UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	R05D7.2	R05D7.2	3.9999999999999997e-168	chrI 12,166,865	contains similarity to Pfam domain PF04435 Domain of unknown function (DUF545) contains similarity to Interpro domain IPR006570 (SPK)
2	skr-9	C52D10.7	n/a	chrIV 17,163,837	skr-9 encodes a homolog of Skp1 in S. cerevisiae, a component of the SCF (Skp1, Cullin, F-box) ubiquitin-ligase complex that regulates ubiquitin-mediated protein degradation; SKR-9 is required for posterior body morphogenesis, embryonic and larval development, and postembryonic cell proliferation.
3	C55B7.10	C55B7.10	n/a	chrI 6,502,907	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
4	Y6B3B.7	Y6B3B.7	n/a	chrI 13,748,017	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
5	C25G4.7	C25G4.7	n/a	chrIV 12,457,730	contains similarity to Pfam domain PF06887 Protein of unknown function (DUF1265) contains similarity to Interpro domains IPR011333 (BTB/POZ fold), IPR009676 (Protein of unknown function DUF1265)
6	R04B5.1	R04B5.1	n/a	chrV 10,078,069	contains similarity to Culex nigripalpus baculovirus Putative 33 kDa early protein (CUN014 similar to AcMNPV ORF92).; TR:Q99GP2
7	Y69H2.11	Y69H2.11	n/a	chrV 18,644,329	contains similarity to Pfam domains PF00008 (EGF-like domain) (6), PF00858 (Amiloride-sensitive sodium channel) contains similarity to Interpro domains IPR001438 (EGF-like, type 2), IPR000742 (EGF-like, type 3), IPR006209 (EGF-like), IPR006210 (EGF), IPR002049 (EGF-like, laminin), IPR001881 (EGF-like calcium-binding), IPR013032 (EGF-like region, conserved site), IPR001873 (Na+ channel, amiloride-sensitive)
8	Y113G7B.15	Y113G7B.15	n/a	chrV 20,226,741	contains similarity to Pfam domains PF08246 (Cathepsin propeptide inhibitor domain (I29)) , PF00112 (Papain family cysteine protease) contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000169 (Peptidase, cysteine peptidase active site), IPR013201 (Proteinase inhibitor I29, cathepsin propeptide), IPR000668 (Peptidase C1A, papain C-terminal)
9	F28H1.5	F28H1.5	n/a	chrI 3,979,010
10	T02H6.6	T02H6.6	n/a	chrII 683,947
11	C34G6.3	C34G6.3	n/a	chrI 5,897,020	contains similarity to Interpro domain IPR005819 (Histone H5)
12	ZC132.2	ZC132.2	n/a	chrV 4,311,620
13	F21F8.5	F21F8.5	n/a	chrV 8,265,454
14	F26A1.3	F26A1.3	n/a	chrIII 4,827,878	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR017442 (Serine/threonine protein kinase-related)
15	tsp-19	D2092.7	n/a	chrI 6,617,424	C. elegans TSP-19 protein; contains similarity to Interpro domain IPR001991 (Sodium:dicarboxylate symporter)
16	kin-31	B0523.1	n/a	chrIII 8,672,572	kin-31 encodes a predicted tyrosine protein kinase expressed in the nucleus and cytoplasm of body-wall muscle cells; the expression of kin-31 was experimentally verified by RT-PCR.
17	skr-20	R12H7.5	n/a	chrX 13,223,155	The skr-20 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-20(RNAi) animals are at least superficially normal.
18	C18H2.1	C18H2.1	n/a	chrIII 7,667,218	contains similarity to Pfam domains PF02206 (Domain of unknown function) (2), PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) (2)contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
19	spe-19	Y113G7A.10	n/a	chrV 20,039,581	C. elegans SPE-19 protein ;
20	Y49A3A.4	Y49A3A.4	n/a	chrV 14,357,603	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
21	F20D6.1	F20D6.1	n/a	chrV 8,191,303	contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
22	M195.4	M195.4	n/a	chrII 8,376,915	contains similarity to Homo sapiens Putative uncharacterized protein (Fragment); ENSEMBL:ENSP00000333119
23	F49F1.6	F49F1.6	n/a	chrIV 4,122,198	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
24	F45C12.1	F45C12.1	n/a	chrII 1,740,047	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domains IPR000494 (EGF receptor, L domain), IPR007087 (Zinc finger, C2H2-type)
25	ZK849.5	ZK849.5	n/a	chrI 14,202,318	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
26	F59A3.8	F59A3.8	n/a	chrI 5,523,890	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
27	K06A4.6	K06A4.6	n/a	chrV 9,480,821	contains similarity to Saccharomyces cerevisiae Synaptojanin-like protein; SGD:YOR109W
28	F19B6.3	F19B6.3	n/a	chrIV 12,327,905	contains similarity to Lactococcus lactis Unknown protein.; TR:Q9CF64
29	K09F6.4	K09F6.4	n/a	chrII 2,263,817	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
30	W04E12.4	W04E12.4	n/a	chrV 19,740,082	contains similarity to Saccharomyces cerevisiae Kelch-repeat protein, similar to Kel1 and Kel2; SGD:YPL263C
31	fbxa-223	ZC513.10	n/a	chrV 8,064,176	fbxa-223 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-223 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
32	srz-1	F14F8.3	n/a	chrV 16,676,674	srz-1 encodes a predicted seven-pass G protein-coupled receptor; as loss of srz-1 activity via large-scale RNAi screens results in no obvious abnormalities, the precise role of SRZ-1 in C. elegans development and/or behavior is not yet known.
