UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	K09F6.5	K09F6.5	0	chrII 2,272,724	contains similarity to Interpro domain IPR000358 (Ribonucleotide reductase)
2	Y54G11A.9	Y54G11A.9	n/a	chrII 14,345,333	contains similarity to Pfam domain PF01521 Iron-sulphur cluster biosynthesis contains similarity to Interpro domains IPR016092 (HesB/YadR/YfhF), IPR000361 (HesB/YadR/YfhF-like)
3	K09F6.8	K09F6.8	n/a	chrII 2,295,399
4	srt-17	F48G7.6	n/a	chrV 624,474	C. elegans SRT-17 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
5	hil-8	T05E8.2	n/a	chrI 5,467,787	C. elegans HIL-8 protein; contains similarity to Interpro domain IPR005818 (Histone H1/H5)
6	T05E11.6	T05E11.6	n/a	chrIV 11,109,297	contains similarity to Pfam domain PF01650 Peptidase C13 family contains similarity to Interpro domain IPR001096 (Peptidase C13, legumain)
7	his-48	B0035.8	n/a	chrIV 11,324,941	his-48 encodes an H2B histone; by homology, HIS-48 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-48 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV.
8	C33A12.1	C33A12.1	n/a	chrIV 9,524,313	C33A12.1 encodes the C. elegans ortholog of the NDUFA5/B13 subunit of the mitochondrial NADH dehydrogenase (ubiquinone) complex (complex I).
9	F28C6.1	F28C6.1	n/a	chrII 8,591,963	F28C6.1 encodes an AP-2-like transcription factor that is ~60% identical to that of F28C6.2 which lies immediately adjacent to F28C6.1 on chromosome II; loss of F28C6.1 activity via large-scale RNAi experiments results in embryonic and larval lethality.
10	F36D3.1	F36D3.1	n/a	chrV 16,501,082	contains similarity to Interpro domain IPR008928 ()
11	T28F2.1	T28F2.1	n/a	chrI 3,640,560	contains similarity to Pfam domain PF01531 Glycosyl transferase family 11 contains similarity to Interpro domain IPR002516 (Glycosyl transferase, family 11)
12	C15H9.3	C15H9.3	n/a	chrX 6,116,887	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domain IPR000276 (GPCR, rhodopsin-like)
13	K07C5.2	K07C5.2	n/a	chrV 10,340,201	contains similarity to Pfam domain PF00248 Aldo/keto reductase family contains similarity to Interpro domain IPR001395 (Aldo/keto reductase)
14	F39G3.2	F39G3.2	n/a	chrV 4,739,477	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
15	T07C4.10	T07C4.10	n/a	chrIII 10,323,248	contains similarity to Interpro domains IPR002957 (Keratin, type I), IPR000533 (Tropomyosin), IPR009053 (Prefoldin)
16	C34F6.6	C34F6.6	n/a	chrX 11,207,733	contains similarity to Pisum sativum 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2-sdehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-sphosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase)s(KDOPS).; SW:KDSA_PEA
17	F26F2.5	F26F2.5	n/a	chrV 20,569,246	contains similarity to Homo sapiens zinc finger protein 318; ENSEMBL:ENSP00000302698
18	lgc-45	W10G11.16	n/a	chrII 3,566,681	C. elegans LGC-45 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
19	K08D10.5	K08D10.5	n/a	chrIV 4,168,957	contains similarity to Rhodopirellula baltica DNA-binding protein SMUBP-2.; TR:Q7UWP1
20	T20G5.10	T20G5.10	n/a	chrIII 10,211,438	contains similarity to Pfam domain PF06320 GCN5-like protein 1 (GCN5L1) contains similarity to Interpro domain IPR009395 (GCN5-like 1)
21	nhr-231	Y17D7B.1	n/a	chrV 18,792,886	C. elegans NHR-231 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
22	srh-25	C54D10.6	n/a	chrV 12,433,068	C. elegans SRH-25 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
23	gfi-3	M163.4	n/a	chrX 14,482,535	gfi-3 is also known as apc-5, encoding a distant homolog of the human anaphase promoting complex subunit APC5, but is most closely related to its C. elegans paralog Y66D12A.17; gfi-3(RNAi) animals are generally unable to progress through meiotic divisions; initially they produce reduced numbers of viable embryos mixed with inviable embryos, but then show severe germline maintenance defects and become sterile.
