contrast to CPEBs in vertebrates (Xenopus), arthropods (Drosophila), and molluscs (Spisula), which all participate in oogenesis.
18	ins-32	Y8A9A.6	n/a	chrII 3,803,141	ins-32 encodes an insulin-like peptide of the insulin superfamily of proteins (OMIM:176730, 147440); INS-32 is one of 38 insulin-like peptides in C. elegans and the precise role of INS-32 in C. elegans development is not yet clear as loss of INS-32 function does not result in a mutant phenotype.
19	srd-31	F07C4.8	n/a	chrV 7,634,059	C. elegans SRD-31 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
20	E03H4.11	E03H4.11	n/a	chrI 12,433,962	contains similarity to Pfam domain PF01762 Galactosyltransferase contains similarity to Interpro domain IPR002659 (Glycosyl transferase, family 31)
21	F49H6.12	F49H6.12	n/a	chrV 17,021,153	contains similarity to Phasianus colchicus Gag polyprotein (Fragment).; TR:Q9I9T0
22	K02F6.7	K02F6.7	n/a	chrII 2,527,240
23	srh-180	F57G8.1	4.999999999999999e-19	chrV 16,318,159	C. elegans SRH-180 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
24	C07D8.3	C07D8.3	n/a	chrX 7,361,807
25	acc-3	F55D10.5	n/a	chrX 4,725,216	C. elegans ACC-3 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR001390 (Gamma-aminobutyric-acid A receptor, alpha subunit), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
26	sra-23	T06G6.1	n/a	chrI 12,704,070	C. elegans SRA-23 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
27	dhc-1	T21E12.4	n/a	chrI 4,394,384	dhc-1 encodes a cytoplasmic dynein heavy chain homolog required in one-cell embryos for pronuclear migration, centrosome separation, centrosome proximity to the male pronucleus, and mitotic spindle orientation, suggesting that DHC-1 helps position the microtubule organizing center; DHC-1 genetically interacts with SPD-5, a coiled-coil centrosomal protein.
28	C03B1.3	C03B1.3	n/a	chrX 6,366,380
29	R08E5.4	R08E5.4	n/a	chrV 3,769,592
30	T28B4.2	T28B4.2	n/a	chrX 6,582,753
31	Y44F5A.1	Y44F5A.1	n/a	chrIII 4,246,236	contains similarity to Interpro domains IPR017422 (WD repeat protein 55), IPR011046 (WD40 repeat-like), IPR001680 (WD40 repeat), IPR015943 (WD40/YVTN repeat-like)
32	agr-1	F41G3.12	n/a	chrII 6,767,868	agr-1 encodes a large (1396-residue) putative agrin, orthologous to human AGRIN (OMIM:103320), EGFLAM, and Q9NQ15; AGR-1 is expressed in buccal epithelium and deposited in pharyngeal basal epithelium; AGR-1 is also expressed in IL1 neurons, distal tip cells, and intestine; an AGR-1 fragment can cluster vertebrate dystroglycan in cell culture; agr-1(eg1770) mutations show no obvious phenotype, including levimasole resistance, and do not enhance other mutations perturbing acetylcholine signalling, the dystrophin-glycoprotein-complex, muscle cell differentiation, or the extracellular matrix.
33	K06A1.3	K06A1.3	n/a	chrII 6,442,625	contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Endoglin/CD105 antigen)
34	F46F5.8	F46F5.8	n/a	chrII 821,517
35	F14F8.9	F14F8.9	n/a	chrV 16,668,104	contains similarity to Interpro domain IPR002625 (Smr protein/MutS2 C-terminal)
36	T08G3.6	T08G3.6	n/a	chrV 16,446,543	contains similarity to Interpro domain IPR008975 ()
37	str-60	T06C12.1	n/a	chrV 15,898,679	C. elegans STR-60 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
38	F54E4.2	F54E4.2	n/a	chrX 14,627,172	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
39	M02B7.5	M02B7.5	n/a	chrIV 3,813,489	contains similarity to Pfam domains PF00612 (IQ calmodulin-binding motif) , PF01369 (Sec7 domain) contains similarity to Interpro domains IPR011993 (Pleckstrin homology-type), IPR000904 (SEC7-like)
40	gpa-15	M04C7.1	n/a	chrI 8,533,150	gpa-15 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases; it is expressed in ADL, ASH, ASK, PHA, PHB, the distal tip cell, the anchor cell, and many male-specific neurons.
41	mif-1	Y56A3A.3	n/a	chrIII 11,848,712	C. elegans MIF-1 protein; contains similarity to Pfam domain PF01187 Macrophage migration inhibitory factor (MIF) contains similarity to Interpro domains IPR014347 (Tautomerase), IPR001398 (Macrophage migration inhibitory factor)
42	dpy-28	Y39A1B.3	n/a	chrIII 10,770,127	dpy-28 encodes a non-SMC condensin subunit homolog, similar to XCAP-D2 in Xenopus, Cnd1 in S. pombe, and Ycs4p in S. cerevisiae, that is required for negative, chromosome-wide regulation of X-chromosomal genes in XX but not XO animals (dosage compensation), and for some undetermined aspect of body morphogenesis; DPY-28 is part of a multiprotein 'dosage compensation' complex with DPY-26, DPY-27 and MIX-1.
43	str-76	C01B4.10	n/a	chrV 2,514,913	C. elegans STR-76 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
44	Y62H9A.1	Y62H9A.1	n/a	chrX 11,876,371	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
45	F56C3.3	F56C3.3	n/a	chrX 1,358,147
46	R05C11.2	R05C11.2	n/a	chrIV 2,058,493	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
47	F35D11.1	F35D11.1	n/a	chrII 4,627,370
48	W03D2.9	W03D2.9	n/a	chrIV 4,074,075	contains similarity to Interpro domain IPR009151 (Basigin)
49	T05A7.3	T05A7.3	n/a	chrII 4,676,002	contains similarity to Pfam domain PF00431 CUB domain contains similarity to Interpro domain IPR000859 (CUB)
50	clec-46	F07C4.9	n/a	chrV 7,637,516	C. elegans CLEC-46 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)