UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	H12D21.2	H12D21.2	2e-73	chrV 14,888,059	contains similarity to Tetrahymena thermophila Micronuclear linker histone polyprotein (MIC LH) [Contains:sMicronuclear linker histone-alpha; Micronuclear linker histone-beta;sMicronuclear linker histone-delta; Micronuclear linker histone-gamma].; SW:P40631
2	Y54E2A.9	Y54E2A.9	n/a	chrII 14,785,517	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
3	F40F12.3	F40F12.3	n/a	chrIII 9,919,252
4	ZC412.9	ZC412.9	2e-73	chrV 14,881,691	contains similarity to Tetrahymena thermophila Micronuclear linker histone polyprotein (MIC LH) [Contains:sMicronuclear linker histone-alpha; Micronuclear linker histone-beta;sMicronuclear linker histone-delta; Micronuclear linker histone-gamma].; SW:P40631
5	Y41C4A.7	Y41C4A.7	n/a	chrIII 11,699,359	contains similarity to Interpro domain IPR008962 (PapD-like)
6	F57B9.8	F57B9.8	n/a	chrIII 6,934,439	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
7	dct-9	W03F11.3	n/a	chrI 2,234,343	C. elegans DCT-9 protein; contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
8	F46F5.9	F46F5.9	n/a	chrII 822,679	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
9	Y57G11C.6	Y57G11C.6	n/a	chrIV 14,759,618	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
10	C33F10.12	C33F10.12	n/a	chrII 4,837,006	contains similarity to Pfam domain PF00153 Mitochondrial carrier protein contains similarity to Interpro domains IPR002067 (Mitochondrial carrier protein), IPR001993 (Mitochondrial substrate carrier), IPR000802 (Arsenical pump membrane protein), IPR002113 (Adenine nucleotide translocator 1)
11	M7.7	M7.7	n/a	chrIV 11,090,870	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
12	kin-5	T13H10.1	n/a	chrIV 9,968,114	kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis); as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known.
13	F42G4.2	F42G4.2	n/a	chrII 13,049,257	contains similarity to Homo sapiens Transcription initiation factor TFIID subunit 3; ENSEMBL:ENSP00000340271
14	Y18D10A.21	Y18D10A.21	n/a	chrI 12,930,221	contains similarity to Watermelon silver mottle virus L protein.; TR:Q9DSQ1
15	Y45F10B.8	Y45F10B.8	n/a	chrIV 13,577,771	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000533 (Tropomyosin)
16	F47D12.7	F47D12.7	n/a	chrIII 6,294,525	contains similarity to Pfam domains PF01344 (Kelch motif) (5), PF00651 (BTB/POZ domain) , PF07646 (Kelch motif) contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000210 (BTB/POZ-like), IPR006652 (Kelch repeat type 1), IPR011333 (BTB/POZ fold), IPR011498 (Kelch repeat type 2), IPR015916 (Galactose oxidase, beta-propeller), IPR013069 (BTB/POZ), IPR013089 (Kelch related), IPR006651 (Kelch), IPR015915 (Kelch-type beta propeller)
17	F13E9.5	F13E9.5	n/a	chrIV 10,883,638	contains similarity to Helicobacter pylori;Helicobacter pylori J99 Hypothetical protein HP0031/JHP0027.; SW:Y031_HELPY
18	C08F8.6	C08F8.6	n/a	chrIV 11,163,509	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
19	K09C6.2	K09C6.2	n/a	chrV 857,653	contains similarity to Yarrowia lipolytica Similar to sp\|P32583 Saccharomyces cerevisiae YKR092c SRP40 Suppressorsprotein.; TR:Q6CEY9
20	grl-9	ZC487.4	n/a	chrV 6,730,970	grl-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
21	ZK809.1	ZK809.1	n/a	chrIV 11,642,874	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
22	ZK1248.5	ZK1248.5	n/a	chrII 5,811,119	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR001940 (Peptidase S1C, HrtA/DegP2/Q/S), IPR009658 (Protein of unknown function DUF1248)
23	C34F11.5	C34F11.5	n/a	chrII 5,197,549	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
24	F59A6.2	F59A6.2	n/a	chrII 5,015,006	contains similarity to Homo sapiens High mobility group protein 1-like 10; ENSEMBL:ENSP00000215935
25	T21E12.5	T21E12.5	n/a	chrI 4,412,759
