UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	R03G8.3	R03G8.3	0	chrX 13,092,699	contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domain IPR004245 (Protein of unknown function DUF229)
2	C41G6.6	C41G6.6	n/a	chrV 15,222,374	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
3	R07A4.4	R07A4.4	n/a	chrX 10,753,200	contains similarity to Pfam domain PF00024 PAN domain contains similarity to Interpro domains IPR000884 (Thrombospondin, type I), IPR003609 (Apple-like), IPR003014 (N/apple PAN), IPR008266 (Tyrosine protein kinase, active site)
4	nhr-266	F56H1.2	n/a	chrI 5,738,931	C. elegans NHR-266 protein; contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR003125 (Protein of unknown function WSN)
5	R07C3.3	R07C3.3	n/a	chrII 939,772	contains similarity to Pfam domain PF02485 Core-2/I-Branching enzyme contains similarity to Interpro domain IPR003406 (Glycosyl transferase, family 14)
6	puf-9	W06B11.2	n/a	chrX 5,843,741	The puf-9 gene encodes a predicted RNA binding protein orthologous to Drosophila PUMILIO and human PUMILIO 2 (OMIM:607205); PUF-9 is required for normal locomotion and fluid balance, and is expressed primarily in somatic tissues; PUF-9 contains a glutamine/asparagine-rich domain.
7	R13.3	R13.3	n/a	chrIV 10,830,875	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
8	T14G8.4	T14G8.4	n/a	chrX 12,862,943	contains similarity to Mus musculus Gamma-tubulin complex component GCP5 homolog.; TR:Q8BKN5
9	C18H9.1	C18H9.1	n/a	chrII 6,699,771
10	C30E1.6	C30E1.6	n/a	chrX 16,916,238
11	F54E2.4	F54E2.4	n/a	chrV 2,806,913	contains similarity to Pfam domains PF00047 (Immunoglobulin domain) , PF07679 (Immunoglobulin I-set domain) (3)contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR009134 (Vascular endothelial growth factor receptor, VEGFR, N-terminal), IPR013783 (Immunoglobulin-like fold), IPR007110 (Immunoglobulin-like), IPR003599 (Immunoglobulin subtype), IPR013151 (Immunoglobulin)
12	F16B4.3	F16B4.3	n/a	chrV 1,597,417	contains similarity to Pfam domain PF06918 Protein of unknown function (DUF1280) contains similarity to Interpro domain IPR009689 (Protein of unknown function DUF1280)
13	K03H1.8	K03H1.8	n/a	chrIII 9,945,970	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domain IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
14	fbxb-5	F45C12.14	n/a	chrII 1,721,873	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
15	K07E8.5	K07E8.5	n/a	chrII 652,962	K07E8.5 encodes a homolog of the functionally active Fmrf Receptor (FR; CG2114) of D. melanogaster; it is thus possible that K07E8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12).
16	F17H10.4	F17H10.4	n/a	chrX 13,126,169	contains similarity to Macaca fascicularis Cytochrome oxidase subunit VIII.; TR:Q8SPI5
17	F38A1.11	F38A1.11	n/a	chrIV 1,248,205	contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domain IPR006583 (CW)
18	ZK1055.4	ZK1055.4	n/a	chrV 6,586,468	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
19	sri-24	C41G6.11	n/a	chrV 15,212,913	C. elegans SRI-24 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
20	srx-67	K07C6.10	n/a	chrV 3,917,627	C. elegans SRX-67 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
21	C32B5.12	C32B5.12	n/a	chrII 952,421
22	ZK1320.9	ZK1320.9	n/a	chrII 9,685,397	contains similarity to Pfam domain PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain contains similarity to Interpro domains IPR003702 (Acetyl-CoA hydrolase/transferase), IPR001220 (Legume lectin, beta domain)
23	C54E10.2	C54E10.2	n/a	chrV 18,829,031	contains similarity to Pfam domain PF00036 EF hand contains similarity to Interpro domains IPR001125 (Recoverin), IPR011992 (EF-Hand type), IPR002048 (Calcium-binding EF-hand)
