UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	amt-2	F49E11.3	0	chrIV 13,044,619	amt-2 encodes a transmembrane protein that is one of four C. elegans members of the ammonium transporter AMT/Rh family of proteins predicted to function in transport of ammonium ions across the plasma membrane.
2	E02C12.12	E02C12.12	n/a	chrV 9,380,457	contains similarity to Pfam domain PF07914 Protein of unknown function (DUF1679) contains similarity to Interpro domain IPR012877 (Protein of unknown function DUF1679, Caenorhabditis species)
3	T05E11.2	T05E11.2	n/a	chrIV 11,115,881	T05E11.2 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; T05E11.2 is worm-specific, with a with highly divergent sequence lacking obvious homologs; T05E11.2 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
4	C16D9.6	C16D9.6	n/a	chrV 8,249,274	contains similarity to Drosophila melanogaster Flybase gene name is CG9520-PA;; FLYBASE:CG9520
5	dmd-4	C27C12.6	n/a	chrX 14,859,502	C. elegans DMD-4 protein; contains similarity to Pfam domains PF00751 (DM DNA binding domain) , PF03474 (DMRTA motif) contains similarity to Interpro domains IPR005173 (DMRTA motif), IPR001275 (DM DNA-binding)
6	F48B9.1	F48B9.1	n/a	chrX 2,183,370	contains similarity to Interpro domain IPR001220 (Legume lectin, beta domain)
7	srt-25	C16D9.7	n/a	chrV 8,257,371	C. elegans SRT-25 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
8	srh-192	ZC132.7	n/a	chrV 4,313,561	C. elegans SRH-192 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	ZK938.4	ZK938.4	n/a	chrII 9,835,995	contains similarity to Pfam domains PF00339 (Arrestin (or S-antigen), N-terminal domain) , PF02752 (Arrestin (or S-antigen), C-terminal domain) contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011022 (Arrestin-like, C-terminal), IPR014752 (Arrestin, C-terminal), IPR011021 (Arrestin-like, N-terminal)
10	F10D7.4	F10D7.4	n/a	chrX 17,380,140
11	srg-13	T23F11.5	n/a	chrIII 4,673,171	C. elegans SRG-13 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domains IPR001411 (Tetracycline resistance protein, TetB), IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
12	F28F9.3	F28F9.3	n/a	chrIV 3,831,378
13	srb-19	C54F6.11	n/a	chrV 7,518,912	C. elegans SRB-19 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
14	F31B9.2	F31B9.2	n/a	chrX 15,919,200	contains similarity to Mus musculus Radixin (ESP10).; SW:RADI_MOUSE
15	F58B4.2	F58B4.2	n/a	chrV 10,918,030	contains similarity to Pfam domain PF00173 Cytochrome b5-like Heme/Steroid binding domain contains similarity to Interpro domain IPR001199 (Cytochrome b5)
16	str-217	Y102A5C.28	n/a	chrV 16,999,587	C. elegans STR-217 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
17	K03A11.4	K03A11.4	n/a	chrX 13,080,030	contains similarity to Pfam domain PF02995 Protein of unknown function (DUF229) contains similarity to Interpro domains IPR004245 (Protein of unknown function DUF229), IPR017850 (Alkaline-phosphatase-like, core domain)
18	K04F1.11	K04F1.11	n/a	chrV 1,660,979	contains similarity to Pfam domain PF01030 Receptor L domain contains similarity to Interpro domain IPR000494 (EGF receptor, L domain)
19	gst-18	F37B1.7	n/a	chrII 13,630,251	C. elegans GST-18 protein; contains similarity to Pfam domains PF00043 (Glutathione S-transferase, C-terminal domain) , PF02798 (Glutathione S-transferase, N-terminal domain) contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR004046 (Glutathione S-transferase, C-terminal), IPR004045 (Glutathione S-transferase, N-terminal), IPR010987 (Glutathione S-transferase, C-terminal-like)
20	C01A2.6	C01A2.6	n/a	chrI 13,382,132	contains similarity to Dictyostelium discoideum Putative uncharacterized protein.; TR:Q54BK4
21	C56G7.3	C56G7.3	n/a	chrIII 3,391,206	contains similarity to Pfam domain PF04727 ELMO/CED-12 family contains similarity to Interpro domain IPR006816 (Engulfment and cell motility, ELM)
22	F16F9.1	F16F9.1	n/a	chrX 8,448,780	contains similarity to Interpro domain IPR006629 (LPS-induced tumor necrosis factor alpha factor)
23	aat-7	F54D12.3	n/a	chrII 1,389,233	aat-7 encodes a predicted amino acid transporter catalytic subunit; unlike catalytic subunits in other organisms, however, AAT-7 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-7 does not require this residue for heterodimer formation or alternatively, does not require the glycoprotein subunit for function.
