UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F54D5.14	F54D5.14	0	chrII 11,580,652	contains similarity to Pfam domain PF02463 RecF/RecN/SMC N terminal domain contains similarity to Interpro domain IPR003395 (RecF/RecN/SMC protein, N-terminal)
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	W04E12.7	W04E12.7	n/a	chrV 19,731,742	contains similarity to Pfam domain PF06162 Caenorhabditis elegans protein of unknown function (DUF976) contains similarity to Interpro domains IPR010381 (Protein of unknown function DUF976, Caenorhabditis species), IPR016125 (Peptidase C15, pyroglutamyl peptidase I-like)
4	F08F8.2	F08F8.2	n/a	chrIII 7,360,724	contains similarity to Pfam domain PF00368 Hydroxymethylglutaryl-coenzyme A reductase contains similarity to Interpro domains IPR004554 (Hydroxymethylglutaryl-CoA reductase, class I, catalytic), IPR009029 (Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding), IPR002202 (Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic)
5	T08B2.11	T08B2.11	n/a	chrI 6,222,182	contains similarity to Homo sapiens Transcription initiation factor TFIID subunit 3; ENSEMBL:ENSP00000340271
6	prg-1	D2030.6	n/a	chrI 7,586,932	C. elegans PRG-1 protein; contains similarity to Pfam domains PF02170 (PAZ domain) , PF02171 (Piwi domain) contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR003100 (Argonaute and Dicer protein, PAZ), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
7	C34H4.2	C34H4.2	n/a	chrIV 1,554,675	contains similarity to Pfam domain PF03409 Protein of unknown function (DUF274) contains similarity to Interpro domain IPR005071 (Protein of unknown function DUF274)
8	F30A10.10	F30A10.10	n/a	chrI 9,508,859	contains similarity to Pfam domains PF00443 (Ubiquitin carboxyl-terminal hydrolase) , PF02809 (Ubiquitin interaction motif) contains similarity to Interpro domain IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
9	lbp-8	T22G5.6	n/a	chrV 13,891,011	lpb-8 belongs to a family of small intracellular fatty acid binding proteins (FABPs) that includes As-p18, found in the parasitic nematode Ascaris suum; lpb-8 shares 55% identity with bovine heart FABP but only 25% identity with As-p18 and lacks a secretory signal
10	F49F1.8	F49F1.8	n/a	chrIV 4,132,560	contains similarity to Pfam domain PF00098 Zinc knuckle contains similarity to Interpro domains IPR013084 (Zinc finger, CCHC retroviral-type), IPR001878 (Zinc finger, CCHC-type)
11	K01G5.3	K01G5.3	n/a	chrIII 10,751,062	contains similarity to Mus musculus Ladinin 1 (Lad-1) (Linear IgA disease autoantigen).; SW:LAD1_MOUSE
12	spd-5	F56A3.4	n/a	chrI 5,173,414	C. elegans SPD-5 protein; contains similarity to Interpro domains IPR002017 (Spectrin repeat), IPR000533 (Tropomyosin), IPR009053 (Prefoldin)
13	T22B2.6	T22B2.6	n/a	chrX 3,915,288
14	Y32B12B.4	Y32B12B.4	n/a	chrV 16,558,385	Y32B12B.4 encodes a protein with a THAP or THAP-like domain; other proteins with such domains include LIN-15A, LIN-15B, LIN-36, and HIM-17 (which all interact with LIN-35/Rb), as well as CDC-14B, CTB-1, GON-14, and ~100 other proteins such as Drosophila P element transposase and human nuclear proapoptotic factor THAP1.