24	F35C8.8	F35C8.8	n/a	chrX 5,373,263
25	C04A11.1	C04A11.1	n/a	chrX 13,661,662	contains similarity to Sorghum bicolor Extensin precursor (Proline-rich glycoprotein).; SW:EXTN_SORBI
26	C07C7.1	C07C7.1	n/a	chrIV 9,184,575	contains similarity to Mycoplasma pulmonis Hypothetical protein MYPU_0790.; TR:Q98RD0
27	T07G12.2	T07G12.2	n/a	chrIV 10,531,796	contains similarity to Pfam domain PF00860 Permease family contains similarity to Interpro domain IPR006043 (Xanthine/uracil/vitamin C permease)
28	F59A7.8	F59A7.8	n/a	chrV 2,010,108	contains similarity to Pfam domains PF00271 (Helicase conserved C-terminal domain) , PF00176 (SNF2 family N-terminal domain) contains similarity to Interpro domains IPR000330 (SNF2-related), IPR014021 (Helicase, superfamily 1 and 2, ATP-binding), IPR014001 (DEAD-like helicase, N-terminal), IPR001650 (DNA/RNA helicase, C-terminal)
29	F28C6.9	F28C6.9	n/a	chrII 8,609,707	contains similarity to Homo sapiens Hypothetical protein KIAA0562; ENSEMBL:ENSP00000263739
30	C30F12.5	C30F12.5	n/a	chrI 6,995,898	contains similarity to Interpro domain IPR000694 (Proline-rich region)
31	C02F12.8	C02F12.8	n/a	chrX 3,691,690	contains similarity to Interpro domain IPR000694 (Proline-rich region)
32	fbxa-163	C08E3.6	n/a	chrII 1,610,019	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
33	R13D11.1	R13D11.1	n/a	chrV 818,109
34	F38E1.6	F38E1.6	n/a	chrV 8,360,585	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
35	T28F2.7	T28F2.7	n/a	chrI 3,658,340	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domains IPR003945 (NADH-plastoquinone oxidoreductase, chain 5), IPR001873 (Na+ channel, amiloride-sensitive)
36	F28G4.3	F28G4.3	n/a	chrV 16,286,908	contains similarity to Pfam domain PF07801 Protein of unknown function (DUF1647) contains similarity to Interpro domain IPR012444 (Protein of unknown function DUF1647)
37	T14C1.2	T14C1.2	n/a	chrX 14,400,452	contains similarity to Homo sapiens MHC class I molecule; ENSEMBL:ENSP00000252229
38	tag-293	C03G6.13	n/a	chrV 7,355,612	C. elegans TAG-293 protein; contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
39	T08G11.3	T08G11.3	n/a	chrI 8,923,130	contains similarity to Bos taurus Hypothetical LOC539526.; TR:Q32KR7
40	T03D8.7	T03D8.7	n/a	chrV 20,811,735	contains similarity to Homo sapiens Uncharacterized protein ENSP00000381489; ENSEMBL:ENSP00000335483
41	F15E11.4	F15E11.4	n/a	chrV 2,340,462	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
42	ttr-40	E02C12.4	n/a	chrV 9,354,969	C. elegans TTR-40 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
43	srbc-6	C36C5.3	n/a	chrV 3,170,772	C. elegans SRBC-6 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
44	F16B12.1	F16B12.1	n/a	chrX 14,087,466	contains similarity to Pfam domain PF00431 CUB domain contains similarity to Interpro domain IPR000859 (CUB)
45	D1046.5	D1046.5	n/a	chrIV 8,960,986	contains similarity to Homo sapiens Isoform 1 of Integral membrane protein GPR175; ENSEMBL:ENSP00000347748
46	col-123	W08D2.6	n/a	chrIV 9,822,477	col-123 is homologous to the human gene A TYPE IV COLLAGEN (COL6A1; OMIM:303631), which when mutated is sometimes associated with diffuse leiomyomatosis.
47	srt-34	F54E2.6	n/a	chrV 2,817,549	C. elegans SRT-34 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
48	H39E20.1	H39E20.1	n/a	chrX 1,396,448
49	K02H11.4	K02H11.4	n/a	chrV 1,529,803	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
50	F27D9.7	F27D9.7	n/a	chrX 7,667,592	contains similarity to Pfam domain PF01421 Reprolysin (M12B) family zinc metalloprotease contains similarity to Interpro domain IPR001590 (Peptidase M12B, ADAM/reprolysin)