UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F44D12.6	F44D12.6	9e-170	chrIV 10,034,055	contains similarity to Saccharomyces cerevisiae Protein of unknown function, mediates sensitivity to salt stress; interacts physically with the splicing factor Msl1p and also displays genetic interaction with MSL1; SGD:YNL091W
2	ZK1225.4	ZK1225.4	n/a	chrI 13,215,147	contains similarity to Oceanobacillus iheyensis Hypothetical protein.; TR:Q8EL91
3	Y54E2A.7	Y54E2A.7	n/a	chrII 14,772,378	contains similarity to Saccharomyces cerevisiae DNA Helicase; identified as an ExtraCellular Mutant; homology exists between ECM32 and two other identified DNA helicases, DNA2 and NAM7; SGD:YER176W
4	C01G6.2	C01G6.2	n/a	chrII 9,267,839	contains similarity to Interpro domain IPR008065 (FMRFamide-related peptide 2)
5	T04F3.3	T04F3.3	n/a	chrV 11,759,725	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
6	Y69E1A.8	Y69E1A.8	n/a	chrIV 10,967,320	contains similarity to Sulfolobus tokodaii Hypothetical protein ST0457.; TR:Q975F4
7	T21E12.5	T21E12.5	n/a	chrI 4,412,759
8	F42C5.5	F42C5.5	n/a	chrIV 7,293,350	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
9	C56C10.6	C56C10.6	n/a	chrII 6,580,455	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
10	F32B4.2	F32B4.2	n/a	chrI 11,513,362	contains similarity to Interpro domain IPR002056 (Protein import receptor MAS20)
11	C34D4.2	C34D4.2	n/a	chrIV 7,155,353	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
12	clec-123	Y25C1A.1	n/a	chrII 3,115,497	C. elegans CLEC-123 protein; contains similarity to Interpro domains IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
13	C49A1.3	C49A1.3	n/a	chrI 14,218,454	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
14	C47E8.1	C47E8.1	n/a	chrV 14,666,582
15	T28C6.5	T28C6.5	n/a	chrIV 8,822,105	contains similarity to Interpro domains IPR000909 (Phospholipase C, phosphatidylinositol-specific , X region), IPR000023 (Phosphofructokinase)
16	ZK1248.5	ZK1248.5	n/a	chrII 5,811,119	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR001940 (Peptidase S1C, HrtA/DegP2/Q/S), IPR009658 (Protein of unknown function DUF1248)
17	F46F5.9	F46F5.9	n/a	chrII 822,679	contains similarity to Interpro domain IPR000104 (Antifreeze protein, type I)
18	F02E9.3	F02E9.3	n/a	chrI 8,405,244	contains similarity to Saccharomyces cerevisiae Protein required for the decapping of mRNAs, functions to allow the production of active Dcp1p, contains a pyrophosphatase MutT motif and several alpha-helical leucine-rich motifs; SGD:YNL118C
19	Y18D10A.21	Y18D10A.21	n/a	chrI 12,930,221	contains similarity to Watermelon silver mottle virus L protein.; TR:Q9DSQ1
20	C08F11.10	C08F11.10	n/a	chrIV 13,648,607	contains similarity to Bacteroides thetaiotaomicron TPR-repeat-containing protein.; TR:Q8A5L6
21	F36H12.14	F36H12.14	n/a	chrIV 5,263,576
22	E03H12.7	E03H12.7	n/a	chrIV 4,988,167	contains similarity to Danio rerio Protein FAM133.; SW:A1A5I1
23	F36H12.10	F36H12.10	n/a	chrIV 5,254,079	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
24	AH6.3	AH6.3	n/a	chrII 9,519,577	contains similarity to Interpro domains IPR005819 (Histone H5), IPR001946 (Adrenergic receptor, alpha-2A)
25	ZC262.1	ZC262.1	n/a	chrIII 8,341,087
26	C15A11.2	C15A11.2	n/a	chrI 7,388,033	contains similarity to Cryptosporidium hominis Putative uncharacterized protein.; TR:Q5CF92
27	T20F5.5	T20F5.5	n/a	chrI 3,918,806	contains similarity to Homo sapiens Isoform E of Proteoglycan-4 precursor; ENSEMBL:ENSP00000356454
28	C34F11.2	C34F11.2	n/a	chrII 5,212,509
29	C15H7.3	C15H7.3	n/a	chrIII 9,651,090	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
