UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	sru-39	F46B6.11	7e-169	chrV 9,804,013	C. elegans SRU-39 protein; contains similarity to Pfam domain PF02688 Domain of unknown function DUF215 contains similarity to Interpro domain IPR003839 (Protein of unknown function DUF215)
2	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
3	Y51A2A.4	Y51A2A.4	n/a	chrV 18,291,106	contains similarity to Haemophilus influenzae High-affinity zinc uptake system protein znuA precursor.; SW:ZNUA_HAEIN
4	F46F5.14	F46F5.14	n/a	chrII 800,774	contains similarity to Pfam domain PF03314 Protein of unknown function, DUF273 contains similarity to Interpro domain IPR004988 (Protein of unknown function DUF273)
5	C31H5.6	C31H5.6	n/a	chrI 9,045,096	contains similarity to Pfam domains PF08840 (BAAT / Acyl-CoA thioester hydrolase C terminal) , PF04775 (Acyl-CoA thioester hydrolase / Bile acid-CoA amino acid N-acetyltransferase) contains similarity to Interpro domains IPR006862 (Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase), IPR014940 (BAAT/Acyl-CoA thioester hydrolase C-terminal), IPR016662 (Acyl-CoA thioesterase, long chain)
6	acr-19	C31H5.3	n/a	chrI 9,033,976	acr-19 encodes a predicted member of the alpha subunit family of nicotinic acetylcholine receptors.
7	srz-54	Y102A5C.25	n/a	chrV 16,981,243	C. elegans SRZ-54 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domain IPR002651 (Protein of unknown function DUF32)
8	K07C11.3	K07C11.3	n/a	chrV 8,207,597	contains similarity to Interpro domains IPR008993 (TIMP-like, OB-fold), IPR001820 (Proteinase inhibitor I35, tissue inhibitor of metalloproteinase), IPR001134 (Netrin, C-terminal)
9	rab-8	D1037.4	n/a	chrI 3,683,497	rab-8 encodes a rab related protein of the Ras GTPase superfamily that affects ovarian morphology and function, thereby affecting fertility; acts downstream of let-60 with respect to vulval development based on genetic analysis.
10	pgp-8	T21E8.3	n/a	chrX 10,861,813	pgp-8 encodes an ATP-binding protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily; PGP-8 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-8 activity via RNAi results in no obvious defects, the precise role of PGP-8 in C. elegans development and/or behavior is not yet known; pgp-8 promoter-gfp fusion proteins are expressed in adult head neurons.
11	F14B6.5	F14B6.5	n/a	chrI 12,240,474	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
12	C08F1.8	C08F1.8	n/a	chrII 1,806,228
13	T20D4.7	T20D4.7	n/a	chrV 3,409,192	contains similarity to Pfam domains PF08534 (Redoxin) , PF00578 (AhpC/TSA family) contains similarity to Interpro domains IPR011594 (Thioredoxin-like), IPR013740 (Redoxin), IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold), IPR000866 (Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen), IPR006662 (Thioredoxin-related)
14	srx-51	T10H4.9	n/a	chrV 15,282,706	C. elegans SRX-51 protein; contains similarity to Pfam domain PF01748 Caenorhabditis serpentine receptor-like protein contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR002651 (Protein of unknown function DUF32)
15	E03H4.4	E03H4.4	n/a	chrI 12,409,488	contains similarity to Pfam domain PF03385 Protein of unknown function, DUF288 contains similarity to Interpro domain IPR005049 (Protein of unknown function DUF288)
16	Y75B8A.11	Y75B8A.11	n/a	chrIII 12,188,150	contains similarity to Lymnaea stagnalis Neuropeptide Y precursor.; TR:Q9U0S9
17	srg-23	Y25C1A.11	n/a	chrII 3,095,026	C. elegans SRG-23 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
18	K02A11.3	K02A11.3	n/a	chrI 9,746,967	contains similarity to Homo sapiens Placental protein 11 precursor; ENSEMBL:ENSP00000229003
19	C16E9.1	C16E9.1	n/a	chrX 6,941,999	contains similarity to Pfam domain PF00092 von Willebrand factor type A domain contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR002035 (von Willebrand factor, type A)
20	T23B3.1	T23B3.1	n/a	chrI 6,718,630
21	T27E7.5	T27E7.5	n/a	chrIV 14,537,655	contains similarity to Bacillus stearothermophilus D-alanyl-D-alanine carboxypeptidase precursor (EC 3.4.16.4) (DD-speptidase) (DD-carboxypeptidase) (CPase) (PBP5).; SW:DACA_BACST
22	D2007.1	D2007.1	n/a	chrIII 8,155,633
23	F07G11.4	F07G11.4	n/a	chrV 7,293,758	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
24	F19B10.5	F19B10.5	n/a	chrII 3,656,709
25	dsc-1	C18B12.3	n/a	chrX 15,032,922	C. elegans DSC-1 protein; contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR012287 (Homeodomain-related), IPR001356 (Homeobox), IPR009057 (Homeodomain-like)
