UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F48A9.2	F48A9.2	3e-107	chrI 6,593,082
2	T28H10.1	T28H10.1	n/a	chrV 12,504,477	contains similarity to Pfam domain PF01648 4'-phosphopantetheinyl transferase superfamily contains similarity to Interpro domain IPR008278 (4'-phosphopantetheinyl transferase)
3	nhr-188	F47C10.7	n/a	chrV 3,857,080	C. elegans NHR-188 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
4	Y38H6C.21	Y38H6C.21	n/a	chrV 20,550,079	contains similarity to Aquifex aeolicus Flagellar biosynthetic protein flhB.; SW:FLHB_AQUAE
5	W04D12.1	W04D12.1	n/a	chrIII 5,837,006
6	srx-79	C01G10.2	n/a	chrV 15,098,590	C. elegans SRX-79 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
7	srd-32	T19H12.5	n/a	chrV 4,867,995	C. elegans SRD-32 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR003945 (NADH-plastoquinone oxidoreductase, chain 5)
8	srh-227	C35D6.2	n/a	chrIV 16,343,304	C. elegans SRH-227 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
9	C43H6.6	C43H6.6	n/a	chrX 2,397,074	contains similarity to Pfam domains PF00059 (Lectin C-type domain) , PF00431 (CUB domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
10	srg-7	C18F10.8	n/a	chrIII 6,267,278	C. elegans SRG-7 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
11	B0462.1	B0462.1	n/a	chrV 18,326,871	contains similarity to Pfam domain PF05075 Protein of unknown function (DUF684) contains similarity to Interpro domain IPR007767 (Protein of unknown function DUF684)
12	F58G4.3	F58G4.3	n/a	chrV 8,105,172	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
13	srsx-2	F20E11.2	n/a	chrV 17,437,669	C. elegans SRSX-2 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
14	B0410.1	B0410.1	n/a	chrX 2,894,901
15	Y39A1A.8	Y39A1A.8	n/a	chrIII 10,627,062	contains similarity to Pfam domain PF03083 MtN3/saliva family contains similarity to Interpro domain IPR004316 (MtN3 and saliva related transmembrane protein)
16	F27E5.1	F27E5.1	n/a	chrII 10,140,416	contains similarity to Pfam domain PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family contains similarity to Interpro domains IPR003199 (Choloylglycine hydrolase), IPR016699 (Acid ceramidase-like)
17	srab-18	T11A5.3	n/a	chrV 9,870,635	C. elegans SRAB-18 protein; contains similarity to Interpro domain IPR002184 (Serpentine beta receptor)
18	T15D6.12	T15D6.12	n/a	chrI 12,400,253	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
19	fbxa-195	R09B5.1	n/a	chrV 1,435,696	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
20	B0244.5	B0244.5	n/a	chrIII 5,745,987
21	str-94	F07C3.8	n/a	chrV 9,248,642	C. elegans STR-94 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR005384 (Duffy antigen/chemokine receptor)
22	F46B3.15	F46B3.15	n/a	chrV 20,628,725	contains similarity to Interpro domain IPR003645 (Follistatin-like, N-terminal)
23	sri-2	F36G9.9	n/a	chrV 15,964,503	C. elegans SRI-2 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domains IPR003002 (7TM chemoreceptor, subfamily 1), IPR002208 (SecY protein)
24	M163.6	M163.6	n/a	chrX 14,463,353	contains similarity to Xenopus laevis Hypothetical protein.; TR:Q7SZA3
25	B0228.6	B0228.6	n/a	chrII 7,754,791
26	B0207.10	B0207.10	n/a	chrI 5,959,278
27	K09C4.9	K09C4.9	n/a	chrX 3,271,553
28	T08D2.6	T08D2.6	n/a	chrX 180,977	contains similarity to Homo sapiens Protein YIPF4; ENSEMBL:ENSP00000238831
29	T14G8.2	T14G8.2	n/a	chrX 12,858,701	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
30	C32B5.3	C32B5.3	n/a	chrII 981,863
31	F46F5.15	F46F5.15	n/a	chrII 788,813
32	srw-137	H27D07.4	n/a	chrV 2,943,264	C. elegans SRW-137 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
33	math-7	C16C4.12	n/a	chrII 1,885,961	C. elegans MATH-7 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
34	sre-33	W05H5.6	n/a	chrII 12,453,974	C. elegans SRE-33 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
35	ZK632.9	ZK632.9	n/a	chrIII 9,825,065	contains similarity to Barley yellow dwarf virus Coat protein.; SW:COAT_BYDVN
36	rnt-1	B0414.2	n/a	chrI 5,782,356	rnt-1 encodes a transcription factor that is the sole C. elegans member of the RUNX family of transcriptional regulators; rnt-1 activity is required for several developmental processes, including regulation of hypodermal seam cell proliferation and proper development of the male tail; RNT-1 can physically interact with SMA-4 and regulates, either directly or indirectly, expression of tlp-1 and cki-1, which encode a C2H2 zinc finger and CDK inhibitor, respectively; RNT-1::GFP reporter fusions are reportedly expressed in the nuclei of hypodermal seam cells, intestinal cells, body wall muscles, and, in males, cells derived from the V5, V6 and T lineages that give rise to the sensory rays.
