UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F53C3.5	F53C3.5	2e-107	chrII 3,900,316	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
2	nhr-79	T26H2.9	n/a	chrV 19,209,750	C. elegans NHR-79 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR001723 (Steroid hormone receptor), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
3	EGAP4.1	EGAP4.1	n/a	chrX 8,727,142
4	B0294.1	B0294.1	n/a	chrX 1,897,093
5	F53C3.3	F53C3.3	3e-57	chrII 3,903,698	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
6	F58B4.3	F58B4.3	n/a	chrV 10,930,269	contains similarity to Homo sapiens similar to bA88M19.1 (EGF-like-domain multiple 5 protein); ENSEMBL:ENSP00000223618
7	W02A11.3	W02A11.3	n/a	chrI 12,739,603	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR008984 (SMAD/FHA domain), IPR001841 (Zinc finger, RING-type), IPR000694 (Proline-rich region), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR011016 (Zinc finger, variant RING-type)
8	F40A3.4	F40A3.4	n/a	chrV 7,876,231
9	D1069.1	D1069.1	n/a	chrII 341,505	contains similarity to Interpro domain IPR004032 (PMP-22/EMP/MP20)
10	ZC168.2	ZC168.2	n/a	chrIV 10,728,759	contains similarity to Pfam domain PF01147 Crustacean CHH/MIH/GIH neurohormone family contains similarity to Interpro domain IPR001166 (Crustacean neurohormone)
11	gpc-1	K02A4.2	n/a	chrX 12,881,921	The gpc-1 gene encodes a heterotrimeric guanine nucleotide-binding protein gamma subunit, expressed specifically in sensory neurons, that is involved in taste adaptation.
12	Y44A6D.2	Y44A6D.2	n/a	chrV 20,785,516	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
13	numr-2	F08F8.1	n/a	chrIII 7,365,432	C. elegans NUMR-2 protein ;
14	F53C3.4	F53C3.4	2e-55	chrII 3,902,067	contains similarity to Pfam domain PF01705 CX module contains similarity to Interpro domain IPR002619 (Protein of unknown function CX)
15	hil-3	F22F1.1	n/a	chrX 8,159,562	C. elegans HIL-3 protein; contains similarity to Pfam domain PF00538 linker histone H1 and H5 family contains similarity to Interpro domains IPR003993 (Treacher Collins syndrome, treacle), IPR011991 (Winged helix repressor DNA-binding), IPR005819 (Histone H5), IPR005818 (Histone H1/H5)
16	C17H12.10	C17H12.10	n/a	chrIV 6,808,208
17	F20C5.6	F20C5.6	n/a	chrIV 8,772,362	contains similarity to Trichomonas vaginalis G3 Viral A-type inclusion protein, putative.; TR:A2DLG0
18	E02C12.10	E02C12.10	n/a	chrV 9,376,724	contains similarity to Pfam domains PF02958 (Domain of unknown function (DUF227)) , PF07914 (Protein of unknown function (DUF1679)) (2)contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species), IPR004119 (Protein of unknown function DUF227), IPR015897 (CHK kinase-like)
19	C31H5.5	C31H5.5	n/a	chrI 9,048,863	contains similarity to Mus musculus Eukaryotic translation initiation factor 2 subunit 2 (Eukaryoticstranslation initiation factor 2 beta subunit) (eIF-2-beta).; SW:IF2B_MOUSE
20	nlp-5	F35C11.1	n/a	chrII 8,243,059	C. elegans NLP-5 protein ;
21	ttr-26	Y51A2D.11	n/a	chrV 18,559,496	C. elegans TTR-26 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domains IPR001534 (Transthyretin-like), IPR008964 (Invasin/intimin cell-adhesion)
22	fbxa-44	F09C6.2	n/a	chrV 16,889,957	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
23	pdl-1	C27H5.1	n/a	chrII 7,184,432	C. elegans PDL-1 protein; contains similarity to Pfam domain PF05351 GMP-PDE, delta subunit contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR017287 (Retinal rod rhodopsin-sensitive cGMP 3', 5'-cyclic phosphodiesterase, delta subunit), IPR008015 (GMP phosphodiesterase, delta subunit)
24	glb-27	W01C9.5	n/a	chrII 8,548,030	glb-27 encodes a globin whose expression is probably induced by anoxia in a HIF-1-dependent manner; glb-27 transcription is higher in L3 and dauers than in young adults; glb-27 has no obvious function in mass RNAi assays.
25	F35B3.1	F35B3.1	n/a	chrX 17,016,472	contains similarity to Interpro domain IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2)
26	ins-30	ZC334.2	n/a	chrI 14,035,617	ins-30 encodes an insulin-like peptide.