26	C04G6.5	C04G6.5	n/a	chrII 5,085,937	contains similarity to Pfam domain PF01679 Uncharacterized protein family UPF0057 contains similarity to Interpro domain IPR000612 (Protein of unknown function UPF0057)
27	H12D21.3	H12D21.3	n/a	chrV 14,886,000	contains similarity to Plasmodium cynomolgi Circumsporozoite protein precursor (CS).; SW:P08675
28	nhr-77	T15D6.6	n/a	chrI 12,384,994	C. elegans NHR-77 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
29	ttm-2	F26G1.4	n/a	chrII 4,765,267	C. elegans TTM-2 protein; contains similarity to Pfam domain PF00339 Arrestin (or S-antigen), N-terminal domain contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR011021 (Arrestin-like, N-terminal)
30	fbxb-86	T27E9.8	n/a	chrIII 13,478,975	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
31	T15D6.12	T15D6.12	n/a	chrI 12,400,253	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domain IPR008166 (Protein of unknown function DUF23)
32	ZC196.6	ZC196.6	n/a	chrV 8,727,690	contains similarity to Mycoplasma genitalium Protein P200.; SW:Q49429
33	str-171	T01G5.5	n/a	chrV 15,131,482	C. elegans STR-171 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
34	clec-249	Y51A2A.7	n/a	chrV 18,304,784	C. elegans CLEC-249 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
35	C03H5.5	C03H5.5	n/a	chrII 383,812	contains similarity to Xenopus laevis Eukaryotic translation initiation factor 3 subunit E-interactingsprotein (Eukaryotic translation initiation factor 3 subunit 6-sinteracting protein).; SW:Q8AVJ0
36	Y57G11C.18	Y57G11C.18	n/a	chrIV 14,841,760	contains similarity to Interpro domain IPR000767 (Disease resistance protein)
37	F27C8.3	F27C8.3	n/a	chrIV 9,595,409	contains similarity to Plasmodium falciparum Hypothetical protein.; TR:Q8ICY1
38	M04F3.5	M04F3.5	n/a	chrI 4,775,768	contains similarity to Pfam domain PF08397 IRSp53/MIM homology domain contains similarity to Interpro domain IPR013606 (IRSp53/MIM homology domain (IMD))
39	T27F2.2	T27F2.2	n/a	chrV 11,633,391	T27F2.2 encodes a homolog of human SIPA1/EHBP1L1 (OMIM:602180) and its paralogs.
40	bbs-8	T25F10.5	n/a	chrV 6,763,757	bbs-8 encodes a tetratricopeptide repeat (TPR)-containing protein that is orthologous to the human Bardet-Biedl syndrome protein, BBS8; in C. elegans, bbs-8 activity is required for cilia biogenesis and function; accordingly, bbs-8 mutant animals display odorant chemotaxis defects and exhibit both aberrant motility and abnormal localization of at least two intraflagellar transport (IFT) protein markers; a BBS-8::GFP translational fusion is expressed exclusively in ciliated head and tail neurons, where it localizes predominantly to the base of cilia, known as the ciliary transition zone; BBS-8::GFP is also observed moving bidirectionally (anterograde and retrograde) along the ciliary axoneme; DNA sequences upstream of bbs-8 contain X box DNA binding sites, suggesting that bbs-8 expression may be regulated by the DAF-19 RFX-type transcription factor.
41	F13C5.1	F13C5.1	n/a	chrX 603,249
42	K03H6.4	K03H6.4	n/a	chrIV 1,519,644
43	F57A8.7	F57A8.7	n/a	chrV 10,076,747	contains similarity to Pfam domain PF07690 Major Facilitator Superfamily contains similarity to Interpro domains IPR011701 (Major facilitator superfamily MFS-1), IPR016196 (MFS general substrate transporter)
44	C24F3.2	C24F3.2	n/a	chrIV 10,223,062	contains similarity to Pfam domain PF00782 Dual specificity phosphatase, catalytic domain contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016278 (Tyrosine protein phosphatase, dual specificity, 12), IPR000387 (Protein-tyrosine phosphatase), IPR000340 (Protein-tyrosine phosphatase, dual specificity)
45	T25D1.1	T25D1.1	n/a	chrX 16,520,133
46	ZK858.1	ZK858.1	n/a	chrI 9,119,671	contains similarity to Pfam domains PF03828 (Poly(A) polymerase) , PF01909 (Nucleotidyltransferase domain) contains similarity to Interpro domains IPR002934 (Nucleotidyltransferase), IPR002058 (PAP/25A-associated)
47	R03H4.5	R03H4.5	n/a	chrV 9,020,799	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
48	vps-33.1	B0303.9	n/a	chrIII 8,702,024	C. elegans VPS-33.1 protein; contains similarity to Pfam domain PF00995 Sec1 family contains similarity to Interpro domain IPR001619 (Sec1-like protein)
49	tag-242	C14A4.1	n/a	chrII 10,580,395	C. elegans TAG-242 protein; contains similarity to Pfam domain PF03130 PBS lyase HEAT-like repeat contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR004155 (PBS lyase HEAT-like repeat), IPR000357 (HEAT), IPR016024 (Armadillo-type fold)
50	C54C8.5	C54C8.5	n/a	chrI 12,454,277	contains similarity to Pfam domain PF03360 Glycosyltransferase family 43 contains similarity to Interpro domain IPR005027 (Glycosyl transferase, family 43)