UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F54H5.2	F54H5.2	0	chrII 6,628,318	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
2	gska-3	C36B1.10	n/a	chrI 8,750,510	C. elegans GSKA-3 protein; contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
3	C04G2.10	C04G2.10	n/a	chrIV 10,116,708	contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)
4	C50E10.1	C50E10.1	n/a	chrII 12,301,690	contains similarity to Gibberella zeae Hypothetical protein.; TR:Q4IR83
5	C09B9.2	C09B9.2	n/a	chrIV 5,030,143
6	R08C7.8	R08C7.8	n/a	chrIV 4,433,806	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
7	T05C12.1	T05C12.1	1e-37	chrII 8,174,196	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
8	H06H21.9	H06H21.9	n/a	chrIV 4,826,390	H06H21.9 encodes a Caenorhabditis-specific protein with two PDZ domains that inhibits CEP-1- and HUS-1-dependent germline apoptosis, as do BMK-1, RAD-50, and RAD-51.
9	kin-5	T13H10.1	n/a	chrIV 9,968,114	kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis); as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known.
10	K09C6.2	K09C6.2	n/a	chrV 857,653	contains similarity to Yarrowia lipolytica Similar to sp\|P32583 Saccharomyces cerevisiae YKR092c SRP40 Suppressorsprotein.; TR:Q6CEY9
11	M7.7	M7.7	2e-18	chrIV 11,090,870	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
12	H12D21.2	H12D21.2	n/a	chrV 14,888,059	contains similarity to Tetrahymena thermophila Micronuclear linker histone polyprotein (MIC LH) [Contains:sMicronuclear linker histone-alpha; Micronuclear linker histone-beta;sMicronuclear linker histone-delta; Micronuclear linker histone-gamma].; SW:P40631
13	F57A8.6	F57A8.6	n/a	chrV 10,072,890	contains similarity to Pfam domain PF01666 DX module contains similarity to Interpro domain IPR002593 (Protein of unknown function DX)
14	T27E4.6	T27E4.6	n/a	chrV 9,071,672	contains similarity to Interpro domain IPR006621 (Nose resistant to fluoxetine-4, N-terminal)
15	clec-155	T04A8.3	n/a	chrIII 4,684,119	C. elegans CLEC-155 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
16	ZC477.2	ZC477.2	n/a	chrIV 7,109,050	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
17	ZK1128.3	ZK1128.3	n/a	chrIII 10,117,815	contains similarity to Mus musculus 2410017P07Rik protein.; TR:Q9CZE0
18	ZK354.3	ZK354.3	n/a	chrIV 5,310,807	contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR005448 (Voltage-dependent calcium channel, P/Q-type, alpha-1 subunit), IPR005398 (Tubby, N-terminal)
19	C17H12.12	C17H12.12	n/a	chrIV 6,796,979	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
20	M88.3	M88.3	n/a	chrIII 4,544,265	contains similarity to Interpro domain IPR001841 (Zinc finger, RING-type)
21	F56F4.3	F56F4.3	n/a	chrI 6,142,912	contains similarity to Pfam domain PF00209 Sodium:neurotransmitter symporter family contains similarity to Interpro domains IPR000175 (Sodium:neurotransmitter symporter), IPR001411 (Tetracycline resistance protein, TetB), IPR002208 (SecY protein), IPR002229 (Blood group Rhesus C/E and D polypeptide)
22	F14H3.2	F14H3.2	n/a	chrV 16,050,616	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
23	F57B9.8	F57B9.8	n/a	chrIII 6,934,439	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
24	C34F11.5	C34F11.5	n/a	chrII 5,197,549	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
25	ZC412.9	ZC412.9	n/a	chrV 14,881,691	contains similarity to Tetrahymena thermophila Micronuclear linker histone polyprotein (MIC LH) [Contains:sMicronuclear linker histone-alpha; Micronuclear linker histone-beta;sMicronuclear linker histone-delta; Micronuclear linker histone-gamma].; SW:P40631
26	ZK593.9	ZK593.9	0.009	chrIV 10,941,883	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
27	clp-2	T04A8.16	n/a	chrIII 4,702,158	clp-2 encodes a large calpain subunit that contains two predicted MIT (microtubule interacting and trafficking) domains and is homologous to the mammalian Calpain 7 proteins and the atypical, nuclear-localized Aspergillus calpain, PalB; by homology, CLP-2 is predicted to function as a calcium-dependent, cysteine protease that is involved in intracellular proteolysis and peptidolysis; however, as loss of clp-2 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of CLP-2 in C. elegans development and/or behavior is not yet known.