24	F58E1.4	F58E1.4	n/a	chrII 1,680,715	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
25	F28C6.9	F28C6.9	n/a	chrII 8,609,707	contains similarity to Homo sapiens Hypothetical protein KIAA0562; ENSEMBL:ENSP00000263739
26	K09F6.7	K09F6.7	n/a	chrII 2,291,523	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000315 (Zinc finger, B-box)
27	Y54E2A.12	Y54E2A.12	n/a	chrII 14,799,590	contains similarity to Interpro domain IPR000195 (RabGAP/TBC)
28	C17B7.5	C17B7.5	n/a	chrV 3,336,321	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domains IPR002345 (Lipocalin), IPR006588 (Protein of unknown function PAW)
29	sdz-31	T11A5.5	n/a	chrV 9,880,568	C. elegans SDZ-31 protein; contains similarity to Interpro domains IPR001376 (Gliadin, alpha/beta), IPR000896 (Hemocyanin, copper-containing)
30	sdz-1	B0303.8	n/a	chrIII 8,699,816	C. elegans SDZ-1 protein ;
31	F52C12.3	F52C12.3	n/a	chrIV 1,950,714
32	F11E6.7	F11E6.7	n/a	chrIV 17,459,510	contains similarity to Trichomonas vaginalis G3 Flocculin, putative.; TR:A2FIF9
33	F37C12.14	F37C12.14	n/a	chrIII 7,185,248
34	Y20C6A.3	Y20C6A.3	n/a	chrV 17,382,699	contains similarity to Saccharomyces cerevisiae Myo1 is a type II myosin, is localized to the actomyosin ring and is important for cytokinesis.; SGD:YHR023W
35	T01B11.1	T01B11.1	n/a	chrIV 8,448,108	contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
36	F26A1.9	F26A1.9	n/a	chrIII 4,825,812
37	Y38H6A.1	Y38H6A.1	n/a	chrV 20,322,280	contains similarity to Trypanosoma brucei brucei Histone H1.; TR:Q9N6S6
38	F31F4.17	F31F4.17	n/a	chrV 659,395
39	his-55	F54E12.1	n/a	chrIV 11,338,029	his-55 encodes an H3 histone; by homology, HIS-55 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-55 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV.
40	srw-127	C33G8.1	n/a	chrV 7,013,646	C. elegans SRW-127 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
41	T01D1.3	T01D1.3	n/a	chrII 175,055
42	T23G4.3	T23G4.3	n/a	chrIV 13,686,045	contains similarity to Homo sapiens BAG-family molecular chaperone regulator-4; ENSEMBL:ENSP00000287322
43	sup-12	T22B2.4	n/a	chrX 3,906,111	sup-12 encodes an RNA-binding protein that contains a conserved RNA recognition motif (RRM); during development, SUP-12 functions to regulate muscle-specific splicing of alternative unc-60 and egl-15 pre-mRNAs; in vitro, SUP-12 can bind unc-60 and egl-15 pre-mRNAs; a sup-12::gfp promoter fusion is expressed in body wall muscle and in the pharynx; in body wall muscle, a SUP-12::GFP localizes to nuclei in a speckled pattern.
44	M18.3	M18.3	n/a	chrIV 12,107,094	contains similarity to Pfam domain PF00733 Asparagine synthase contains similarity to Interpro domains IPR001962 (Asparagine synthase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)
45	C35A5.5	C35A5.5	n/a	chrV 10,506,811	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
46	ZK1193.3	ZK1193.3	n/a	chrX 418,922	contains similarity to Interpro domains IPR000742 (EGF-like, type 3), IPR013032 (EGF-like region, conserved site)
47	clx-1	C50F7.2	n/a	chrIV 7,735,511	clx-1 encodes a protein that contains 23 copies of a 15 amino acid repeat, possibly derived from a collagen triplet; there is no transcript evidence for this locus.
48	K05C4.3	K05C4.3	n/a	chrI 14,750,791	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
49	W03G1.3	W03G1.3	n/a	chrIV 512,107
50	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()