UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	cdr-5	K01D12.14	9e-151	chrV 12,409,917	C. elegans CDR-5 protein; contains similarity to Pfam domain PF00043 Glutathione S-transferase, C-terminal domain contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR004046 (Glutathione S-transferase, C-terminal), IPR010987 (Glutathione S-transferase, C-terminal-like)
2	B0222.5	B0222.5	n/a	chrV 9,153,570	contains similarity to Pfam domains PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain) , PF00086 (Thyroglobulin type-1 repeat) contains similarity to Interpro domains IPR000716 (Thyroglobulin type-1), IPR002223 (Proteinase inhibitor I2, Kunitz metazoa)
3	smgl-1	F20G4.1	n/a	chrI 7,922,384	C. elegans SMGL-1 protein; contains similarity to Interpro domain IPR011046 (WD40 repeat-like)
4	F59D6.2	F59D6.2	n/a	chrV 3,028,937	contains similarity to Pfam domain PF00026 Eukaryotic aspartyl protease contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR001461 (Peptidase A1)
5	T22B7.7	T22B7.7	n/a	chrX 5,652,816	contains similarity to Homo sapiens CGI16-iso; ENSEMBL:ENSP00000368599
6	C26E6.1	C26E6.1	n/a	chrIII 4,957,176	contains similarity to Interpro domain IPR011009 (Protein kinase-like)
7	T10E10.4	T10E10.4	n/a	chrX 6,318,637	T10E10.4 encodes a large (966-residue) protein, predicted to be secreted, with two N-terminal chitin-binding peritrophin-A domains followed by 14 cysteine-rich domains and one C-terminal EB module; the general organization of T10E10.4 protein resembles that of K04H4.2; T10E10.4 has no obvious function in mass RNAi assays but, like CEJ-1 and CPG-2, might participate in chitin synthesis.
8	Y40H7A.9	Y40H7A.9	n/a	chrIV 15,207,561	contains similarity to Pfam domains PF01461 (7TM chemoreceptor) , PF00112 (Papain family cysteine protease) contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR013128 (Peptidase C1A, papain), IPR000668 (Peptidase C1A, papain C-terminal)
9	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
10	sptf-2	T22C8.5	n/a	chrII 8,626,542	C. elegans SPTF-2 protein; contains similarity to Pfam domain PF00096 Zinc finger, C2H2 type contains similarity to Interpro domains IPR015880 (Zinc finger, C2H2-like), IPR013087 (Zinc finger, C2H2-type/integrase, DNA-binding), IPR003656 (Zinc finger, BED-type predicted), IPR007087 (Zinc finger, C2H2-type)
11	C32B5.7	C32B5.7	n/a	chrII 962,400	contains similarity to Pfam domain PF00112 Papain family cysteine protease contains similarity to Interpro domains IPR013128 (Peptidase C1A, papain), IPR000668 (Peptidase C1A, papain C-terminal)
12	F28B1.5	F28B1.5	n/a	chrV 17,058,496
13	F35C8.1	F35C8.1	n/a	chrX 5,378,292	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
14	F16H6.5	F16H6.5	n/a	chrV 18,202,582	contains similarity to Pfam domain PF06162 Caenorhabditis elegans protein of unknown function (DUF976) contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)
15	ZC239.4	ZC239.4	n/a	chrII 3,214,931	contains similarity to Pfam domain PF02214 K+ channel tetramerisation domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR003131 (Potassium channel, voltage dependent, Kv, tetramerisation)
16	abf-4	Y38H6C.22	n/a	chrV 20,553,545	abf-4 encodes a homolog of the antibacterial factor ASABF from Ascaris suum; ABF-4 may play a role in innate immunity, though at present the only evidence for its having an antimicrobial humoral function is its sequence similarity.
17	M162.6	M162.6	n/a	chrV 19,782,521	contains similarity to Interpro domain IPR016187 (C-type lectin fold)
18	E04F6.12	E04F6.12	n/a	chrII 7,217,217
19	srbc-54	F54B8.11	n/a	chrV 15,833,053	C. elegans SRBC-54 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
20	tag-120	F40F9.2	n/a	chrV 9,708,653	tag-120 encodes a predicted transmembrane protein; as loss of tag-120 activity via RNAi does not result in any abnormalities, the precise role of TAG-120 in C. elegans development and/or behavior is not yet known; however, TAG-120 is homologous to a Drosophila NMDA receptor-associated protein and mammalian transmembrane proteins that function in Fas-mediated cell death, so TAG-120 may play a role in neuronal functions and/or apoptosis; a tag-120 reporter fusion is expressed in the nervous system, pharyngeal muscles, and to a lesser extent in the excretory system.
