UCSC C. elegans Gene Sorter

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

UCSC C. elegans Gene Sorter

genome assembly search

sort by display output

#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F41C3.7	F41C3.7	8e-114	chrII 4,730,652
2	F57F5.3	F57F5.3	n/a	chrV 12,005,558	contains similarity to Streptococcus pyogenes Putative histidine kinase.; TR:Q8P2Q1
3	F42A6.6	F42A6.6	n/a	chrIV 3,336,420	contains similarity to Pfam domain PF05603 Protein of unknown function (DUF775) contains similarity to Interpro domain IPR008493 (Protein of unknown function DUF775)
4	dhs-25	F09E10.3	n/a	chrX 1,487,910	dhs-25 encodes a short-chain dehydrogenase predicted to be mitochondrial.
5	F13G3.3	F13G3.3	n/a	chrI 7,298,454	contains similarity to Pfam domain PF01697 Domain of unknown function contains similarity to Interpro domains IPR008167 (Protein of unknown function DUF23, C-terminal), IPR008166 (Protein of unknown function DUF23)
6	K10D3.4	K10D3.4	n/a	chrI 7,137,354	contains similarity to Pfam domains PF01683 (EB module) , PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain) (5)contains similarity to Interpro domains IPR002223 (Proteinase inhibitor I2, Kunitz metazoa), IPR006150 (Cysteine-rich repeat), IPR006149 (Nematode-specific EB region)
7	srh-40	Y40D12A.3	n/a	chrIII 6,611,482	C. elegans SRH-40 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
8	math-21	C40D2.3	n/a	chrII 1,994,852	C. elegans MATH-21 protein; contains similarity to Pfam domain PF00917 MATH domain contains similarity to Interpro domains IPR008974 (TRAF-like), IPR002083 (MATH)
9	R05D3.9	R05D3.9	n/a	chrIII 8,365,541	contains similarity to Interpro domains IPR012336 (Thioredoxin-like fold), IPR012335 (Thioredoxin fold)
10	C29F7.6	C29F7.6	n/a	chrX 13,439,091	C29F7.6 encodes a putative histone H3 di/trimethyllysine-27 (H3K27me2/me3) demethylase; C29F7.6 contains a C-terminal JmjC domain, and is homologous to human JMJD3, UTX (OMIM:300128), and UTY (OMIM:400009); C29F7.6 is expected to antagonize transcriptional repression by polycomb repressor complexes, which mark stem cells (and presumably germline) by H3K27me3-mediated repression of somatic genes; however, C29F7.6 has no obvious function in mass RNAi assays.
11	F12F6.1	F12F6.1	n/a	chrIV 11,586,743	contains similarity to Saccharomyces cerevisiae Putative glycosidase of the cell wall, may have a role in cell wall architecture; SGD:YGR189C
12	F54A5.1	F54A5.1	n/a	chrI 990,926	contains similarity to Pfam domain PF00046 Homeobox domain contains similarity to Interpro domains IPR010982 (Lambda repressor-like, DNA-binding), IPR012287 (Homeodomain-related), IPR001356 (Homeobox), IPR009057 (Homeodomain-like)
13	F55A4.5	F55A4.5	n/a	chrX 1,031,456	contains similarity to Pfam domain PF00035 Double-stranded RNA binding motif contains similarity to Interpro domains IPR001159 (Double-stranded RNA binding), IPR014720 (Double-stranded RNA-binding-like)
14	R07B7.8	R07B7.8	n/a	chrV 12,082,679	contains similarity to Pfam domain PF00657 GDSL-like Lipase/Acylhydrolase contains similarity to Interpro domains IPR001087 (Lipase, GDSL), IPR013830 (Esterase, SGNH hydrolase-type)
15	C13C12.2	C13C12.2	n/a	chrV 12,524,627	contains similarity to Interpro domain IPR000345 (Cytochrome c heme-binding site)
16	tap-1	C44H4.5	n/a	chrX 14,590,650	C. elegans TAP-1 protein; contains similarity to Pfam domain PF00481 Protein phosphatase 2C contains similarity to Interpro domains IPR001932 (Protein phosphatase 2C-related), IPR014045 (Protein phosphatase 2C, N-terminal), IPR015655 (Protein phosphatase 2C)