26	T28D9.9	T28D9.9	n/a	chrII 6,484,502
27	Y51A2B.6	Y51A2B.6	n/a	chrV 18,393,120	contains similarity to Interpro domain IPR003125 (Protein of unknown function WSN)
28	K06H7.8	K06H7.8	n/a	chrIII 8,097,370	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
29	clec-134	W10G11.11	n/a	chrII 3,580,752	C. elegans CLEC-134 protein; contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
30	ttr-9	C33A12.15	n/a	chrIV 9,505,947	C. elegans TTR-9 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
31	K05F1.8	K05F1.8	n/a	chrII 5,799,460
32	T08H10.4	T08H10.4	n/a	chrV 4,480,975	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
33	F59C6.2	F59C6.2	n/a	chrI 10,523,017	contains similarity to Pfam domain PF01529 DHHC zinc finger domain contains similarity to Interpro domain IPR001594 (Zinc finger, DHHC-type)
34	C08F8.4	C08F8.4	n/a	chrIV 11,158,277	contains similarity to Pfam domain PF03062 MBOAT family contains similarity to Interpro domain IPR004299 (Membrane bound O-acyl transferase, MBOAT)
35	T02E1.7	T02E1.7	n/a	chrI 8,209,741	contains similarity to Pfam domain PF02077 SURF4 family contains similarity to Interpro domains IPR002995 (Surfeit locus 4), IPR011592 (Surfeit locus 4-related)
36	cdc-25.4	R05H5.2	n/a	chrII 10,189,551	a homolog of dual specificity phosphatase Cdc25.
37	ZK354.3	ZK354.3	n/a	chrIV 5,310,807	contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR005448 (Voltage-dependent calcium channel, P/Q-type, alpha-1 subunit), IPR005398 (Tubby, N-terminal)
38	W02A2.8	W02A2.8	n/a	chrIV 13,356,775
39	C34D4.2	C34D4.2	n/a	chrIV 7,155,353	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
40	mab-9	T27A1.6	n/a	chrII 518,813	mab-9 encodes a member of the T-box family of transcriptional regulators containing a 200-amino acid T-box DNA-binding domain most similar to mouse Brachyury; mab-9 is involved in hindgut and male tail development, specifically affecting the fate of two posterior blast cells in the hindgut, B and F; in the male this results in a grossly abnormal tail lacking spicules, and renders them incapable of mating; in the hermaphrodite this results in hindgut defects; mab-9 may also be part of a network of T-box genes that includes tbx-8, tbx-9 and vab-7 and is important for the correct patterning of posterior cells in the developing embryo; mab-9 affects movement to some extent though the basis for this defect is unknown; MAB-9 localizes to the nucleus of B and F and their descendents during development.
41	C34F11.2	C34F11.2	n/a	chrII 5,212,509
42	F56F4.3	F56F4.3	n/a	chrI 6,142,912	contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domains IPR000175 (Sodium:neurotransmitter symporter), IPR001411 (Tetracycline resistance protein, TetB), IPR002208 (SecY protein), IPR002229 (Blood group Rhesus C/E and D polypeptide)
43	B0207.9	B0207.9	n/a	chrI 5,957,923
44	ZK673.6	ZK673.6	n/a	chrII 10,463,519	contains similarity to Hydra attenuata Myosin heavy chain, clone 203 (Fragment).; SW:MYS3_HYDAT
45	T20F5.5	T20F5.5	n/a	chrI 3,918,806	contains similarity to Homo sapiens Isoform E of Proteoglycan-4 precursor; ENSEMBL:ENSP00000356454
46	R08C7.8	R08C7.8	n/a	chrIV 4,433,806	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
47	clec-129	W10G11.15	n/a	chrII 3,572,181	C. elegans CLEC-129 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
48	T27E4.6	T27E4.6	n/a	chrV 9,071,672	contains similarity to Interpro domain IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
49	R155.2	R155.2	n/a	chrIII 1,967,000	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR013992 (Adenylate cyclase-associated CAP, N-terminal), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
50	tag-212	T14D7.3	n/a	chrII 8,859,305	C. elegans TAG-212 protein; contains similarity to Pfam domain PF00957 Synaptobrevin contains similarity to Interpro domain IPR001388 (Synaptobrevin)