UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	K08D8.1	K08D8.1	1e-62	chrIV 12,893,458	contains similarity to Fusobacterium nucleatum Tryptophanase (EC 4.1.99.1).; TR:Q8RHQ6
2	Y40H7A.11	Y40H7A.11	n/a	chrIV 15,219,977	contains similarity to Interpro domain IPR006629 (LPS-induced tumor necrosis factor alpha factor)
3	F14H3.12	F14H3.12	n/a	chrV 16,074,705	contains similarity to Pfam domain PF02149 Kinase associated domain 1 contains similarity to Interpro domain IPR001772 (Kinase-associated KA1)
4	ZC196.1	ZC196.1	n/a	chrV 8,744,495
5	F52E10.4	F52E10.4	n/a	chrX 16,286,357	contains similarity to Homo sapiens Zinc finger protein 277; ENSEMBL:ENSP00000006035
6	srx-128	F55B12.7	n/a	chrV 13,838,056	C. elegans SRX-128 protein ;
7	C47D12.5	C47D12.5	n/a	chrII 11,685,843
8	dnj-4	C01G8.4	n/a	chrI 5,283,025	This gene encodes a protein containing a DnaJ ('J') domain.
9	ZK632.9	ZK632.9	n/a	chrIII 9,825,065	contains similarity to Barley yellow dwarf virus Coat protein.; SW:COAT_BYDVN
10	B0393.7	B0393.7	n/a	chrIII 4,777,124	contains similarity to Pfam domain PF00057 Low-density lipoprotein receptor domain class A contains similarity to Interpro domains IPR002172 (Low density lipoprotein-receptor, class A, cysteine-rich), IPR001881 (EGF-like calcium-binding), IPR013032 (EGF-like region, conserved site)
11	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
12	rlbp-1	T23G11.5	n/a	chrI 7,688,763	C. elegans RLBP-1 protein; contains similarity to Pfam domain PF00620 RhoGAP domain contains similarity to Interpro domains IPR008936 (Rho GTPase activation protein), IPR000198 (RhoGAP)
13	math-7	C16C4.12	n/a	chrII 1,885,961	C. elegans MATH-7 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
14	F14D2.8	F14D2.8	n/a	chrII 3,348,717	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
15	F53F10.3	F53F10.3	n/a	chrI 3,827,677	contains similarity to Pfam domain PF03650 Uncharacterised protein family (UPF0041) contains similarity to Interpro domain IPR005336 (Protein of unknown function UPF0041)
16	F56B6.6	F56B6.6	n/a	chrX 3,532,316	contains similarity to Pfam domain PF06869 Protein of unknown function (DUF1258) contains similarity to Interpro domain IPR009667 (Protein of unknown function DUF1258)
17	hlh-12	C28C12.8	n/a	chrIV 8,478,993	C. elegans HLH-12 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding), IPR002418 (Transcription regulator Myc)
18	T23F4.3	T23F4.3	n/a	chrII 1,170,980	contains similarity to Pfam domain PF01738 Dienelactone hydrolase family contains similarity to Interpro domain IPR002925 (Dienelactone hydrolase)
19	D1079.1	D1079.1	n/a	chrX 4,405,551
20	Y57G11C.18	Y57G11C.18	n/a	chrIV 14,841,760	contains similarity to Interpro domain IPR000767 (Disease resistance protein)
21	D2007.1	D2007.1	n/a	chrIII 8,155,633
22	K07A9.3	K07A9.3	n/a	chrIV 1,835,383	contains similarity to Interpro domain IPR001736 (Phospholipase D/Transphosphatidylase)
23	T24E12.5	T24E12.5	n/a	chrII 3,755,632	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
24	F07G11.2	F07G11.2	n/a	chrV 7,304,229	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
25	srh-70	T21B4.9	n/a	chrII 12,517,220	C. elegans SRH-70 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
26	F48A9.2	F48A9.2	n/a	chrI 6,593,082
27	H43I07.1	H43I07.1	n/a	chrV 4,206,564	contains similarity to Interpro domains IPR010754 (Optic atrophy 3-like), IPR005819 (Histone H5)
28	srw-137	H27D07.4	n/a	chrV 2,943,264	C. elegans SRW-137 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
29	hex-1	T14F9.3	n/a	chrX 2,225,047	hex-1 encodes a beta-N-acetylhexosaminidase that is orthologous to the human gene CERVICAL CANCER PROTO-ONCOGENE 7 (HEXB; OMIM:606873), which when mutated leads to disease.
