UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	str-224	K10C9.8	0	chrV 1,057,769	C. elegans STR-224 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
2	Y48A6C.1	Y48A6C.1	n/a	chrIII 11,104,510	contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
3	C14A6.3	C14A6.3	n/a	chrV 18,147,539	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
4	T04C10.3	T04C10.3	n/a	chrX 14,813,291	contains similarity to Rattus norvegicus Myosin heavy chain, nonmuscle type A (Cellular myosin heavy chain,stype A) (Nonmuscle myosin heavy chain-A) (NMMHC-A).; SW:MYH9_RAT
5	F56A11.4	F56A11.4	n/a	chrIV 550,691	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
6	R04A9.3	R04A9.3	n/a	chrX 378,980
7	T08B6.2	T08B6.2	n/a	chrIV 4,895,590
8	str-15	T08G3.1	1e-21	chrV 16,458,013	C. elegans STR-15 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	pik-1	K09B11.1	n/a	chrIV 13,419,126	The pik-1 gene encodes a pelle/IRAK kinase homolog that may be involved in apoptosis.
10	C39B10.4	C39B10.4	n/a	chrX 10,445,432	contains similarity to Brachydanio rerio Similar to synaptonemal complex protein 1 (Fragment).; TR:Q7ZVL0
11	sra-1	AH6.4	n/a	chrII 9,520,857	sra-1 encodes a predicted seven transmembrane receptor; expressed in the male SPD and SPV neurons.
12	R03G8.1	R03G8.1	n/a	chrX 13,086,031	contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domains IPR004245 (Protein of unknown function DUF229), IPR017850 (Alkaline-phosphatase-like, core domain)
13	F35E8.2	F35E8.2	n/a	chrV 15,906,320	contains similarity to Trichomonas vaginalis G3 Viral A-type inclusion protein, putative.; TR:A2DZ81
14	F35D11.1	F35D11.1	n/a	chrII 4,627,370
15	sre-24	F37B4.9	n/a	chrV 2,885,567	C. elegans SRE-24 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domains IPR002345 (Lipocalin), IPR001046 (Natural resistance-associated macrophage protein), IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR001382 (Glycoside hydrolase, family 47)
16	K02F3.7	K02F3.7	n/a	chrIII 836,776
17	str-67	K10C9.6	0.000000000004	chrV 1,063,591	C. elegans STR-67 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
18	K09H11.4	K09H11.4	n/a	chrV 5,724,796	contains similarity to Drosophila melanogaster Flybase gene name is CG2839-PA;; FLYBASE:CG2839
19	T03E6.2	T03E6.2	0.0000008	chrV 16,582,078	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
20	srsx-32	F20A1.3	n/a	chrV 7,018,087	C. elegans SRSX-32 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
21	col-187	C30F2.1	n/a	chrX 16,073,795	C. elegans COL-187 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain) , PF01391 (Collagen triple helix repeat (20 copies)) (2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000694 (Proline-rich region), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
22	F54C1.6	F54C1.6	n/a	chrI 5,015,305	contains similarity to Interpro domain IPR001564 (Nucleoside diphosphate kinase, core)
23	Y75B8A.19	Y75B8A.19	n/a	chrIII 12,229,214	contains similarity to Lactococcus lactis Signal peptidase I (EC 3.4.21.89).; TR:Q9CDG2
24	srw-39	F19B2.3	n/a	chrV 20,166,056	C. elegans SRW-39 protein; contains similarity to Pfam domain PF06976 Protein of unknown function (DUF1300) contains similarity to Interpro domain IPR010726 (Protein of unknown function DUF1300)
25	F23D12.1	F23D12.1	n/a	chrX 14,425,936	contains similarity to Clostridium perfringens Hypothetical protein CPE1252.; TR:Q8XKZ0
26	K09F6.6	K09F6.6	n/a	chrII 2,277,012
27	C23F12.3	C23F12.3	n/a	chrX 9,393,106
28	R02E4.1	R02E4.1	n/a	chrX 4,103,960
29	K02E10.5	K02E10.5	n/a	chrX 2,477,930
30	srx-32	R13D11.9	n/a	chrV 820,140	C. elegans SRX-32 protein ;
31	fbxa-214	Y38A10A.4	n/a	chrV 6,068,922	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
32	K08B4.5	K08B4.5	n/a	chrIV 6,087,860	contains similarity to Pfam domain PF00443 Ubiquitin carboxyl-terminal hydrolase contains similarity to Interpro domains IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2), IPR011009 (Protein kinase-like), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit)
33	clec-114	C49A1.9	n/a	chrI 14,233,796	C. elegans CLEC-114 protein; contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold)
34	C13C4.6	C13C4.6	n/a	chrV 12,123,359	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
35	R12B2.6	R12B2.6	n/a	chrIII 5,834,841
36	C11G10.1	C11G10.1	n/a	chrX 15,157,907
37	C17D12.3	C17D12.3	n/a	chrI 11,618,529	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domain IPR006588 (Protein of unknown function PAW)
38	F40G12.2	F40G12.2	n/a	chrV 14,260,215	contains similarity to Interpro domain IPR003006 (Immunoglobulin/major histocompatibility complex, conserved site)
39	F28H6.7	F28H6.7	n/a	chrX 14,116,353	contains similarity to Interpro domain IPR013032 (EGF-like region, conserved site)
40	F58A6.2	F58A6.2	n/a	chrII 5,137,627
41	F59E12.8	F59E12.8	n/a	chrII 5,635,699	contains similarity to Interpro domain IPR015683 (Glutamate receptor-related)
42	srxa-16	F44G3.5	n/a	chrV 16,113,637	C. elegans SRXA-16 protein; contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR005047 (Protein of unknown function DUF286, G protein-coupled receptor-like putative Caenorhabditis species)
43	sra-23	T06G6.1	n/a	chrI 12,704,070	C. elegans SRA-23 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
44	srj-6	F31F4.8	3e-21	chrV 653,904	C. elegans SRJ-6 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
45	F47F2.2	F47F2.2	n/a	chrX 3,886,480
46	srt-3	F47D2.3	n/a	chrV 4,259,059	C. elegans SRT-3 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
47	srx-63	K07C6.6	n/a	chrV 3,932,495	C. elegans SRX-63 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
48	lgc-32	T19D7.1	n/a	chrX 674,438	C. elegans LGC-32 protein; contains similarity to Interpro domain IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
49	str-248	C55A1.3	9e-40	chrV 15,628,858	C. elegans STR-248 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
50	nhr-197	K06B4.7	n/a	chrV 15,688,881	C. elegans NHR-197 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)