21	scl-20	ZK384.2	n/a	chrV 18,733,634	C. elegans SCL-20 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR002413 (Ves allergen), IPR001283 (Allergen V5/Tpx-1 related)
22	K09H11.5	K09H11.5	n/a	chrV 5,728,063
23	B0507.9	B0507.9	n/a	chrV 8,765,471
24	clec-19	F36H5.6	n/a	chrII 1,744,331	C. elegans CLEC-19 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR002345 (Lipocalin), IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
25	C18E9.10	C18E9.10	n/a	chrII 8,959,611	contains similarity to Pfam domain PF07770 SFT2-like protein contains similarity to Interpro domain IPR011691 (SFT2-like)
26	C39E6.2	C39E6.2	n/a	chrX 4,754,889
27	C17B7.12	C17B7.12	n/a	chrV 3,353,590
28	math-17	C16C4.9	n/a	chrII 1,880,205	C. elegans MATH-17 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
29	str-14	T08G3.2	n/a	chrV 16,454,252	C. elegans STR-14 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
30	C24G7.1	C24G7.1	n/a	chrI 4,110,897	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
31	H25K10.4	H25K10.4	n/a	chrIV 16,226,802	contains similarity to Pseudomonas putida Hypothetical protein.; TR:Q8VMP3
32	C41G6.12	C41G6.12	n/a	chrV 15,207,410	contains similarity to Interpro domain IPR000168 (Nematode 7TM chemoreceptor (probably olfactory))
33	clec-27	Y102A5B.1	n/a	chrV 16,855,370	C. elegans CLEC-27 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR003990 (Pancreatitis-associated protein), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
34	kin-16	M176.7	n/a	chrII 9,435,019	kin-16 encodes a novel receptor protein tyrosine kinase; like kin-15, with which it is cotranscribed, kin-16 encodes a protein that displays some unusual features, including a very small extracellular domain (50 amino acids) that lacks a cysteine-rich region typical of ligand-binding domains of known receptor tyrosine kinases, an unusual amino acid substitution in the subdomain VI motif, and a lack of typical autophosphorylation sites in the kinase insert and C-terminal domains; a kin-16 reporter is first detected in young L1 larvae in the hyp7 syncytium; later expression is detected in ventral and lateral cells that fuse with hyp7 as well as in the more anterior hyp6 syncytium late in development; this distinct expression pattern suggests that kin-16 may also play a role in development of the hypodermal syncytium and perhaps be involved in cell-cell interactions regulating postembryonic cell fusions.
35	Y47H9C.9	Y47H9C.9	n/a	chrI 11,900,113	contains similarity to Pfam domain PF06918 Protein of unknown function (DUF1280) contains similarity to Interpro domain IPR009689 (Protein of unknown function DUF1280)
36	ZC132.4	ZC132.4	n/a	chrV 4,302,829	contains similarity to Uukuniemi virus Envelope glycoprotein precursor (GP) (M polyprotein) [Contains:sGlycoprotein G1; Glycoprotein G2].; SW:P09613
37	fbxa-134	F47H4.11	n/a	chrV 17,351,442	C. elegans FBXA-134 protein; contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
38	H14A12.5	H14A12.5	n/a	chrIII 7,467,767
39	lin-31	K10G6.1	n/a	chrII 3,984,762	lin-31 encodes a winged helix (WH)-like transcription factor that is a member of the HNF3/Forkhead family of DNA-binding proteins; LIN-31 acts as a tissue-specific effector of MAP kinase-mediated signaling in the vulva; when MAP kinase is inactive, LIN-31 forms a complex with LIN-1/Ets that inhibits vulval cell fates; upon MAP kinase activation (vulval induction), LIN-31 becomes phosphorylated, dissociates from LIN-1, and goes on to promote primary and secondary vulval cell fates; LIN-31 is expressed in the vulval precursor cells.
40	M70.5	M70.5	n/a	chrIV 2,270,286	contains similarity to Pfam domain PF01436 NHL repeat contains similarity to Interpro domains IPR011042 (Six-bladed beta-propeller, TolB-like), IPR001258 (NHL repeat)
41	ZC116.1	ZC116.1	n/a	chrV 12,610,320	contains similarity to Interpro domain IPR001419 (HMW glutenin)
42	C01F1.4	C01F1.4	n/a	chrII 4,277,663	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
43	srw-86	C25F9.7	n/a	chrV 19,400,392	C. elegans SRW-86 protein ;
44	T07D3.5	T07D3.5	n/a	chrII 886,263	contains similarity to Pfam domain PF06828 Fukutin-related contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR009644 (Fukutin-related)
45	R07B1.8	R07B1.8	n/a	chrX 9,871,676
46	F41D9.1	F41D9.1	n/a	chrX 8,380,568	contains similarity to Pfam domains PF07653 (Variant SH3 domain) , PF00018 (SH3 domain) , PF00566 (TBC domain) , PF02759 (RUN domain) contains similarity to Interpro domains IPR000195 (RabGAP/TBC), IPR001452 (Src homology-3), IPR004012 (RUN), IPR013315 (Spectrin alpha chain), IPR011511 (Variant SH3)
47	B0336.12	B0336.12	n/a	chrIII 5,710,236
48	gcy-37	C54E4.3	n/a	chrIV 2,154,905	gcy-37 encodes a predicted soluble guanylyl cyclase that is expressed in four candidate sensory neurons connected to the pseudocoelom, URXL, URXR, AQR, and PQR; as loss of gcy-37 activity via RNA-mediated interference does not result in any abnormalities, the precise role of GCY-37 in C. elegans development and/or behavior is not yet known; GCY-37 expression in neurons connected to the pseudocoelom suggests, however, that GCY-37 may play a role in fluid homeostasis.
49	Y62H9A.9	Y62H9A.9	n/a	chrX 11,896,785	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8I659
50	clec-24	F49A5.4	n/a	chrV 16,863,042	C. elegans CLEC-24 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)