37	sre-39	F10G7.7	n/a	chrII 4,688,304	C. elegans SRE-39 protein; contains similarity to Pfam domain PF03125 C. elegans Sre G protein-coupled chemoreceptor contains similarity to Interpro domain IPR004151 (C. elegans Sre G protein-coupled chemoreceptor)
38	ZC196.1	ZC196.1	n/a	chrV 8,744,495
39	T23B3.1	T23B3.1	n/a	chrI 6,718,630
40	F52E10.4	F52E10.4	n/a	chrX 16,286,357	contains similarity to Homo sapiens Zinc finger protein 277; ENSEMBL:ENSP00000006035
41	ZK1073.1	ZK1073.1	n/a	chrX 16,126,525	contains similarity to Pfam domain PF03096 Ndr family contains similarity to Interpro domain IPR004142 (Ndr)
42	F15D4.2	F15D4.2	n/a	chrII 13,216,307	contains similarity to Strongylocentrotus purpuratus Protein ENDO16 (Fragment).; SW:P13665
43	clec-179	C42D4.11	n/a	chrIV 7,183,961	C. elegans CLEC-179 protein; contains similarity to Pfam domain PF08277 PAN-like domain contains similarity to Interpro domains IPR006583 (CW), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
44	stdh-2	F11A5.12	n/a	chrV 16,224,881	stdh-2 encodes a putative steroid dehydrogenase required for normally short lifespan; STDH-2 is orthologous to human HSD17B3 (OMIM:605573, mutated in pseudohermaphroditism), HSD17B12 (OMIM:609574), and HSDL1, and paralogous to LET-767, STDH-1, and STDH-3/-4.
45	srj-29	F22B8.1	n/a	chrV 16,076,456	C. elegans SRJ-29 protein; contains similarity to Pfam domains PF00060 (Ligand-gated ion channel) , PF01094 (Receptor family ligand binding region) contains similarity to Interpro domains IPR001638 (Bacterial extracellular solute-binding protein, family 3), IPR015683 (Glutamate receptor-related), IPR001320 (Ionotropic glutamate receptor), IPR001828 (Extracellular ligand-binding receptor), IPR001508 (NMDA receptor)
46	ZC196.8	ZC196.8	n/a	chrV 8,721,706	contains similarity to Pfam domain PF04789 Protein of unknown function (DUF621) contains similarity to Interpro domain IPR006874 (Protein of unknown function DUF621)
47	pqn-92	Y75B8A.27	n/a	chrIII 12,309,726	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
48	ZK1240.6	ZK1240.6	n/a	chrII 2,322,661	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000315 (Zinc finger, B-box)
49	H43I07.1	H43I07.1	n/a	chrV 4,206,564	contains similarity to Interpro domains IPR010754 (Optic atrophy 3-like), IPR005819 (Histone H5)
50	F59B10.2	F59B10.2	n/a	chrII 10,508,511	contains similarity to Interpro domains IPR003993 (Treacher Collins syndrome, treacle), IPR005819 (Histone H5)