27	ZC443.2	ZC443.2	n/a	chrV 12,810,803	contains similarity to Listeria innocua Hypothetical protein lin2372.; TR:Q929A5
28	T27E4.1	T27E4.1	n/a	chrV 9,093,497	contains similarity to Interpro domain IPR008973 (C2 calcium/lipid-binding region, CaLB)
29	C15C7.4	C15C7.4	n/a	chrX 3,146,822
30	R10H10.4	R10H10.4	n/a	chrIV 10,394,780	contains similarity to Arabidopsis thaliana T15B16.1 protein.; TR:Q9ZSH8
31	C01G12.1	C01G12.1	n/a	chrII 14,574,969	contains similarity to Interpro domains IPR005386 (EDG-8 sphingosine 1-phosphate receptor), IPR004210 (BESS motif), IPR006578 (MADF)
32	ttr-23	T21C9.8	n/a	chrV 10,589,462	C. elegans TTR-23 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
33	T05H10.3	T05H10.3	n/a	chrII 8,049,736
34	R07E3.7	R07E3.7	n/a	chrX 10,343,094	contains similarity to Borrelia burgdorferi Outer surface protein C (Fragment).; TR:Q93Q85
35	R05A10.2	R05A10.2	n/a	chrIV 14,178,019	contains similarity to Saccharomyces cerevisiae Actin-binding protein that stabilizes actin filaments; Tpm1, the main tropomyosin, is required for the formation and stability of actin cables in vivo which direct polarized cell growth and the distribution of several organelles.; SGD:YNL079C
36	srg-68	ZC317.5	n/a	chrV 5,464,597	C. elegans SRG-68 protein ;
37	F40F9.10	F40F9.10	n/a	chrV 9,712,554	contains similarity to Pfam domain PF02475 Met-10+ like-protein contains similarity to Interpro domain IPR003402 (Protein of unknown function Met10)
38	Y51A2D.14	Y51A2D.14	n/a	chrV 18,582,771
39	C33D9.5	C33D9.5	n/a	chrIV 8,779,611	C33D9.5 encodes a predicted coiled-coil protein; as loss of C33D9.5 activity via large-scale RNAi results in no obvious abnormalities, the precise role of C33D9.5 in C. elegans development and/or behavior is not yet known.
40	C55A1.6	C55A1.6	n/a	chrV 15,648,434	contains similarity to Lactococcus lactis Protein maturation protein.; TR:Q9CEV9
41	F59D6.1	F59D6.1	n/a	chrV 3,051,786
42	C33A12.4	C33A12.4	n/a	chrIV 9,510,301	contains similarity to Homo sapiens Acidic leucine-rich nuclear phosphoprotein 32 family member E; ENSEMBL:ENSP00000324074
43	pag-3	F45B8.4	n/a	chrX 14,952,780	pag-3 encodes a C2H2 zinc-finger protein orthologous to Drosophila SENSELESS, and to human GFI1 (OMIM:600871, mutated in neutropenia) and GFI1B (OMIM:604383); pag-3 is expressed in neurons (touch receptors, BDU interneurons, ventral cord motor neurons, and others); PAG-3 is required to repress the touch neuron-specific genes mec-4 and mec-7 in BDU neurons, but since this repression does not occur in touch neurons (which also have PAG-3), PAG-3 may require another protein or proteins for repression (such as PRK-1 or PRK-2, the C. elegans orthologs of human PIM-1); PAG-3 is also needed for normal neuroblast lineages in the ventral nerve cord, and for normal locomotion; pag-3 mutants have a reverse kinker uncoordinated phenotype, and occasional axonal guidance errors in the PLM and BDU neurons; PAG-3's similarity to GFI1 and GFIB falls mainly within residues 159-261, but within these residues (which overlap PAG-3's five zinc-finger domains in residues 126-265) the amino acid identity is 87%; pag-3 transcript quantities are doubled in pag-3 mutants, suggesting that PAG-3 inhibits its own gene.
44	F10E9.1	F10E9.1	n/a	chrIII 8,323,702
45	pmk-1	B0218.3	n/a	chrIV 8,149,748	pmk-1 encodes a mitogen-activated protein kinase (MAPK), orthologous to human p38 MAPK (OMIM:600289), that is required for eliciting gonadal programmed cell death in response to Salmonella enterica infection; PMK-1 lies upstream of CED-9, a negative regulator of apoptosis, in the programmed cell death pathway.
46	F59G1.4	F59G1.4	n/a	chrII 5,900,345	contains similarity to Interpro domain IPR016024 (Armadillo-type fold)
47	fkh-3	C29F7.4	n/a	chrX 13,422,576	fkh-3 encodes one of 15 C. elegans forkhead transcription factors; loss of fkh-3 activity via RNAi, either singly or in combination with the closely related fkh-4 and fkh-5 genes, results in no obvious abnormalities, suggesting functional redundancy with other genes; an FKH-3 reporter fusion is expressed in most, but not all, cells of the early embryo from the 20- to the 200-cell stage.
48	tsp-4	F53B2.2	n/a	chrIV 12,519,672	C. elegans TSP-4 protein; contains similarity to Pfam domain PF00335 Tetraspanin family contains similarity to Interpro domains IPR000301 (CD9/CD37/CD63 antigen), IPR008952 (Tetraspanin)
49	cah-6	T28F2.3	n/a	chrI 3,630,102	cah-6 encodes a predicted carbonic anhydrase.
50	sox-3	F40E10.2	n/a	chrX 14,692,543	C. elegans SOX-3 protein; contains similarity to Pfam domain PF00505 HMG (high mobility group) box contains similarity to Interpro domains IPR000910 (High mobility group box, HMG1/HMG2), IPR009071 (High mobility group box, HMG), IPR000135 (High mobility group box, HMG1/HMG2, subgroup)