UCSC C. elegans Gene Sorter

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UCSC C. elegans Gene Sorter

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#	Name	WormBase	BLASTP E-Value	Genome Position	Description
1	F39G3.6	F39G3.6	0	chrV 4,712,695	contains similarity to Pfam domain PF01757 Acyltransferase family contains similarity to Interpro domain IPR002656 (Acyltransferase 3)
2	ZK822.2	ZK822.2	n/a	chrIV 11,922,736	contains similarity to Pfam domain PF02520 Domain of unknown function DUF148 contains similarity to Interpro domain IPR003677 (Protein of unknown function DUF148)
3	F35E8.9	F35E8.9	n/a	chrV 15,916,920	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
4	C07A9.10	C07A9.10	n/a	chrIII 9,685,849	contains similarity to Pfam domain: PF00442 (Ubiquitin carboxyl-terminal hydrolases family 2), Score=28.0, E-value=1e-05, N=1
5	srd-47	F17A2.11	n/a	chrX 12,334,389	C. elegans SRD-47 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
6	ZK1307.9	ZK1307.9	n/a	chrII 9,650,113	contains similarity to Pfam domain PF04502 Family of unknown function (DUF572) contains similarity to Interpro domain IPR007590 (Protein of unknown function DUF572)
7	C17B7.10	C17B7.10	n/a	chrV 3,341,460	C17B7.10 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; C17B7.10 has no clear orthologs in other organisms.
8	asna-2	F47G3.2	n/a	chrX 2,383,478	C. elegans ASNA-2 protein; contains similarity to Pfam domain PF02374 Anion-transporting ATPase contains similarity to Interpro domain IPR003348 (Anion-transporting ATPase)
9	F32D8.8	F32D8.8	n/a	chrV 10,902,107	contains similarity to Pfam domain PF03269 Caenorhabditis protein of unknown function, DUF268 contains similarity to Interpro domain IPR004951 (Protein of unknown function DUF268, Caenorhabditis species)
10	ZK643.6	ZK643.6	n/a	chrIII 8,958,109	contains similarity to Pfam domain PF01549 ShK domain-like contains similarity to Interpro domain IPR003582 (Metridin-like ShK toxin)
11	srg-26	C10G8.1	n/a	chrV 5,332,145	C. elegans SRG-26 protein; contains similarity to Pfam domain PF02118 C.elegans Srg family integral membrane protein contains similarity to Interpro domain IPR000609 (Serpentine gamma receptor, Caenorhabditis species)
12	gmd-2	F56H6.5	n/a	chrI 12,293,092	gmd-2 encodes one of two C. elegans GDP-mannose dehydratases; in vitro, and when coexpressed with GER-1, GMD-2 catalyzes the formation of GDP-fucose from GDP-mannose; gmd-2 transcripts are generally present throughout larval and adult stages.
13	T01G6.10	T01G6.10	n/a	chrV 502,683	contains similarity to Pfam domains PF01370 (NAD dependent epimerase/dehydratase family) , PF00106 (short chain dehydrogenase) contains similarity to Interpro domains IPR002424 (Insect alcohol dehydrogenase family), IPR001509 (NAD-dependent epimerase/dehydratase), IPR003560 (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase), IPR002347 (Glucose/ribitol dehydrogenase), IPR002198 (Short-chain dehydrogenase/reductase SDR), IPR016040 (NAD(P)-binding), IPR001100 (Pyridine nucleotide-disulphide oxidoreductase, class I)
14	C04E6.3	C04E6.3	n/a	chrV 5,920,241
15	T26E4.5	T26E4.5	n/a	chrV 15,787,827	contains similarity to Interpro domain IPR008996 ()
16	C47A10.5	C47A10.5	n/a	chrV 17,775,721	C47A10.5 encodes a D-aspartate oxidase (DASPO), paralogous to F18E3.7 and F20H11.5; recombinant C47A10.5 protein has DASPO acvitity on acidic D-amino acid substrates (e.g., D-aspartate, D-glutamate, or N-methyl-D-aspartate/NMDA), with highest catalytic efficiency on D-glutamate; since the C-terminal residues of C47A10.5 match the PTS1 consensus sequence, C47A10.5 is predicted to be peroxisomal.
