UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	scrm-8	K08D10.7	3e-171	chrIV 4,165,432	scrm-8 encodes a putative phospholipid scramblase required for normally short lifespan; SCRM-8 is homologous to human PLSCR1-5, and paralogous to other C. elegans SCRMs (e.g., SCRM-1).
2	trf-1	F45G2.6	n/a	chrIII 13,431,808	The trf-1 gene encodes a protein with a meprin-associated Traf homology (MATH) domain that may be involved in apoptosis.
3	rmd-5	T23B3.3	n/a	chrI 6,711,598	C. elegans RMD-5 protein ; contains similarity to Xenopus laevis Protein FAM82C.; SW:Q5EAU9
4	F47B3.4	F47B3.4	n/a	chrI 3,961,620	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR006077 (Vinculin/alpha-catenin), IPR003267 (Small proline-rich), IPR004296 (Protein of unknown function DUF236), IPR000694 (Proline-rich region), IPR001399 (VP6 blue-tongue virus inner capsid protein), IPR000079 (High mobility group protein HMG14 and HMG17)
5	Y48E1C.3	Y48E1C.3	n/a	chrII 13,439,410	contains similarity to Pfam domain PF00566 TBC domain contains similarity to Interpro domain IPR000195 (RabGAP/TBC)
6	C31G12.4	C31G12.4	n/a	chrV 18,177,707	contains similarity to Pfam domain PF00646 (F-box domain)
7	srv-12	T04B2.4	n/a	chrIV 10,052,440	C. elegans SRV-12 protein ;
8	Y43F8C.9	Y43F8C.9	n/a	chrV 19,646,679	contains similarity to Dictyostelium discoideum Myb-like protein.; SW:P34127
9	K02A11.2	K02A11.2	n/a	chrI 9,745,095	contains similarity to Saccharomyces cerevisiae Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis; SGD:YGR159C
10	C48E7.8	C48E7.8	n/a	chrI 6,267,364	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
11	Y51A2D.18	Y51A2D.18	n/a	chrV 18,484,174	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR001991 (Sodium:dicarboxylate symporter), IPR011701 (Major facilitator superfamily MFS-1), IPR005829 (Sugar transporter, conserved site), IPR005828 (General substrate transporter), IPR003663 (Sugar transporter), IPR016196 (MFS general substrate transporter)
12	R04B5.1	R04B5.1	n/a	chrV 10,078,069	contains similarity to Culex nigripalpus baculovirus Putative 33 kDa early protein (CUN014 similar to AcMNPV ORF92).; TR:Q99GP2
13	C15H11.1	C15H11.1	n/a	chrV 14,394,129	contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain) , PF02932 (Neurotransmitter-gated ion-channel transmembrane region) contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor, N-terminal), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region)
14	ZK353.3	ZK353.3	n/a	chrIII 8,396,275
15	T19D7.5	T19D7.5	n/a	chrX 665,501
16	str-86	F59E11.14	n/a	chrV 8,983,013	C. elegans STR-86 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
17	T27A3.5	T27A3.5	n/a	chrI 6,101,032	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
18	ttr-6	T28B4.3	n/a	chrX 6,596,773	C. elegans TTR-6 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
19	D2062.6	D2062.6	n/a	chrII 2,619,582	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
20	C42C1.3	C42C1.3	n/a	chrIV 12,269,969	contains similarity to Trypanosoma cruzi Hypothetical protein.; TR:Q4CVC5
21	F26F4.8	F26F4.8	n/a	chrIII 4,904,678	contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR007087 (Zinc finger, C2H2-type)
22	W01D2.3	W01D2.3	n/a	chrII 14,802,515	contains similarity to Haemophilus influenzae Electron transport complex protein rnfD.; SW:RNFD_HAEIN
23	lgc-30	F58H7.3	n/a	chrIV 932,249	C. elegans LGC-30 protein; contains similarity to Pfam domain PF02931 Neurotransmitter-gated ion-channel ligand binding domain contains similarity to Interpro domains IPR002394 (Nicotinic acetylcholine receptor, N-terminal), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding)
24	C29F5.5	C29F5.5	n/a	chrII 6,297,911
25	Y32B12A.4	Y32B12A.4	n/a	chrV 16,494,950	contains similarity to Pfam domain PF06678 Protein of unknown function (DUF1179) contains similarity to Interpro domain IPR009564 (Protein of unknown function DUF1179)
