UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	str-9	F57A10.1	0	chrV 15,759,569	C. elegans STR-9 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
2	C49F8.1	C49F8.1	n/a	chrX 13,363,169	contains similarity to Saccharomyces cerevisiae Actin-binding protein of the cortical actin cytoskeleton, important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization; SGD:YCR088W
3	T13F3.4	T13F3.4	n/a	chrV 16,265,325	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domain IPR002542 (Protein of unknown function DUF19)
4	Y9C2UA.2	Y9C2UA.2	n/a	chrII 9,146,370	contains similarity to Arabidopsis thaliana At2g44720/F16B22.21.; TR:Q8RWQ1
5	ZK643.6	ZK643.6	n/a	chrIII 8,958,109	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
6	C48C5.1	C48C5.1	n/a	chrX 8,982,602	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002286 (P2 purinoceptor), IPR005390 (Neuromedin U receptor), IPR000276 (GPCR, rhodopsin-like)
7	R03H10.2	R03H10.2	n/a	chrII 4,161,532
8	T28A11.17	T28A11.17	n/a	chrV 3,264,867	T28A11.17 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; T28A11.17 has no clear orthologs in other organisms.
9	C16D6.3	C16D6.3	n/a	chrX 12,526,895	contains similarity to Prochlorococcus marinus Predicted protein.; TR:Q7VCK1
10	F58E2.3	F58E2.3	n/a	chrIV 3,468,626	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
11	gur-5	ZK622.2	n/a	chrII 5,287,091	C. elegans GUR-5 protein ;
12	C47A10.5	C47A10.5	n/a	chrV 17,775,721	C47A10.5 encodes a D-aspartate oxidase (DASPO), paralogous to F18E3.7 and F20H11.5; recombinant C47A10.5 protein has DASPO acvitity on acidic D-amino acid substrates (e.g., D-aspartate, D-glutamate, or N-methyl-D-aspartate/NMDA), with highest catalytic efficiency on D-glutamate; since the C-terminal residues of C47A10.5 match the PTS1 consensus sequence, C47A10.5 is predicted to be peroxisomal.
13	T08E11.1	T08E11.1	n/a	chrII 1,838,405	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
14	B0496.5	B0496.5	n/a	chrIV 7,421,847	contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
15	B0284.4	B0284.4	n/a	chrIII 4,386,243	contains similarity to Homo sapiens similar to forkhead-associated (FHA) phosphopeptide binding domain 1; ENSEMBL:ENSP00000318812
16	srbc-30	C02A12.3	n/a	chrV 3,479,236	C. elegans SRBC-30 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
17	clec-31	F49A5.2	n/a	chrV 16,857,086	C. elegans CLEC-31 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR003990 (Pancreatitis-associated protein), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
18	srz-31	H12I19.2	n/a	chrIV 14,138,796	C. elegans SRZ-31 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
19	fbxb-6	F07E5.1	n/a	chrII 2,066,717	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
20	ilys-1	C45G7.1	n/a	chrIV 2,470,894	C. elegans ILYS-1 protein; contains similarity to Pfam domain PF05497 Destabilase contains similarity to Interpro domain IPR008597 (Destabilase)
21	C04A11.1	C04A11.1	n/a	chrX 13,661,662	contains similarity to Sorghum bicolor Extensin precursor (Proline-rich glycoprotein).; SW:EXTN_SORBI
22	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
23	C50A2.3	C50A2.3	n/a	chrIV 1,148,209
24	C18A11.2	C18A11.2	n/a	chrX 8,067,797
25	ZK822.2	ZK822.2	n/a	chrIV 11,922,736	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
26	srj-16	T06A1.2	0.000000000000006	chrV 1,955,236	C. elegans SRJ-16 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
27	B0507.6	B0507.6	n/a	chrV 8,749,589	contains similarity to Pfam domain PF05218 Protein of unknown function (DUF713) contains similarity to Interpro domain IPR007883 (Protein of unknown function DUF713)
28	F07G11.4	F07G11.4	n/a	chrV 7,293,758	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
29	W04G5.4	W04G5.4	n/a	chrI 11,631,445	contains similarity to Pfam domain PF04721 Domain of unknown function (DUF750) contains similarity to Interpro domains IPR008996 (Cytokine, IL-1-like), IPR006588 (Protein of unknown function PAW)
30	Y37H2B.1	Y37H2B.1	n/a	chrV 18,227,570	contains similarity to Xylella fastidiosa Beta-hexosaminidase precursor.; TR:Q9PF31
31	srg-34	Y51A2D.12	n/a	chrV 18,563,515	C. elegans SRG-34 protein; contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
32	F15E6.9	F15E6.9	n/a	chrIV 4,296,304
33	daf-11	B0240.3	n/a	chrV 11,721,848	The daf-11 gene encodes a guanylate cyclase that affects dauer formation, chemotaxis, and axon formation; it is genetically upstream of daf-12 with respect to dauer larvae formation and is expressed in a subset of amphid neurons.
34	glb-17	F49E2.4	n/a	chrX 9,574,890	glb-17 encodes a globin with no obvious function in mass RNAi assays.
35	spp-11	T25D10.3	n/a	chrII 6,406,317	C. elegans SPP-11 protein; contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR011001 (Saposin-like), IPR008139 (Saposin B)
36	T04C9.2	T04C9.2	n/a	chrIII 5,992,002
37	C10E2.2	C10E2.2	n/a	chrX 16,746,897	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
38	clec-2	B0454.7	n/a	chrII 3,021,991	C. elegans CLEC-2 protein; contains similarity to Pfam domains PF00431 (CUB domain) , PF00059 (Lectin C-type domain) (2)contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
39	fbxa-88	F10A3.2	n/a	chrV 16,142,535	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
40	sri-2	F36G9.9	n/a	chrV 15,964,503	C. elegans SRI-2 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR002208 (SecY protein)
41	nas-10	K09C8.3	n/a	chrX 10,962,779	nas-10 encodes an astacin-like metalloprotease.
42	ZC13.2	ZC13.2	n/a	chrX 881,854
43	clec-140	T05A7.2	n/a	chrII 4,675,089	C. elegans CLEC-140 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
44	T27F6.8	T27F6.8	n/a	chrI 12,498,624	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
45	F41E7.1	F41E7.1	n/a	chrX 10,281,146	contains similarity to Pfam domain PF00999 Sodium/hydrogen exchanger family contains similarity to Interpro domains IPR006153 (Sodium/hydrogen exchanger), IPR001680 (WD40 repeat)
46	srsx-2	F20E11.2	n/a	chrV 17,437,669	C. elegans SRSX-2 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
47	srab-11	C36C5.8	n/a	chrV 3,146,053	C. elegans SRAB-11 protein; contains similarity to Pfam domain PF02175 C.elegans integral membrane protein Srb contains similarity to Interpro domain IPR002184 (Serpentine beta receptor)
48	srab-16	R13D11.6	n/a	chrV 783,761	C. elegans SRAB-16 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
49	str-199	Y68A4A.3	0.000001	chrV 17,189,811	C. elegans STR-199 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
50	nhr-186	F47C10.3	n/a	chrV 3,853,607	C. elegans NHR-186 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)