15	D2096.11	D2096.11	n/a	chrIV 8,390,987	contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain) (2), PF02187 (Growth-Arrest-Specific Protein 2 Domain) contains similarity to Interpro domains IPR003108 (Growth-arrest-specific protein 2), IPR002017 (Spectrin repeat), IPR016146 (Calponin-homology), IPR001715 (Calponin-like actin-binding)
16	fzo-1	ZK1248.14	n/a	chrII 5,834,733	C. elegans FZO-1 protein; contains similarity to Pfam domain PF04799 fzo-like conserved region contains similarity to Interpro domains IPR006884 (Fzo-like conserved region), IPR001019 (Guanine nucleotide binding protein (G-protein), alpha subunit)
17	F02C12.1	F02C12.1	n/a	chrX 13,404,175	contains similarity to Interpro domain IPR000433 (Zinc finger, ZZ-type)
18	hcp-1	ZK1055.1	0.0000005	chrV 6,596,666	hcp-1 encodes a homolog of the mammalian centromere protein-F (CENP-F) and is involved in mitotic chromosome segregation; hcp-1 functions in an ordered pathway consisting of two other CENP proteins encoded by hcp-3 and hcp-4 to control assembly of the kinetochore; hcp-1 localization to the kinetochore is dependent on hcp-3 and hcp-4.
19	B0273.3	B0273.3	n/a	chrIV 5,485,115	contains similarity to Tetraodon nigroviridis Chromosome 18 SCAF15038, whole genome shotgun sequence. (Fragment).; TR:Q4RJG8
20	K06A1.3	K06A1.3	n/a	chrII 6,442,625	contains similarity to Pfam domain PF00100 Zona pellucida-like domain contains similarity to Interpro domain IPR001507 (Endoglin/CD105 antigen)
21	ZK1037.6	ZK1037.6	n/a	chrV 15,326,789	contains similarity to Pfam domain PF02408 CUB-like domain contains similarity to Interpro domains IPR000859 (CUB), IPR003366 (CUB-like region)
22	F44E7.3	F44E7.3	n/a	chrV 5,772,314
23	tag-353	F25D7.2	n/a	chrI 10,401,993	C. elegans TAG-353 protein; contains similarity to Interpro domain IPR000626 (Ubiquitin)
24	F43G6.4	F43G6.4	n/a	chrII 11,793,919	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
25	F49H6.3	F49H6.3	n/a	chrV 17,015,023	contains similarity to Pfam domain PF06653 Protein of unknown function (DUF1164) contains similarity to Interpro domain IPR009545 (Protein of unknown function DUF1164)
26	hcp-4	T03F1.9	n/a	chrI 3,864,358	The hcp-4 gene encodes a centromere protein (CENP)-C homolog, holocentric protein (HCP)-4.
27	T05C12.4	T05C12.4	n/a	chrII 8,178,909	contains similarity to Interpro domain IPR003566 (T-cell surface glycoprotein CD5)
28	E01G4.6	E01G4.6	n/a	chrII 13,483,996	contains similarity to Caenorhabditis remanei P17 (Fragment).; TR:A0MIX2
29	ech-1	C29F3.1	n/a	chrV 15,359,193	ech-1 encodes an enoyl-CoA hydratase; loss of ech-1 activity via RNAi results in reduced body fat, consistent with ECH-1's predicted role in fatty acid metabolism; expression of ech-1 mRNA is positively regulated by the NHR-49 nuclear receptor.
30	F25H5.7	F25H5.7	n/a	chrI 9,156,467	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
31	mlh-1	T28A8.7	n/a	chrIII 13,511,833	The mlh-1 gene encodes a DNA mismatch repair protein homolog that is orthologous to human MLH1.
32	C02C2.4	C02C2.4	n/a	chrIII 7,863,860	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
33	K07F5.7	K07F5.7	n/a	chrIV 9,847,922	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
34	F49F1.1	F49F1.1	n/a	chrIV 4,118,476	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
35	C03B1.5	C03B1.5	n/a	chrX 6,356,595	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR008266 (Tyrosine protein kinase, active site)
36	H34I24.2	H34I24.2	n/a	chrIII 2,843,610	contains similarity to Homo sapiens Mucin-7 precursor; ENSEMBL:ENSP00000302021
37	C43E11.5	C43E11.5	n/a	chrI 4,237,822	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
38	clec-185	C25G4.1	n/a	chrIV 12,440,827	C. elegans CLEC-185 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
39	grd-14	T01B10.2	n/a	chrX 8,500,290	grd-14 encodes a hedgehog-like protein, with an N-terminal signal sequence and a C-terminal Ground domain; the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins; GRD-14 is required for normal growth to full size, locomotion, and vulval morphogenesis; all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking.