17	B0507.5	B0507.5	n/a	chrV 8,754,261
18	nhr-255	ZK678.2	n/a	chrX 15,743,376	C. elegans NHR-255 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000679 (Zinc finger, GATA-type), IPR000324 (Vitamin D receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
19	ZC190.10	ZC190.10	n/a	chrV 8,696,074
20	C30G12.3	C30G12.3	n/a	chrII 7,275,917
21	nhr-278	ZK6.1	n/a	chrV 409,173	C. elegans NHR-278 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor) , PF00105 (Zinc finger, C4 type (two domains)) contains similarity to Interpro domains IPR008946 (Nuclear hormone receptor, ligand-binding), IPR000679 (Zinc finger, GATA-type), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding, core)
22	str-44	C42D4.4	n/a	chrIV 7,177,788	C. elegans STR-44 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
23	T15D6.8	T15D6.8	n/a	chrI 12,390,358	contains similarity to Pfam domain PF01482 Domain of unknown function DUF13 contains similarity to Interpro domain IPR002485 (Protein of unknown function DUF13)
24	D1022.5	D1022.5	n/a	chrII 7,458,058
25	F57B9.1	F57B9.1	n/a	chrIII 6,962,648	contains similarity to Pfam domain PF01243 Pyridoxamine 5'-phosphate oxidase contains similarity to Interpro domains IPR012349 (FMN-binding split barrel), IPR011576 (Pyridoxamine 5'-phosphate oxidase-related, FMN-binding core), IPR009002 (FMN-binding split barrel, related), IPR000659 (Pyridoxamine 5'-phosphate oxidase)
26	W03G1.4	W03G1.4	n/a	chrIV 509,467	contains similarity to Pfam domain PF06869 Protein of unknown function (DUF1258) contains similarity to Interpro domain IPR009667 (Protein of unknown function DUF1258)
27	fbxa-53	F07G6.7	n/a	chrX 1,717,501	C. elegans FBXA-53 protein; contains similarity to Pfam domains PF01827 (FTH domain) , PF00646 (F-box domain) contains similarity to Interpro domains IPR002900 (Protein of unknown function DUF38, Caenorhabditis species), IPR001810 (Cyclin-like F-box)
28	T13F3.4	T13F3.4	n/a	chrV 16,265,325	contains similarity to Pfam domain PF01579 Domain of unknown function DUF19 contains similarity to Interpro domain IPR002542 (Protein of unknown function DUF19)
29	W08F4.5	W08F4.5	n/a	chrII 567,279
30	gur-5	ZK622.2	n/a	chrII 5,287,091	C. elegans GUR-5 protein ;
31	F59B10.2	F59B10.2	n/a	chrII 10,508,511	contains similarity to Interpro domains IPR003993 (Treacher Collins syndrome, treacle), IPR005819 (Histone H5)
32	spp-11	T25D10.3	n/a	chrII 6,406,317	C. elegans SPP-11 protein; contains similarity to Interpro domains IPR000694 (Proline-rich region), IPR011001 (Saposin-like), IPR008139 (Saposin B)
33	str-9	F57A10.1	n/a	chrV 15,759,569	C. elegans STR-9 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
34	K08F9.1	K08F9.1	n/a	chrV 15,138,399	contains similarity to Pfam domains PF07690 (Major Facilitator Superfamily) , PF00083 (Sugar (and other) transporter) contains similarity to Interpro domains IPR007114 (Major facilitator superfamily), IPR011701 (Major facilitator superfamily MFS-1), IPR005828 (General substrate transporter), IPR003663 (Sugar transporter), IPR016196 (MFS general substrate transporter)
35	ZC13.2	ZC13.2	n/a	chrX 881,854
36	R03D7.2	R03D7.2	n/a	chrII 10,933,886	contains similarity to Rhodopirellula baltica DNA-binding protein SMUBP-2.; TR:Q7UWP1
37	str-183	T13F3.1	n/a	chrV 16,276,778	C. elegans STR-183 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)
38	C16D6.3	C16D6.3	n/a	chrX 12,526,895	contains similarity to Prochlorococcus marinus Predicted protein.; TR:Q7VCK1
39	C43H6.6	C43H6.6	n/a	chrX 2,397,074	contains similarity to Pfam domains PF00059 (Lectin C-type domain) , PF00431 (CUB domain) contains similarity to Interpro domains IPR000859 (CUB), IPR016187 (C-type lectin fold), IPR016186 (C-type lectin-like), IPR001304 (C-type lectin)
40	fbxa-163	C08E3.6	n/a	chrII 1,610,019	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
41	R04E5.9	R04E5.9	n/a	chrX 8,808,513	contains similarity to Homo sapiens Triadin; ENSEMBL:ENSP00000333984
42	fbxb-6	F07E5.1	n/a	chrII 2,066,717	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
43	srsx-1	F40D4.5	n/a	chrV 17,177,360	C. elegans SRSX-1 protein; contains similarity to Interpro domain IPR017452 (GPCR, rhodopsin-like superfamily)
44	C08B6.5	C08B6.5	n/a	chrV 10,118,697	contains similarity to Danio rerio Glutamate receptor delta-2 subunit precursor (GluR delta-2).; SW:Q68Y21
45	ZK1073.1	ZK1073.1	n/a	chrX 16,126,525	contains similarity to Pfam domain PF03096 Ndr family contains similarity to Interpro domain IPR004142 (Ndr)
46	taf-3	C11G6.1	n/a	chrX 16,334,113	taf-3 encodes the C. elegans ortholog of mammalian TAF3(TAFII140), a component of the RNA polymerase II TFIID transcription complex; TAF-3 contains a histone fold-like domain in its N-terminus and by homology, is predicted to function in transcriptional regulation; however, as loss of taf-3 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of taf-3 in C. elegans development and/or behavior is not yet known.
47	F53B7.2	F53B7.2	n/a	chrV 10,993,353	F53B7.2 encodes a homolog of the functionally active Fmrf Receptor (FR; CG2114) of D. melanogaster; it is thus possible that F53B7.2 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12).
48	T27E7.6	T27E7.6	n/a	chrIV 14,541,148	contains similarity to Interpro domains IPR000533 (Tropomyosin), IPR002291 (Phosphorylase kinase, gamma catalytic subunit)
49	ilys-1	C45G7.1	n/a	chrIV 2,470,894	C. elegans ILYS-1 protein; contains similarity to Pfam domain PF05497 Destabilase contains similarity to Interpro domain IPR008597 (Destabilase)
50	srd-69	H04J21.2	n/a	chrIII 2,364,601	C. elegans SRD-69 protein; contains similarity to Pfam domain PF01461 7TM chemoreceptor contains similarity to Interpro domain IPR003002 (7TM chemoreceptor, subfamily 1)