UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F53F10.3	F53F10.3	2e-78	chrI 3,827,677	contains similarity to Pfam domain PF03650 Uncharacterised protein family (UPF0041) contains similarity to Interpro domain IPR005336 (Protein of unknown function UPF0041)
2	srh-70	T21B4.9	n/a	chrII 12,517,220	C. elegans SRH-70 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
3	C54F6.12	C54F6.12	n/a	chrV 7,537,395
4	scl-27	ZK6.3	n/a	chrV 400,930	C. elegans SCL-27 protein; contains similarity to Pfam domain PF00188 SCP-like extracellular protein contains similarity to Interpro domains IPR014044 (SCP-like extracellular), IPR001283 (Allergen V5/Tpx-1 related)
5	srx-10	R10D12.4	n/a	chrV 13,945,845	C. elegans SRX-10 protein; contains similarity to Pfam domain PF08560 Protein of unknown function (DUF1757) contains similarity to Interpro domain IPR013869 (Protein of unknown function DUF1757)
6	F56A8.5	F56A8.5	n/a	chrIII 13,266,279	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
7	rab-39	D2013.1	n/a	chrII 9,322,411	rab-39 encodes a small, monomeric Rab GTPase that is most closely related to the human and Drosophila Rab39 GTPases; by homology, RAB-39 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis; however, as loss of rab-39 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-39 in C. elegans development and/or behavior is not yet known.
8	hlh-12	C28C12.8	n/a	chrIV 8,478,993	C. elegans HLH-12 protein; contains similarity to Pfam domain PF00010 Helix-loop-helix DNA-binding domain contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR011598 (Helix-loop-helix DNA-binding), IPR002418 (Transcription regulator Myc)
9	D1022.5	D1022.5	n/a	chrII 7,458,058
10	K09H9.1	K09H9.1	n/a	chrI 3,154,202	contains similarity to Pfam domain PF06542 Protein of unknown function (DUF1114) contains similarity to Interpro domain IPR009497 (Protein of unknown function DUF1114)
11	srv-22	H04M03.9	n/a	chrIV 5,879,196	C. elegans SRV-22 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
12	tag-242	C14A4.1	n/a	chrII 10,580,395	C. elegans TAG-242 protein; contains similarity to Pfam domain PF03130 PBS lyase HEAT-like repeat contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR004155 (PBS lyase HEAT-like repeat), IPR000357 (HEAT), IPR016024 (Armadillo-type fold)
13	ZK262.9	ZK262.9	n/a	chrV 18,440,924	contains similarity to Brachydanio rerio Similar to formin binding protein 3.; TR:Q7ZUE4
14	B0284.4	B0284.4	n/a	chrIII 4,386,243	contains similarity to Homo sapiens similar to forkhead-associated (FHA) phosphopeptide binding domain 1; ENSEMBL:ENSP00000318812
15	K11H12.6	K11H12.6	n/a	chrIV 667,977
16	nas-33	K04E7.3	n/a	chrX 6,453,429	C. elegans NAS-33 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain) , PF01400 (Astacin (Peptidase family M12A)) contains similarity to Interpro domains IPR000884 (Thrombospondin, type I), IPR000742 (EGF-like, type 3), IPR006030 (Molluscan rhodopsin C-terminal tail), IPR006025 (Peptidase M, neutral zinc metallopeptidases, zinc-binding site), IPR000694 (Proline-rich region), IPR001506 (Peptidase M12A, astacin), IPR006026 (Peptidase, metallopeptidases), IPR000859 (CUB), IPR013032 (EGF-like region, conserved site)
17	F21F8.2	F21F8.2	n/a	chrV 8,275,167	contains similarity to Pfam domain PF00026 Eukaryotic aspartyl protease contains similarity to Interpro domains IPR009007 (Peptidase aspartic, catalytic), IPR001461 (Peptidase A1)
18	spp-11	T25D10.3	n/a	chrII 6,406,317	C. elegans SPP-11 protein; contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR011001 (Saposin-like), IPR008139 (Saposin B)
19	ZK632.9	ZK632.9	n/a	chrIII 9,825,065	contains similarity to Barley yellow dwarf virus Coat protein.; SW:COAT_BYDVN
20	nhr-233	Y32B12B.6	n/a	chrV 16,570,335	C. elegans NHR-233 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
21	Y37A1B.8	Y37A1B.8	n/a	chrIV 14,022,381	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
22	sra-11	F44F4.13	n/a	chrII 10,909,485	sra-11 encodes an orphan, G protein-coupled seven-transmembrane receptor; SRA-11 is expressed in three classes of interneurons, AIA, AIY, and AVB throughout larval and adult stages, and analysis of sra-11 mutations indicates that sra-11 activity in AIY is essential for olfactory imprinting; sra-11 expression in AIY is positively regulated by the TTX-3 and CEH-23 homeodomain proteins, with TTX-3 required for both initiation and maintenance of expression and CEH-23 required solely for maintenance.