40	T19B10.8	T19B10.8	n/a	chrV 11,243,290	contains similarity to Pfam domain PF07819 PGAP1-like protein contains similarity to Interpro domain IPR012908 (PGAP1-like)
41	F13D12.5	F13D12.5	n/a	chrII 11,727,540	contains similarity to Interpro domain IPR001814 (Filamentous bacteriophage Vg4 protein)
42	C02G6.1	C02G6.1	n/a	chrV 5,878,092	contains similarity to Pfam domains PF00675 (Insulinase (Peptidase family M16)) , PF05193 (Peptidase M16 inactive domain) (2)contains similarity to Interpro domains IPR001431 (Peptidase M16, zinc-binding site), IPR011765 (Peptidase M16, N-terminal), IPR011237 (Peptidase M16, core), IPR007863 (Peptidase M16, C-terminal), IPR011249 (Metalloenzyme, LuxS/M16 peptidase-like, metal-binding)
43	ubxn-1	F23C8.4	n/a	chrI 2,434,821	C. elegans UBXN-1 protein; contains similarity to Pfam domains PF00789 (UBX domain) , PF00627 (UBA/TS-N domain) contains similarity to Interpro domains IPR001969 (Peptidase aspartic, active site), IPR000449 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal), IPR015940 (Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote), IPR001012 (UBX), IPR007087 (Zinc finger, C2H2-type)
44	F57B10.1	F57B10.1	n/a	chrI 6,582,350	contains similarity to Pfam domains PF07716 (Basic region leucine zipper) , PF00170 (bZIP transcription factor) contains similarity to Interpro domains IPR002112 (Transcription factor Jun), IPR011700 (Basic leucine zipper), IPR004827 (Basic-leucine zipper (bZIP) transcription factor), IPR002227 (Tyrosinase), IPR008917 (Eukaryotic transcription factor, Skn-1-like, DNA-binding), IPR011616 (bZIP transcription factor, bZIP-1)
45	nduf-2.2	T26A5.3	n/a	chrIII 6,466,129	T26A5.3 encodes a predicted mitochondrial protein whose mature sequence has near-identity (95%) to GAS-1; T26A5.3 transcription is detectable by RT-PCR, but not visible by promoter-GFP fusion; however, a transgene containing a fusion of the gas-1 promoter to the T26A5.3 protein-coding sequence is able to fully rescue gas-1 mutants, indicating that T26A5.3 encodes a fully functional mitochondrial 49 kDa subunit that may rescue gas-1(fc21) mutants from lethality; mutants homozygous for a T26A5.3 deletion have normal anesthetic sensitivity and normal sensitivity to oxygen (unlike gas-1 mutants) but a shortened lifespan at normal laboratory oxygen levels (20%); animals doubly mutant for gas-1 and T26A5.3 have maternal-effect lethality, but sterile surviving parents are abnormally long-lived (2.7 times longer than wild-type and 4.2 times longer than gas-1 mutants); double mutants remain hypersensitive to oxygen.
46	syp-1	F26D2.2	n/a	chrV 16,406,704	C. elegans SYP-1 protein ; contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_7, whole genome shotgun sequence.; TR:A0DYW0
47	clec-67	F56D6.2	n/a	chrIV 3,923,599	C. elegans CLEC-67 protein; contains similarity to Pfam domain PF00059 Lectin C-type domain contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
48	T10H9.3	T10H9.3	n/a	chrV 6,654,528	contains similarity to Interpro domains IPR010989 (t-SNARE), IPR000727 (Target SNARE coiled-coil region)
49	ZC116.3	ZC116.3	n/a	chrV 12,620,623	ZC116.3 is orthologous to the human gene CUBILIN (CUBN; OMIM:602997), which when mutated leads to hereditary megaloblastic anaemia 1 (OMIM:261100).
50	C45G9.1	C45G9.1	n/a	chrIII 5,075,294	contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core)