UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F42G4.6	F42G4.6	3e-140	chrII 13,079,994	F42G4.6 encodes a nematode-specific sperm protein; F42G4.6 has no obvious non-nematode homologs, but does have a putative central coiled-coil domain, and is is paralogous to four other C. elegans proteins (B0207.11, F42G4.6, F44F4.10, T08G11.2, and Y81G3A.1); F42G4.6(RNAi) animals exhibit aldicarb resistance; F42G4.6 expression is enriched in spermatogenesis.
2	T05C12.3	T05C12.3	n/a	chrII 8,172,837	contains similarity to Pfam domain PF00106 short chain dehydrogenase contains similarity to Interpro domains IPR002424 (Insect alcohol dehydrogenase family), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR000565 (DNA topoisomerase, type IIA, subunit B), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding)
3	ZK1248.5	ZK1248.5	n/a	chrII 5,811,119	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR001940 (Peptidase S1C, HrtA/DegP2/Q/S), IPR009658 (Protein of unknown function DUF1248)
4	M7.7	M7.7	n/a	chrIV 11,090,870	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
5	ZK354.3	ZK354.3	n/a	chrIV 5,310,807	contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR005448 (Voltage-dependent calcium channel, P/Q-type, alpha-1 subunit), IPR005398 (Tubby, N-terminal)
6	C34F11.2	C34F11.2	n/a	chrII 5,212,509
7	F47D12.7	F47D12.7	n/a	chrIII 6,294,525	contains similarity to Pfam domains PF01344 (Kelch motif) (5), PF00651 (BTB/POZ domain) , PF07646 (Kelch motif) contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR000210 (BTB/POZ-like), IPR006652 (Kelch repeat type 1), IPR011333 (BTB/POZ fold), IPR011498 (Kelch repeat type 2), IPR015916 (Galactose oxidase, beta-propeller), IPR013069 (BTB/POZ), IPR013089 (Kelch related), IPR006651 (Kelch), IPR015915 (Kelch-type beta propeller)
8	T21E12.5	T21E12.5	n/a	chrI 4,412,759
9	T28F4.3	T28F4.3	n/a	chrI 7,485,104	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR016130 (Protein-tyrosine phosphatase, active site), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase), IPR000340 (Protein-tyrosine phosphatase, dual specificity)
10	C41G7.6	C41G7.6	n/a	chrI 9,526,981	contains similarity to Paramecium tetraurelia Chromosome undetermined scaffold_96, whole genome shotgun sequence.; TR:A0EH68
11	F26B1.1	F26B1.1	n/a	chrI 6,328,529	contains similarity to Homo sapiens hypothetical protein; ENSEMBL:ENSP00000352916
12	F02E9.3	F02E9.3	n/a	chrI 8,405,244	contains similarity to Saccharomyces cerevisiae Protein required for the decapping of mRNAs, functions to allow the production of active Dcp1p, contains a pyrophosphatase MutT motif and several alpha-helical leucine-rich motifs; SGD:YNL118C
13	C28D4.5	C28D4.5	n/a	chrIV 9,746,156	contains similarity to Pfam domain PF06852 Protein of unknown function (DUF1248) contains similarity to Interpro domains IPR016181 (Acyl-CoA N-acyltransferase), IPR009658 (Protein of unknown function DUF1248)
14	C14A6.6	C14A6.6	n/a	chrV 18,166,242	contains similarity to Saccharomyces cerevisiae involved intracellular protein transport, coiled-coil protein necessary for protein transport from ER to Golgi; SGD:YDL058W
15	C08F8.6	C08F8.6	n/a	chrIV 11,163,509	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
16	F57B9.8	F57B9.8	n/a	chrIII 6,934,439	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
17	C34D4.2	C34D4.2	n/a	chrIV 7,155,353	contains similarity to Pfam domain PF00149 Calcineurin-like phosphoesterase contains similarity to Interpro domains IPR004843 (Metallophosphoesterase), IPR006186 (Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase)
18	T02E1.7	T02E1.7	n/a	chrI 8,209,741	contains similarity to Pfam domain PF02077 SURF4 family contains similarity to Interpro domains IPR002995 (Surfeit locus 4), IPR011592 (Surfeit locus 4-related)
19	Y6E2A.8	Y6E2A.8	n/a	chrV 15,725,749	contains similarity to Encephalitozoon cuniculi UPF0329 protein ECU05_1680/ECU11_0050.; SW:Q8STA9
20	spe-11	F48C1.7	n/a	chrI 5,331,412	spe-11 encodes a novel protein that is required for early embryonic development and for regulating the dynamic morphology of sperm pseudopods; although the precise biological role of SPE-11 is not yet known, SPE-11 is one of the few paternally provided proteins known to be essential for embryogenesis, and may constitute a sperm-associated factor required for oocyte activation; SPE-11 is first detected in the nuclei of primary spermatocytes and then remains tightly associated with sperm chromatin until fertilization at which point it appears to be degraded.