17	B0250.5	B0250.5	n/a	chrV 20,491,021	contains similarity to Pfam domain PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase contains similarity to Interpro domains IPR006115 (6-phosphogluconate dehydrogenase, NAD-binding), IPR013328 (Dehydrogenase, multihelical), IPR015815 (3-hydroxyacid dehydrogenase/reductase), IPR011548 (3-hydroxyisobutyrate dehydrogenase), IPR006183 (6-phosphogluconate dehydrogenase), IPR016040 (NAD(P)-binding), IPR002204 (3-hydroxyisobutyrate dehydrogenase-related, conserved site)
18	cul-5	ZK856.1	n/a	chrV 10,181,305	cul-5 encodes a cullin, orthologous to vasopressin-activated calcium-mobilizing receptor-1 in mammals, that is thought to regulate the cell cycle by virtue of its paralogy to cul-1 and cul-2; however, CUL-5 is dispensable for viability and gross morphology in mass RNAi screens, and does not appear to interact with any of 17 Skp1-related proteins (SKR-1 through SKR-21).
19	B0334.6	B0334.6	n/a	chrII 11,512,193	contains similarity to Pfam domain PF00001 7 transmembrane receptor (rhodopsin family) contains similarity to Interpro domains IPR017452 (GPCR, rhodopsin-like superfamily), IPR000276 (GPCR, rhodopsin-like)
20	dcs-1	Y113G7A.9	n/a	chrV 20,084,683	dcs-1 encodes a scavenger mRNA decapping enzyme; dcs-1 exhibits hydrolase activity in vitro, with specificity for 7meGMP in its primary nucleoside monophosphate binding site; dcs-1 is the upstream gene in an operon with fre-1, which encodes an NADPH-dependent flavin reductase; reporter fusions using dcs-1 upstream sequence direct expression throughout the life cycle in neurons and pharyngeal muscle; expression is present in dauer larvae and enhanced by heat shock.
21	sra-29	F18C5.8	n/a	chrII 6,575,011	C. elegans SRA-29 protein; contains similarity to Pfam domain PF02117 C.elegans Sra family integral membrane protein contains similarity to Interpro domain IPR000344 (Nematode chemoreceptor, Sra)
22	T01D3.2	T01D3.2	n/a	chrV 13,706,650	contains similarity to Pfam domain PF00989 PAS fold contains similarity to Interpro domains IPR001092 (Basic helix-loop-helix dimerisation region bHLH), IPR013767 (PAS fold), IPR000014 (PAS), IPR011598 (Helix-loop-helix DNA-binding), IPR001067 (Nuclear translocator)
23	C45E5.1	C45E5.1	n/a	chrIV 5,745,740	contains similarity to Pfam domain PF00702 haloacid dehalogenase-like hydrolase contains similarity to Interpro domains IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR005834 (Haloacid dehalogenase-like hydrolase)
24	F23B2.3	F23B2.3	n/a	chrIV 9,134,019	contains similarity to Pfam domain PF00858 Amiloride-sensitive sodium channel contains similarity to Interpro domain IPR001873 (Na+ channel, amiloride-sensitive)
25	npp-7	T19B4.2	n/a	chrI 5,694,480	C. elegans NPP-7 protein; contains similarity to Interpro domain IPR001876 (Zinc finger, RanBP2-type)
26	crb-1	F11C7.4	n/a	chrX 17,408,117	crb-1 encodes a homolog of Drosophila CRUMBS that affects dauer formation and feeding behavior; CRB-1 can bind cyclic AMP-response element (CRE) sites and be phosphorylated by PKA in vitro, and is expressed immediately apical to the zonula adherens in embryos and then ubiquitously later during development and in adults; CRB-1 is homologous to human CRB1 (OMIM:604210, mutated in retinitis pigmentosa 12 or Leber congenital amaurosis).
27	F20B4.2	F20B4.2	n/a	chrX 17,704,274
28	K09C4.5	K09C4.5	n/a	chrX 3,284,155	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR005828 (General substrate transporter), IPR016196 (MFS general substrate transporter)
29	ZK1225.1	ZK1225.1	n/a	chrI 13,206,699	contains similarity to Pfam domain PF07801 Protein of unknown function (DUF1647) contains similarity to Interpro domain IPR012444 (Protein of unknown function DUF1647)
30	rib-2	K01G5.6	n/a	chrIII 10,744,609	The rib-2 gene encodes an ortholog of human EXT2, which when mutated leads to hereditary multiple exostoses, type II (OMIM:133701).
