UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	R05D7.3	R05D7.3	0	chrI 12,169,337	contains similarity to Interpro domain IPR000085 (Bacterial DNA recombination protein, RuvA)
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	ZC482.7	ZC482.7	n/a	chrIII 12,752,251	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
4	F11D11.6	F11D11.6	n/a	chrV 18,752,774	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
5	K04A8.2	K04A8.2	n/a	chrV 6,563,097	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
6	C53A5.11	C53A5.11	n/a	chrV 14,563,580	contains similarity to Pfam domains PF01344 (Kelch motif) (5), PF07646 (Kelch motif) (3)contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000209 (Peptidase S8 and S53, subtilisin, kexin, sedolisin), IPR006652 (Kelch repeat type 1), IPR011498 (Kelch repeat type 2), IPR015916 (Galactose oxidase, beta-propeller), IPR013089 (Kelch related), IPR006651 (Kelch), IPR015915 (Kelch-type beta propeller)
7	srj-38	T02B11.5	n/a	chrV 883,302	C. elegans SRJ-38 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
8	srv-34	F13A7.3	n/a	chrV 16,373,569	C. elegans SRV-34 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000355 (Chemokine receptor)
9	H03G16.1	H03G16.1	n/a	chrX 15,054,187	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
10	E02H4.5	E02H4.5	n/a	chrX 14,254,507	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8IBC6
11	mbr-1	T01C1.2	n/a	chrX 10,720,732	C. elegans MBR-1 protein; contains similarity to Pfam domain PF05225 helix-turn-helix, Psq domain contains similarity to Interpro domains IPR011526 (Helix-turn-helix, Psq-like), IPR007889 (Helix-turn-helix, Psq)
12	T03F7.6	T03F7.6	n/a	chrV 11,295,604	contains similarity to Interpro domain IPR001036 (Acriflavin resistance protein)
13	osm-12	Y75B8A.12	n/a	chrIII 12,196,633	C. elegans OSM-12 protein; contains similarity to Interpro domain IPR016575 (Bardet-Biedl syndrome 7 protein)
14	F54D5.11	F54D5.11	n/a	chrII 11,541,574	contains similarity to Pfam domain PF02186 TFIIE beta subunit core domain contains similarity to Interpro domains IPR011991 (Winged helix repressor DNA-binding), IPR016656 (Transcription initiation factor IIE, beta subunit), IPR003166 (Transcription factor TFIIE beta subunit, core)
15	str-119	C13B7.5	n/a	chrV 2,427,301	C. elegans STR-119 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
16	tag-263	C11E4.3	n/a	chrX 9,590,518	C. elegans TAG-263 protein; contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
17	fip-5	F41E7.4	n/a	chrX 10,302,828	C. elegans FIP-5 protein; contains similarity to Interpro domain IPR000480 (Glutelin)
18	F52G3.4	F52G3.4	n/a	chrX 16,950,151
19	T19C3.6	T19C3.6	n/a	chrIII 629,578
20	R52.5	R52.5	n/a	chrII 2,109,416	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
21	puf-4	M4.2	n/a	chrIV 3,207,566	C. elegans PUF-4 protein; contains similarity to Pfam domain PF00806 Pumilio-family RNA binding repeat contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR001313 (Pumilio RNA-binding region), IPR016024 (Armadillo-type fold)
22	srh-118	K03D7.6	n/a	chrV 17,495,205	C. elegans SRH-118 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
23	hda-4	C10E2.3	n/a	chrX 16,737,045	hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth; interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells
24	srh-38	C31B8.11	n/a	chrV 2,921,646	C. elegans SRH-38 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
25	F49C5.4	F49C5.4	n/a	chrII 12,539,002	contains similarity to Pfam domain PF00069 (Eukaryotic protein kinase domain)
26	C17H1.3	C17H1.3	n/a	chrI 13,105,263	contains similarity to Trichomonas vaginalis G3 Smooth muscle caldesmon, putative.; TR:A2FBI1
27	srbc-58	R09E12.2	n/a	chrV 776,135	C. elegans SRBC-58 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
28	C01G5.7	C01G5.7	n/a	chrIV 6,518,588
29	R07G3.8	R07G3.8	n/a	chrII 7,619,307	contains similarity to Pfam domain PF07159 Protein of unknown function (DUF1394) contains similarity to Interpro domain IPR009828 (Protein of unknown function DUF1394)
30	srbc-18	C45H4.6	n/a	chrV 2,169,987	C. elegans SRBC-18 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
31	knl-1	C02F5.1	n/a	chrIII 8,252,399	knl-1 encodes a novel acidic protein with a coiled-coil region at its C-terminus; KNL-1 is an essential kinetochore component that is required for proper spindle elongation and chromosome separation, and in the kinetochore assembly pathway, plays a key role in linking the initiation of kinetochore formation with the construction of a functional microtubule-binding interface; in the assembly pathway, KNL-1 functions downstream of the DNA-proximal kinetochore components CeCENP-A/HCP-3 and CeCENP-B/HCP-4 and upstream of the outer kinetochore components HIM-10/Nuf2p, NDC-80/HEC1, CeBUB-1, HCP-1, and CeCLASP2/CLS-2; in expression studies in the one-cell embryo, KNL-1 localizes to kinetochores throughout mitosis.