33	ZK418.6	ZK418.6	n/a	chrIII 7,076,490	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000694 (Proline-rich region), IPR000276 (GPCR, rhodopsin-like)
34	C14B1.3	C14B1.3	n/a	chrIII 3,704,316	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
35	M70.2	M70.2	n/a	chrIV 2,243,378	contains similarity to Homo sapiens Serine/threonine-protein kinase PRP4 homolog; ENSEMBL:ENSP00000283003
36	R09B5.12	R09B5.12	n/a	chrV 1,455,855	contains similarity to Interpro domains IPR011583 (Chitinase II), IPR017853 (Glycoside hydrolase, catalytic core)
37	Y41C4A.1	Y41C4A.1	n/a	chrIII 11,648,712	contains similarity to Oryza sativa Putative aspartate kinase.; TR:Q851Z6
38	srw-72	F20E11.6	n/a	chrV 17,467,788	C. elegans SRW-72 protein ;
39	R11.2	R11.2	n/a	chrX 16,184,757	contains similarity to Homo sapiens Chromosome-associated kinesin KIF4A; ENSEMBL:ENSP00000262784
40	W03D8.3	W03D8.3	n/a	chrI 2,821,478	contains similarity to Interpro domain IPR000694 (Proline-rich region)
41	K05F1.1	K05F1.1	n/a	chrII 5,802,499	contains similarity to Pfam domain PF01666 DX module contains similarity to Interpro domain IPR002593 (Protein of unknown function DX)
42	Y56A3A.9	Y56A3A.9	n/a	chrIII 11,884,269	contains similarity to Interpro domains IPR015706 (RNA-directed DNA polymerase (reverse transcriptase), related), IPR000694 (Proline-rich region)
43	W03F9.3	W03F9.3	n/a	chrV 132,775
44	F22B5.5	F22B5.5	n/a	chrII 8,453,880	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domain IPR009658 (Protein of unknown function DUF1248)
45	R01H2.2	R01H2.2	n/a	chrIII 7,057,468	contains similarity to Pfam domain PF03761 Domain of unknown function (DUF316) contains similarity to Interpro domains IPR005514 (Protein of unknown function DUF316), IPR009003 (Peptidase, trypsin-like serine and cysteine)
46	R05A10.7	R05A10.7	n/a	chrIV 14,161,499	contains similarity to Pfam domain PF07801 Protein of unknown function (DUF1647) contains similarity to Interpro domain IPR012444 (Protein of unknown function DUF1647)
47	Y40B1A.3	Y40B1A.3	n/a	chrI 13,356,226	contains similarity to Interpro domains IPR006077 (Vinculin/alpha-catenin), IPR000381 (Inhibin, beta B subunit), IPR000694 (Proline-rich region)
48	Y54E2A.5	Y54E2A.5	n/a	chrII 14,756,797
49	grd-8	C37C3.4	n/a	chrV 7,843,402	grd-8 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central low-complexity proline-rich domain, and a C-terminal Ground domain; GRD-8 is expressed in larval intestine and neurons; the grd-8 gene is directly bound by DAF-12 and requires DAF-12 for full transcription; GRD-8's Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-8 is weakly required for normal molting; GRD-8 is also required for normal adult alae formation, growth to full size, locomotion, and male tail development; all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
50	sfxn-1.4	C47D12.3	n/a	chrII 11,680,034	C. elegans SFXN-1.4 protein; contains similarity to Pfam domain PF03820 Tricarboxylate carrier contains similarity to Interpro domain IPR004686 (Tricarboxylate/iron carrier)