23	fbxa-98	C08F11.5	n/a	chrIV 13,634,329	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
24	C47A10.5	C47A10.5	n/a	chrV 17,775,721	C47A10.5 encodes a D-aspartate oxidase (DASPO), paralogous to F18E3.7 and F20H11.5; recombinant C47A10.5 protein has DASPO acvitity on acidic D-amino acid substrates (e.g., D-aspartate, D-glutamate, or N-methyl-D-aspartate/NMDA), with highest catalytic efficiency on D-glutamate; since the C-terminal residues of C47A10.5 match the PTS1 consensus sequence, C47A10.5 is predicted to be peroxisomal.
25	F58E2.3	F58E2.3	n/a	chrIV 3,468,626	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
26	srx-128	F55B12.7	n/a	chrV 13,838,056	C. elegans SRX-128 protein ;
27	fbxa-88	F10A3.2	n/a	chrV 16,142,535	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
28	C18B2.2	C18B2.2	n/a	chrX 3,625,928	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
29	F52E10.4	F52E10.4	n/a	chrX 16,286,357	contains similarity to Homo sapiens Zinc finger protein 277; ENSEMBL:ENSP00000006035
30	sre-7	K02E11.2	n/a	chrV 14,245,132	C. elegans SRE-7 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
31	D2007.1	D2007.1	n/a	chrIII 8,155,633
32	C54G10.1	C54G10.1	n/a	chrV 14,641,219	contains similarity to Homo sapiens similar to secreted gel-forming mucin; ENSEMBL:ENSP00000328427
33	ZC132.4	ZC132.4	n/a	chrV 4,302,829	contains similarity to Uukuniemi virus Envelope glycoprotein precursor (GP) (M polyprotein) [Contains:sGlycoprotein G1; Glycoprotein G2].; SW:P09613
34	C47D12.5	C47D12.5	n/a	chrII 11,685,843
35	Y57G7A.8	Y57G7A.8	n/a	chrII 1,291,464
36	K12B6.6	K12B6.6	n/a	chrV 6,294,114
37	Y40H7A.9	Y40H7A.9	n/a	chrIV 15,207,561	contains similarity to Pfam domains PF01461 (7TM chemoreceptor) , PF00112 (Papain family cysteine protease) contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR013128 (Peptidase C1A, papain), IPR000668 (Peptidase C1A, papain C-terminal)
38	math-7	C16C4.12	n/a	chrII 1,885,961	C. elegans MATH-7 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
39	F26H9.4	F26H9.4	n/a	chrI 9,306,326	contains similarity to Pfam domain PF01467 Cytidylyltransferase contains similarity to Interpro domains IPR005248 (Probable nicotinate-nucleotide adenylyltransferase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR004820 (Cytidylyltransferase)
40	srh-278	T09F5.8	n/a	chrV 15,171,028	C. elegans SRH-278 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
41	F21H12.3	F21H12.3	n/a	chrII 6,082,723
42	F59H6.6	F59H6.6	n/a	chrII 2,011,980	contains similarity to Interpro domain IPR009057 (Homeodomain-like)
43	T11F8.2	T11F8.2	n/a	chrIV 5,477,982
44	B0507.9	B0507.9	n/a	chrV 8,765,471
45	T01C8.3	T01C8.3	n/a	chrX 16,781,536
46	F31B9.1	F31B9.1	n/a	chrX 15,912,318	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002286 (P2 purinoceptor), IPR006121 (Heavy metal transport/detoxification protein), IPR000276 (GPCR, rhodopsin-like)
47	F58A3.3	F58A3.3	n/a	chrX 11,012,975	contains similarity to Mus musculus Glucosidase II beta-subunit (Fragment).; TR:Q9R1N5
48	T05A7.1	T05A7.1	n/a	chrII 4,678,765
49	R160.2	R160.2	n/a	chrX 4,376,697
50	C10G8.3	C10G8.3	n/a	chrV 5,313,573	contains similarity to Pfam domain PF00014 Kunitz/Bovine pancreatic trypsin inhibitor domain contains similarity to Interpro domain IPR002223 (Proteinase inhibitor I2, Kunitz metazoa)