32	Y51H1A.7	Y51H1A.7	n/a	chrII 13,897,024	contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR000783 (RNA polymerase, subunit H/Rpb5 C-terminal)
33	R05A10.5	R05A10.5	n/a	chrIV 14,169,839	contains similarity to Interpro domain IPR000884 (Thrombospondin, type I)
34	R10D12.7	R10D12.7	n/a	chrV 13,950,209	contains similarity to Pfam domain PF01679 Uncharacterized protein family UPF0057 contains similarity to Interpro domain IPR000612 (Protein of unknown function UPF0057)
35	sru-11	Y45F10B.6	n/a	chrIV 13,586,085	C. elegans SRU-11 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domain IPR003839 (Protein of unknown function DUF215)
36	brc-2	T07E3.5	n/a	chrIII 6,901,783	brc-2 encodes a BRC domain-containing protein that is homologous to human BRCA2 which when mutated leads to early-onset breast cancer 2 or hereditary male breast cancer (OMIM:600185); in C. elegans, BRC-2 activity is essential for RAD-51-mediated repair of meiotic and radiation-induced double-strand breaks (DSBs); BRC-2 physically interacts with RAD-51 and single-stranded DNA and is required for proper localization of RAD-51 to sites of DNA damage and stabilization of RAD-51-DNA filaments; BRC-2 can also promote RAD-51-independent DSB repair via single-strand annealing (SSA) when the homologous recombination (HR) and nonhomologous end joining pathways (NHEJ) are compromised; in nonirradiated animals, BRC-2 is seen at diffuse, low levels in germline nuclei, but upon radiation treatment BRC-2 localizes to discrete foci that coincide with presumptive sites of DNA damage.
37	srz-96	Y68A4A.6	n/a	chrV 17,200,545	C. elegans SRZ-96 protein; contains similarity to Interpro domain IPR000418 (Ets)
38	C53B7.6	C53B7.6	n/a	chrX 6,868,654
39	R08C7.11	R08C7.11	n/a	chrIV 4,454,848
40	F37H8.2	F37H8.2	n/a	chrII 11,173,534	contains similarity to Saccharomyces cerevisiae Structural maintenance of chromosomes (SMC) protein; SGD:YOL034W
41	C01C4.2	C01C4.2	n/a	chrX 3,717,428
42	K02D7.5	K02D7.5	n/a	chrIV 309,359	contains similarity to Pfam domain PF03083 MtN3/saliva family contains similarity to Interpro domain IPR004316 (MtN3 and saliva related transmembrane protein)
43	srh-235	F08E10.1	n/a	chrV 17,470,910	C. elegans SRH-235 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
44	F11A1.2	F11A1.2	n/a	chrX 10,658,016
45	srt-65	C03A7.10	n/a	chrV 5,171,907	C. elegans SRT-65 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
46	F26A1.7	F26A1.7	n/a	chrIII 4,819,598
47	sre-45	F54F11.3	n/a	chrII 13,520,326	C. elegans SRE-45 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
48	F32D8.1	F32D8.1	n/a	chrV 10,882,070	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
49	ikb-1	C04F12.3	n/a	chrI 9,687,053	ikb-1 encodes an ortholog of human BCL3 (OMIM:109560) that physically interacts with the checkpoint protein MRT-2; ikb-1(nr2019) and ikb-1(nr2027) mutants display no obvious phenotype other than shortened lifespan; mutation of BCL3 is frequently associated with recurring translocations found in the neoplastic cells of patients with chronic lymphocytic leukemia, and has been implicated in cell cycle control (perhaps via apoptosis).
50	F11D11.4	F11D11.4	n/a	chrV 18,762,417	contains similarity to Pfam domain PF03409 Protein of unknown function (DUF274) contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274)