30	K02A11.3	K02A11.3	n/a	chrI 9,746,967	contains similarity to Homo sapiens Placental protein 11 precursor; ENSEMBL:ENSP00000229003
31	C10G8.3	C10G8.3	n/a	chrV 5,313,573	contains similarity to Pfam domain PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain contains similarity to Interpro domain IPR002223 (Proteinase inhibitor I2, Kunitz metazoa)
32	T05A7.1	T05A7.1	n/a	chrII 4,678,765
33	F15D4.2	F15D4.2	n/a	chrII 13,216,307	contains similarity to Strongylocentrotus purpuratus Protein ENDO16 (Fragment).; SW:P13665
34	srh-292	Y94A7B.1	n/a	chrV 17,803,313	C. elegans SRH-292 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
35	T04A11.5	T04A11.5	n/a	chrIV 12,485,693	contains similarity to Pfam domain PF02567 Phenazine biosynthesis-like protein contains similarity to Interpro domain IPR003719 (Phenazine biosynthesis PhzC/PhzF protein)
36	ttm-2	F26G1.4	n/a	chrII 4,765,267	C. elegans TTM-2 protein; contains similarity to Pfam domain PF00339 Arrestin (or S-antigen), N-terminal domain contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011021 (Arrestin-like, N-terminal)
37	T08E11.1	T08E11.1	n/a	chrII 1,838,405	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
38	srw-19	T10H4.8	n/a	chrV 15,280,555	C. elegans SRW-19 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
39	ttr-30	T08A9.2	n/a	chrX 7,331,455	C. elegans TTR-30 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
40	W04D12.1	W04D12.1	n/a	chrIII 5,837,006
41	btb-16	F39E9.2	n/a	chrII 3,297,442	C. elegans BTB-16 protein; contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
42	T08D2.6	T08D2.6	n/a	chrX 180,977	contains similarity to Homo sapiens Protein YIPF4; ENSEMBL:ENSP00000238831
43	nhr-269	R08H2.9	n/a	chrV 15,369,318	C. elegans NHR-269 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
44	K09H9.1	K09H9.1	n/a	chrI 3,154,202	contains similarity to Pfam domain PF06542 Protein of unknown function (DUF1114) contains similarity to Interpro domain IPR009497 (Protein of unknown function DUF1114)
45	F26F2.2	F26F2.2	n/a	chrV 20,559,052	contains similarity to Saccharomyces cerevisiae Global transcription activator that acts in complex with Snf2p, Snf5p, Snf6p, and Swi3p to assist gene-specific activators; involved in the regulation of expression of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; SGD:YPL016W
46	C16A3.6	C16A3.6	n/a	chrIII 6,379,994	contains similarity to Pfam domain PF04874 Mak16 protein contains similarity to Interpro domain IPR006958 (Mak16 protein)
47	ZK1240.4	ZK1240.4	n/a	chrII 2,315,354
48	spp-11	T25D10.3	n/a	chrII 6,406,317	C. elegans SPP-11 protein; contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR011001 (Saposin-like), IPR008139 (Saposin B)
49	F36F2.2	F36F2.2	n/a	chrI 9,017,387	contains similarity to Procambarus clarkii I-connectin.; TR:Q95YM2
50	Y37A1B.8	Y37A1B.8	n/a	chrIV 14,022,381	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)