31	C26B2.8	C26B2.8	n/a	chrIV 8,014,864	contains similarity to Interpro domains IPR008914 (Phosphatidylethanolamine-binding protein PEBP), IPR006150 (Cysteine-rich repeat)
32	C16C8.2	C16C8.2	n/a	chrII 3,433,889	contains similarity to Pfam domains PF01549 (ShK domain-like) (2), PF03098 (Animal haem peroxidase) contains similarity to Interpro domains IPR010255 (Haem peroxidase), IPR002007 (Haem peroxidase, animal), IPR003582 (Metridin-like ShK toxin)
33	W04G3.7	W04G3.7	n/a	chrX 11,084,822	contains similarity to Interpro domain IPR001211 (Phospholipase A2)
34	ddl-2	Y48E1B.1	n/a	chrII 13,545,140	C. elegans DDL-2 protein; contains similarity to Interpro domains IPR006077 (Vinculin/alpha-catenin), IPR000381 (Inhibin, beta B subunit), IPR000694 (Proline-rich region), IPR003882 (Pistil-specific extensin-like protein)
35	C36B1.9	C36B1.9	n/a	chrI 8,745,380	contains similarity to Pfam domain PF00097 Zinc finger, C3HC4 type (RING finger) contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR003604 (Zinc finger, U1-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR000568 (ATPase, F0 complex, subunit A)
36	Y45G12C.6	Y45G12C.6	n/a	chrV 2,541,544	contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
37	F13E6.5	F13E6.5	n/a	chrX 10,696,500	contains similarity to Pfam domain PF01569 PAP2 superfamily contains similarity to Interpro domains IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR016118 (Phosphatidic acid phosphatase/chloroperoxidase, N-terminal)
38	C18H7.5	C18H7.5	n/a	chrIV 587,001
39	F22F7.2	F22F7.2	n/a	chrV 2,125,082	contains similarity to Pfam domain PF03435 Saccharopine dehydrogenase contains similarity to Interpro domains IPR005097 (Saccharopine dehydrogenase), IPR016040 (NAD(P)-binding)
40	K09B11.3	K09B11.3	n/a	chrIV 13,430,380	contains similarity to Homo sapiens DJ614O4.3; ENSEMBL:ENSP00000305301
41	glb-10	C29F5.7	n/a	chrII 6,308,800	glb-10 encodes a globin; glb-10 is expressed in pharynx, intestine, vulval muscle, and many neurons, with at least some subcellular localization to synapses; however, glb-10 has no obvious function in mass RNAi assays.
42	ZK669.2	ZK669.2	n/a	chrII 7,937,580	contains similarity to Pfam domain PF03227 Gamma interferon inducible lysosomal thiol reductase (GILT) contains similarity to Interpro domain IPR004911 (Gamma interferon inducible lysosomal thiol reductase GILT)
43	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
44	Y43F4B.7	Y43F4B.7	n/a	chrIII 13,310,326	contains similarity to Pfam domain PF01490 Transmembrane amino acid transporter protein contains similarity to Interpro domains IPR013057 (Amino acid transporter, transmembrane), IPR003568 (Cytochrome c-type biogenesis protein CcmF)
45	F41E6.12	F41E6.12	n/a	chrV 8,627,981
46	K07C11.4	K07C11.4	n/a	chrV 8,204,685	contains similarity to Pfam domain PF00135 Carboxylesterase contains similarity to Interpro domain IPR002018 (Carboxylesterase, type B)
47	F21G4.5	F21G4.5	n/a	chrX 9,906,914	contains similarity to Interpro domain IPR007087 (Zn-finger, C2H2 type)
48	Y52B11A.10	Y52B11A.10	n/a	chrI 11,045,757	contains similarity to Pfam domains PF02854 (MIF4G domain) , PF02847 (MA3 domain) contains similarity to Interpro domains IPR003890 (MIF4G-like, type 3), IPR016021 (MIF4-like, type 1/2/3), IPR003891 (Initiation factor eIF-4 gamma, MA3), IPR016024 (Armadillo-type fold)
49	F32G8.4	F32G8.4	n/a	chrV 10,559,356	contains similarity to Pfam domain PF01062 Bestrophin contains similarity to Interpro domain IPR000615 (Bestrophin)
50	F57G8.5	F57G8.5	n/a	chrV 16,340,228	contains similarity to Pfam domain PF00999 Sodium/hydrogen exchanger family contains similarity to Interpro domain IPR006153 (Sodium/hydrogen exchanger)