30	F47B3.1	F47B3.1	n/a	chrI 3,972,934	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
31	ZK1251.3	ZK1251.3	n/a	chrIV 9,684,045	contains similarity to Pfam domain PF02544 3-oxo-5-alpha-steroid 4-dehydrogenase contains similarity to Interpro domains IPR001104 (3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal), IPR016636 (3-oxo-5-alpha-steroid 4-dehydrogenase)
32	F36H1.3	F36H1.3	n/a	chrIV 11,050,996	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000694 (Proline-rich region), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
33	B0252.5	B0252.5	n/a	chrII 6,917,923
34	Y106G6D.3	Y106G6D.3	n/a	chrI 10,113,137	contains similarity to Ensis minor Nuclear protein.; TR:Q24898
35	K06H7.8	K06H7.8	n/a	chrIII 8,097,370	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
36	M70.1	M70.1	n/a	chrIV 2,249,128	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domains IPR003004 (Bacterial general secretion pathway protein F), IPR003125 (Protein of unknown function WSN)
37	Y113G7C.1	Y113G7C.1	n/a	chrV 20,316,312	contains similarity to Pfam domains PF02206 (Domain of unknown function) , PF00102 (Protein-tyrosine phosphatase) contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000217 (Tubulin), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase), IPR003125 (Protein of unknown function WSN)
38	C06A8.6	C06A8.6	n/a	chrII 7,773,165	contains similarity to Pfam domain PF00560 Leucine Rich Repeat contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR003603 (U2A'/phosphoprotein 32 family A, C-terminal), IPR000875 (Cecropin)
39	F58G1.3	F58G1.3	n/a	chrII 12,927,067	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
40	T27F6.1	T27F6.1	n/a	chrI 12,472,050	contains similarity to Pfam domain PF02485 Core-2/I-Branching enzyme contains similarity to Interpro domain IPR003406 (Glycosyl transferase, family 14)
41	K03H1.12	K03H1.12	n/a	chrIII 9,941,867	contains similarity to Gallus gallus BDNF/NT-3 growth factors receptor precursor (EC 2.7.1.112) (TrkBstyrosine kinase) (Trk-B).; SW:TRKB_CHICK
42	C38C10.3	C38C10.3	n/a	chrIII 9,384,785	contains similarity to Pfam domain PF04370 Domain of unknown function (DUF508) contains similarity to Interpro domain IPR007465 (Protein of unknown function DUF508)
43	F38H4.6	F38H4.6	n/a	chrIV 11,847,560	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
44	C32E12.1	C32E12.1	n/a	chrI 5,234,144	contains similarity to Interpro domain IPR005819 (Histone H5)
45	fbxa-178	F17A9.1	n/a	chrV 6,116,834	F17A9.1 encodes a divergent ONECUT class CUT homeobox protein with a single N-terminal cut domain; F17A9.1 has an atypical tyrosine residue at position 48 of its homeodomain rather than a phenylalanine or tryptophan residue; the cut domain may be a compact DNA-binding domain composed of alpha helices; phylogenetically, F17A9.1 is (somewhat distantly) affiliated with C17H12.9, Drosophila ONECUT, and mammalian HNF6 proteins; F17A9.1 has no obvious function in mass RNAi assays.
46	spe-11	F48C1.7	n/a	chrI 5,331,412	spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
47	F33D11.2	F33D11.2	n/a	chrI 5,848,329	contains similarity to Gallus gallus Neurofilament medium polypeptide (NF-M) (Neurofilament triplet Msprotein) (160 kDa neurofilament protein).; SW:P16053
48	ZK354.3	ZK354.3	n/a	chrIV 5,310,807	contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR005448 (Voltage-dependent calcium channel, P/Q-type, alpha-1 subunit), IPR005398 (Tubby, N-terminal)
49	F57B9.8	F57B9.8	n/a	chrIII 6,934,439	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
50	F53C3.1	F53C3.1	n/a	chrII 3,912,702	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)