24	F16C3.2	F16C3.2	n/a	chrI 10,152,680	contains similarity to Clostridium acetobutylicum DNA repair protein recN, ATPase.; TR:Q97HD9
25	R10F2.5	R10F2.5	n/a	chrIII 2,924,200	contains similarity to Interpro domain IPR000443 (Islet amyloid polypeptide)
26	Y51A2B.5	Y51A2B.5	n/a	chrV 18,390,243	contains similarity to Interpro domain IPR014044 (SCP-like extracellular)
27	K07H8.8	K07H8.8	n/a	chrIV 8,267,574	contains similarity to Pfam domain PF04590 Protein of unknown function, DUF595 contains similarity to Interpro domain IPR007669 (Protein of unknown function DUF595)
28	H40L08.3	H40L08.3	n/a	chrX 15,073,031	contains similarity to Trichomonas vaginalis G3 Viral A-type inclusion protein, putative.; TR:A2EJ43
29	F18E9.4	F18E9.4	n/a	chrX 8,582,026
30	sre-43	W07G1.6	n/a	chrII 13,967,710	C. elegans SRE-43 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domains IPR004151 (C. elegans Sre G protein-coupled chemoreceptor), IPR000344 (Nematode chemoreceptor, Sra)
31	C04F12.8	C04F12.8	n/a	chrI 9,698,564	contains similarity to Pfam domain PF00782 Dual specificity phosphatase, catalytic domain contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000387 (Protein-tyrosine phosphatase), IPR000340 (Protein-tyrosine phosphatase, dual specificity)
32	fbxa-213	Y37H2C.3	n/a	chrV 18,268,033	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
33	hlh-14	C18A3.8	n/a	chrII 5,738,759	hlh-14 encodes a basic helix-loop-helix (bHLH) transcription factor that is one of five C. elegans Achaete-Scute family homologs; HLH-14 activity is required generally for normal egg-laying, movement, body morphology, and larval development; more specifically, HLH-14 is required for proper neuronal development, particularly for regulation of the asymmetric cell division that gives rise to the PVQ/HSN/PHB neuroblasts and for normal differentiation of these neuroblast descendants, including their cell division patterns, migrations, and neurotransmitter expression; in specifying neuronal cell fates, genetic evidence suggests that hlh-14 acts together with hlh-2, which encodes the C. elegans E/Daughterless ortholog; HLH-14 is expresed exclusively in the embryo and detected in the left and right PVQ/HSN/PHB neuroblasts and their descendants, as well as in other cells identified, tentatively, as anterior neuroblasts and posterior neuroblasts such as Caapa.
34	W03F9.4	W03F9.4	n/a	chrV 149,461	contains similarity to Pfam domain PF00755 Choline/Carnitine o-acyltransferase contains similarity to Interpro domains IPR000542 (Acyltransferase ChoActase/COT/CPT), IPR001644 (C3A-anaphylatoxin receptor)
35	spe-38	Y52B11A.1	n/a	chrI 10,965,401	C. elegans SPE-38 protein ;
36	F02E11.3	F02E11.3	n/a	chrII 3,273,416	contains similarity to Interpro domain IPR010993 (Sterile alpha motif homology)
37	str-150	T03E6.4	n/a	chrV 16,584,195	C. elegans STR-150 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
38	F49C12.1	F49C12.1	n/a	chrIV 9,295,603	contains similarity to Pfam domain PF03407 Protein of unknown function (DUF271) contains similarity to Interpro domain IPR005069 (Protein of unknown function DUF271)
39	W04G5.3	W04G5.3	n/a	chrI 11,629,776	contains similarity to Arabidopsis thaliana Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19).; SW:WR19_ARATH
40	C56G2.5	C56G2.5	n/a	chrIII 6,323,209	contains similarity to Interpro domains IPR011009 (Protein kinase-like), IPR008973 (C2 calcium/lipid-binding region, CaLB)
41	srbc-56	F54B8.12	n/a	chrV 15,831,110	C. elegans SRBC-56 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
42	K02D10.3	K02D10.3	n/a	chrIII 8,771,549
43	asic-2	T28F4.2	n/a	chrI 7,481,759	C. elegans ASIC-2 protein; contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domains IPR001873 (Na+ channel, amiloride-sensitive), IPR004726 (Degenerin)
44	C44B11.1	C44B11.1	n/a	chrIII 3,156,820	contains similarity to Pfam domain PF06905 Fas apoptotic inhibitory molecule (FAIM1) contains similarity to Interpro domain IPR010695 (Fas apoptotic inhibitory molecule)
45	srh-142	T08G3.3	n/a	chrV 16,460,149	C. elegans SRH-142 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
46	M03D4.6	M03D4.6	n/a	chrIV 6,144,282	contains similarity to Pfam domain PF02171 Piwi domain contains similarity to Interpro domains IPR003165 (Stem cell self-renewal protein Piwi), IPR012337 (Polynucleotidyl transferase, Ribonuclease H fold)
47	F15D3.8	F15D3.8	n/a	chrI 11,580,950	contains similarity to Methanocaldococcus jannaschii Chromosome partition protein smc homolog.; SW:Q59037
48	ZK112.5	ZK112.5	n/a	chrIII 7,738,805
49	Y116A8C.43	Y116A8C.43	n/a	chrIV 17,089,705	contains similarity to Bacillus thuringiensis Pesticidial crystal protein cry12Aa (Insecticidal delta-endotoxinsCryXIIA(a)) (Crystaline entomocidal protoxin) (142 kDa crystalsprotein).; SW:CCAA_BACTU
50	F37C4.1	F37C4.1	n/a	chrIV 3,890,907	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)