28	C18H2.3	C18H2.3	n/a	chrIII 7,685,691	contains similarity to Pfam domains PF00023 (Ankyrin repeat) (2), PF00533 (BRCA1 C Terminus (BRCT) domain) (2)contains similarity to Interpro domains IPR002110 (Ankyrin), IPR001357 (BRCT)
29	srr-3	F36D3.3	n/a	chrV 16,507,773	C. elegans SRR-3 protein; contains similarity to Pfam domain PF03268 Caenorhabditis protein of unknown function, DUF267 contains similarity to Interpro domain IPR004950 (Protein of unknown function DUF267, Caenorhabditis species)
30	C28D4.5	C28D4.5	n/a	chrIV 9,746,156	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR016181 (Acyl-CoA N-acyltransferase), IPR009658 (Protein of unknown function DUF1248)
31	grl-9	ZC487.4	n/a	chrV 6,730,970	grl-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a central proline-rich low-complexity region, and a C-terminal Ground-like (Grl) domain; the Grl domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins.
32	C13A2.1	C13A2.1	n/a	chrV 7,290,625	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
33	F26B1.1	F26B1.1	n/a	chrI 6,328,529	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000352916
34	Y41C4A.7	Y41C4A.7	n/a	chrIII 11,699,359	contains similarity to Interpro domain IPR008962 (PapD-like)
35	C14C11.1	C14C11.1	n/a	chrV 5,664,396
36	W05B10.3	W05B10.3	n/a	chrV 12,661,622	contains similarity to Melanoplus sanguinipes entomopoxvirus ORF MSV209 putative vaccinia A21L homolog, similar to SW:P20996.; TR:Q9YVN3
37	C28D4.4	C28D4.4	n/a	chrIV 9,744,359	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR016181 (Acyl-CoA N-acyltransferase), IPR009658 (Protein of unknown function DUF1248)
38	Y54E2A.9	Y54E2A.9	n/a	chrII 14,785,517	contains similarity to Pfam domain PF03762 Vitelline membrane outer layer protein I (VOMI) contains similarity to Interpro domain IPR005515 (Vitelline membrane outer layer protein I (VOMI))
39	C17C3.5	C17C3.5	n/a	chrII 5,552,099	contains similarity to Pfam domain PF01827 FTH domain contains similarity to Interpro domain IPR002900 (Protein of unknown function DUF38, Caenorhabditis species)
40	Y57G7A.5	Y57G7A.5	n/a	chrII 1,274,377
41	F29B9.8	F29B9.8	n/a	chrIV 4,648,582
42	F56B3.6	F56B3.6	n/a	chrIV 789,430	contains similarity to Pfam domain PF03134 TB2/DP1, HVA22 family contains similarity to Interpro domain IPR004345 (TB2/DP1 and HVA22 related protein)
43	C18A3.7	C18A3.7	n/a	chrII 5,730,004	contains similarity to Homo sapiens Isoform 1 of Arginine/serine-rich coiled-coil protein 1; ENSEMBL:ENSP00000295930
44	C49C8.1	C49C8.1	2e-20	chrIV 8,655,687	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
45	Y37A1A.2	Y37A1A.2	n/a	chrIV 13,909,126	contains similarity to Pfam domain PF05978 Eukaryotic protein of unknown function (DUF895) contains similarity to Interpro domains IPR010291 (Protein of unknown function DUF895, eukaryotic), IPR016196 (MFS general substrate transporter)
46	K01H12.4	K01H12.4	n/a	chrIV 9,714,029	contains similarity to Simian T-lymphotropic virus 1 Rex p27 protein (Fragment).; TR:O12387
47	Y57G11C.6	Y57G11C.6	n/a	chrIV 14,759,618	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
48	F36D3.5	F36D3.5	n/a	chrV 16,512,428	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00023 (Ankyrin repeat) , PF00533 (BRCA1 C Terminus (BRCT) domain) contains similarity to Interpro domains IPR002110 (Ankyrin), IPR003125 (Protein of unknown function WSN), IPR001357 (BRCT)
49	F45E4.6	F45E4.6	n/a	chrIV 7,631,176	contains similarity to Interpro domain IPR013032 (EGF-like region, conserved site)
50	elo-7	F56H11.3	n/a	chrIV 9,530,584	The elo-7 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase; ELO-7 has no known function in vivo.