26	nhr-119	K12H6.1	n/a	chrII 2,799,024	C. elegans NHR-119 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
27	W06F12.3	W06F12.3	n/a	chrIII 13,735,661	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
28	F56H6.6	F56H6.6	n/a	chrI 12,295,311	contains similarity to Mus musculus N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferases(EC 2.4.1.149) (Poly-N-acetyllactosamine extension enzyme) (I-beta-s1,3-N-acetylglucosaminyltransferase) (iGnT) (UDP-GlcNAc:betaGal beta-s1,3-N-acetylglucosaminyltransferase 1).; SW:Q8BWP8
29	ZK1290.7	ZK1290.7	n/a	chrII 7,524,953	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
30	K10C9.7	K10C9.7	n/a	chrV 1,066,687
31	C17C3.11	C17C3.11	n/a	chrII 5,538,392	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
32	C10G11.10	C10G11.10	n/a	chrI 6,305,695
33	tba-6	F32H2.9	n/a	chrI 8,996,289	C. elegans TBA-6 protein; contains similarity to Pfam domains PF00091 (Tubulin/FtsZ family, GTPase domain) , PF03953 (Tubulin/FtsZ family, C-terminal domain) contains similarity to Interpro domains IPR002454 (Gamma tubulin), IPR002452 (Alpha tubulin), IPR002453 (Beta tubulin), IPR000217 (Tubulin), IPR003008 (Tubulin/FtsZ, GTPase), IPR004057 (Epsilon tubulin), IPR002967 (Delta tubulin), IPR000158 (Cell division protein FtsZ, N-terminal), IPR008280 (Tubulin/FtsZ, C-terminal)
34	C44F1.2	C44F1.2	n/a	chrIII 3,769,375	contains similarity to Pfam domains PF01342 (SAND domain) , PF02178 (AT hook motif) contains similarity to Interpro domains IPR000637 (HMG-I and HMG-Y, DNA-binding), IPR010919 (SAND-like), IPR000770 (SAND)
35	C08E8.3	C08E8.3	n/a	chrV 18,351,418	contains similarity to Clostridium perfringens Probable Ser-type protease.; TR:Q8XHC4
36	F28H1.5	F28H1.5	n/a	chrI 3,979,010
37	T21E3.2	T21E3.2	n/a	chrI 3,931,189	contains similarity to Homo sapiens 55 kDa protein; ENSEMBL:ENSP00000273725
38	grl-2	T16G1.8	n/a	chrV 12,945,836	grl-2 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain; GRL-2 is expressed in neurons, amphid socket cells, and other cells; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
39	F46B6.10	F46B6.10	n/a	chrV 9,801,717	contains similarity to Homo sapiens Hypothetical protein; TR:Q96QJ8
40	tag-344	B0511.4	n/a	chrI 10,644,917	C. elegans TAG-344 protein; contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core)
41	Y17G7B.19	Y17G7B.19	n/a	chrII 12,110,327	contains similarity to Pfam domain PF01666 (DX module)
42	Y39E4A.1	Y39E4A.1	n/a	chrIII 12,951,765	contains similarity to Mus musculus Nuclear protein ZAP3.; SW:ZAP3_MOUSE
43	F23C8.8	F23C8.8	n/a	chrI 2,431,177	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
44	F45C12.9	F45C12.9	n/a	chrII 1,709,067	contains similarity to Pfam domain PF02343 Domain of unknown function DUF130 contains similarity to Interpro domain IPR003326 (Protein of unknown function DUF130)
45	F52F10.3	F52F10.3	n/a	chrV 1,540,095	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domains IPR002656 (Acyltransferase 3), IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
46	Y41C4A.1	Y41C4A.1	n/a	chrIII 11,648,712	contains similarity to Oryza sativa Putative aspartate kinase.; TR:Q851Z6
47	C55C3.3	C55C3.3	n/a	chrIV 5,686,761	contains similarity to Trypanosoma cruzi Trans-sialidase, putative.; TR:Q4E0H9
48	F18C5.4	F18C5.4	n/a	chrII 6,564,443	contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR001478 (PDZ/DHR/GLGF)
49	abt-3	F55G11.9	n/a	chrIV 12,953,691	abt-3 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins; ABT-3 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of abt-3 activity via RNAi results in no obvious defects, the precise role of abt-3 in C. elegans development and/or behavior is not yet known.
50	rnh-1.1	ZK1290.6	n/a	chrII 7,526,915	C. elegans RNH-1.1 protein; contains similarity to Pfam domain PF00075 RNase H contains similarity to Interpro domains IPR002952 (Eggshell protein), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold), IPR002156 (Ribonuclease H)