21	R04B5.11	R04B5.11	n/a	chrV 10,090,998	contains similarity to Homo sapiens Hypothetical protein; ENSEMBL:ENSP00000248104
22	T04F3.3	T04F3.3	n/a	chrV 11,759,725	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
23	C10H11.7	C10H11.7	n/a	chrI 4,720,444	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
24	Y106G6D.3	Y106G6D.3	n/a	chrI 10,113,137	contains similarity to Ensis minor Nuclear protein.; TR:Q24898
25	K06H7.8	K06H7.8	n/a	chrIII 8,097,370	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)
26	ZK1307.3	ZK1307.3	n/a	chrII 9,652,584	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
27	C34F11.5	C34F11.5	n/a	chrII 5,197,549	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR017441 (Protein kinase ATP binding, conserved site), IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
28	Y57G11C.6	Y57G11C.6	n/a	chrIV 14,759,618	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type), IPR000387 (Protein-tyrosine phosphatase)
29	T25B9.4	T25B9.4	n/a	chrIV 10,756,710	contains similarity to Pfam domains PF07714 (Protein tyrosine kinase) , PF00069 (Protein kinase domain) , PF00017 (SH2 domain) contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related), IPR000980 (SH2 motif), IPR008266 (Tyrosine protein kinase, active site)
30	F13G11.2	F13G11.2	n/a	chrIV 14,633,712	contains similarity to Rattus norvegicus Chondroadherin precursor (Cartilage leucine-rich protein).; SW:CHAD_RAT
31	W03D8.9	W03D8.9	n/a	chrI 2,785,349	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
32	F42C5.5	F42C5.5	n/a	chrIV 7,293,350	contains similarity to Pfam domain PF00102 Protein-tyrosine phosphatase contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR000242 (Protein-tyrosine phosphatase, receptor/non-receptor type)
33	kin-5	T13H10.1	n/a	chrIV 9,968,114	kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis); as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known.
34	F36A4.4	F36A4.4	n/a	chrIV 4,267,908	contains similarity to Pfam domain PF05912 Caenorhabditis elegans protein of unknown function (DUF870) contains similarity to Interpro domain IPR008588 (Protein of unknown function DUF870, Caenorhabditis species)
35	AH6.3	AH6.3	n/a	chrII 9,519,577	contains similarity to Interpro domains IPR005819 (Histone H5), IPR001946 (Adrenergic receptor, alpha-2A)
36	C50D2.3	C50D2.3	n/a	chrII 106,848	contains similarity to Pfam domain PF00595 PDZ domain (Also known as DHR or GLGF) contains similarity to Interpro domain IPR001478 (PDZ/DHR/GLGF)
37	Y106G6H.13	Y106G6H.13	n/a	chrI 10,471,577	contains similarity to Bacillus cereus Hypothetical membrane spanning protein.; TR:Q813N7
38	M88.3	M88.3	n/a	chrIII 4,544,265	contains similarity to Interpro domain IPR001841 (Zinc finger, RING-type)
39	K07A1.5	K07A1.5	n/a	chrI 9,591,179	contains similarity to Pfam domain PF03057 Protein of unknown function contains similarity to Interpro domains IPR004296 (Protein of unknown function DUF236), IPR001859 (Ribosomal protein P2), IPR003060 (Pyocin S killer protein)
40	K07A12.5	K07A12.5	n/a	chrI 8,694,231	contains similarity to Plasmodium falciparum Glutamic acid-rich protein precursor.; SW:GARP_PLAFF
41	W02A2.8	W02A2.8	n/a	chrIV 13,356,775
42	C25A8.2	C25A8.2	n/a	chrIV 7,010,276	contains similarity to Interpro domains IPR005819 (Histone H5), IPR000079 (High mobility group protein HMG14 and HMG17)
43	Y43F8C.3	Y43F8C.3	n/a	chrV 19,618,472	contains similarity to Pfam domain PF00651 BTB/POZ domain contains similarity to Interpro domains IPR000210 (BTB/POZ-like), IPR011333 (BTB/POZ fold), IPR013069 (BTB/POZ)
44	F58A6.5	F58A6.5	n/a	chrII 5,147,698	contains similarity to Pfam domain PF05884 Caenorhabditis elegans protein of unknown function (DUF856) contains similarity to Interpro domain IPR008574 (Protein of unknown function DUF856, Caenorhabditis species)
45	C54G4.3	C54G4.3	n/a	chrI 8,005,688	contains similarity to Homo sapiens Myosin heavy chain, skeletal muscle, fetal; ENSEMBL:ENSP00000255381
46	W03D8.5	W03D8.5	n/a	chrI 2,817,203	contains similarity to Pfam domain PF00635 MSP (Major sperm protein) domain contains similarity to Interpro domains IPR008962 (PapD-like), IPR000535 (Major sperm protein)
47	Y45F10B.8	Y45F10B.8	n/a	chrIV 13,577,771	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000533 (Tropomyosin)
48	ttr-9	C33A12.15	n/a	chrIV 9,505,947	C. elegans TTR-9 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like)
49	M70.1	M70.1	n/a	chrIV 2,249,128	contains similarity to Pfam domain PF02206 Domain of unknown function contains similarity to Interpro domains IPR003004 (Bacterial general secretion pathway protein F), IPR003125 (Protein of unknown function WSN)
50	C56C10.6	C56C10.6	n/a	chrII 6,580,455	contains similarity to Pfam domain PF00069 Protein kinase domain contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR011009 (Protein kinase-like), IPR000719 (Protein kinase, core), IPR001245 (Tyrosine protein kinase), IPR017442 (Serine/threonine protein kinase-related)